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comparison data_manager/data_manager_snpEff_databases.xml @ 4:47ddc9f4d0b6

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Add tests to datamanagers
author Jim Johnson <jj@umn.edu>
date Mon, 07 Oct 2013 10:59:44 -0500
parents 6ad9205c1307
children 8952990fcab9
comparison
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3:a8f4ebfb8253 4:47ddc9f4d0b6
13 </outputs> 13 </outputs>
14 <stdio> 14 <stdio>
15 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" /> 15 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" />
16 <exit_code range="1:" level="fatal" description="Error" /> 16 <exit_code range="1:" level="fatal" description="Error" />
17 </stdio> 17 </stdio>
18 18 <tests>
19 <test>
20 <output name="out_file">
21 <assert_contents>
22 <!-- Check that a genome was added -->
23 <has_text text="GRCh37.72" />
24 </assert_contents>
25 </output>
26 </test>
27 </tests>
19 <help> 28 <help>
20 29
21 This tool updatess the list of SnpEff databases for the SnpEff Download data manager. 30 This tool updatess the list of SnpEff databases for the SnpEff Download data manager.
22 It should only need to be run once for a snpEff version, 31 It should only need to be run once for a snpEff version,
23 since it populates the SnpEff Download data manager from the snpEff config file. 32 since it populates the SnpEff Download data manager from the snpEff config file.