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comparison snpEff.xml @ 9:f981ba577f2b

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Prevent duplication of regulation and extra_annotation options
author Jim Johnson <jj@umn.edu>
date Fri, 29 Nov 2013 17:13:33 -0600
parents 0ad9733e22a4
children 39cb913568ec
comparison
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8:aecbd8878923 9:f981ba577f2b
100 </param> 100 </param>
101 <param name="extra_annotations" type="select" display="checkboxes" multiple="true" label="Additional Annotations"> 101 <param name="extra_annotations" type="select" display="checkboxes" multiple="true" label="Additional Annotations">
102 <help>These are available for only a few genomes</help> 102 <help>These are available for only a few genomes</help>
103 <options from_data_table="snpeff_annotations"> 103 <options from_data_table="snpeff_annotations">
104 <filter type="param_value" ref="genomeVersion" key="genome" column="0" /> 104 <filter type="param_value" ref="genomeVersion" key="genome" column="0" />
105 <filter type="unique_value" column="1" />
105 </options> 106 </options>
106 </param> 107 </param>
107 <param name="regulation" type="select" display="checkboxes" multiple="true" label="Non-coding and regulatory Annotation"> 108 <param name="regulation" type="select" display="checkboxes" multiple="true" label="Non-coding and regulatory Annotation">
108 <help>These are available for only a few genomes</help> 109 <help>These are available for only a few genomes</help>
109 <options from_data_table="snpeff_regulationdb"> 110 <options from_data_table="snpeff_regulationdb">
110 <filter type="param_value" ref="genomeVersion" key="genome" column="0" /> 111 <filter type="param_value" ref="genomeVersion" key="genome" column="0" />
112 <filter type="unique_value" column="1" />
111 </options> 113 </options>
112 </param> 114 </param>
113 </when> 115 </when>
114 <when value="history"> 116 <when value="history">
115 <param format="snpeffdb" name="snpeff_db" type="data" label="SnpEff Genome Version Data"/> 117 <param format="snpeffdb" name="snpeff_db" type="data" label="SnpEff Genome Version Data"/>