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comparison snpEff_macros.xml @ 23:924af057bbca draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 93465571cf180554c3548338a68fa0f1604985dc-dirty
author jjohnson
date Sat, 09 Apr 2016 11:51:40 -0400
parents bb0797deab78
children
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22:bb0797deab78 23:924af057bbca
9 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" /> 9 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" />
10 <exit_code range="1:" level="fatal" description="Error" /> 10 <exit_code range="1:" level="fatal" description="Error" />
11 </stdio> 11 </stdio>
12 </xml> 12 </xml>
13 <xml name="version_command"> 13 <xml name="version_command">
14 <version_command>java -jar $SNPEFF_JAR_PATH/SnpEff.jar -version</version_command> 14 <version_command>java -jar "$SNPEFF_JAR_PATH/snpEff.jar" -version</version_command>
15 </xml> 15 </xml>
16 <token name="@WRAPPER_VERSION@">4.1</token> 16 <token name="@WRAPPER_VERSION@">4.1</token>
17 <token name="@SNPEFF_VERSION@">SnpEff4.1</token> 17 <token name="@SNPEFF_VERSION@">SnpEff4.1</token>
18 <token name="@SNPEFF_DATABASE_URL@">https://snpeff-data.galaxyproject.org/databases/v4_1/</token> 18 <token name="@SNPEFF_DATABASE_URL@">https://snpeff-data.galaxyproject.org/databases/v4_1/</token>
19 <token name="@EXTERNAL_DOCUMENTATION@"> 19 <token name="@EXTERNAL_DOCUMENTATION@">