Mercurial > repos > jjohnson > snpeff
comparison data_manager/data_manager_snpEff_databases.xml @ 4:47ddc9f4d0b6
Add tests to datamanagers
author | Jim Johnson <jj@umn.edu> |
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date | Mon, 07 Oct 2013 10:59:44 -0500 |
parents | 6ad9205c1307 |
children | 8952990fcab9 |
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3:a8f4ebfb8253 | 4:47ddc9f4d0b6 |
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13 </outputs> | 13 </outputs> |
14 <stdio> | 14 <stdio> |
15 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" /> | 15 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" /> |
16 <exit_code range="1:" level="fatal" description="Error" /> | 16 <exit_code range="1:" level="fatal" description="Error" /> |
17 </stdio> | 17 </stdio> |
18 | 18 <tests> |
19 <test> | |
20 <output name="out_file"> | |
21 <assert_contents> | |
22 <!-- Check that a genome was added --> | |
23 <has_text text="GRCh37.72" /> | |
24 </assert_contents> | |
25 </output> | |
26 </test> | |
27 </tests> | |
19 <help> | 28 <help> |
20 | 29 |
21 This tool updatess the list of SnpEff databases for the SnpEff Download data manager. | 30 This tool updatess the list of SnpEff databases for the SnpEff Download data manager. |
22 It should only need to be run once for a snpEff version, | 31 It should only need to be run once for a snpEff version, |
23 since it populates the SnpEff Download data manager from the snpEff config file. | 32 since it populates the SnpEff Download data manager from the snpEff config file. |