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comparison snpEff.xml @ 19:2e37b58fc24d

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Fix some versions
author Jim Johnson <jj@umn.edu>
date Tue, 13 Jan 2015 15:01:37 -0600
parents 36f3c82323e6
children c780e3f75b3d
comparison
equal deleted inserted replaced
18:36f3c82323e6 19:2e37b58fc24d
116 </param> 116 </param>
117 <when value="cached"> 117 <when value="cached">
118 <param name="genomeVersion" type="select" label="Genome"> 118 <param name="genomeVersion" type="select" label="Genome">
119 <!--GENOME DESCRIPTION--> 119 <!--GENOME DESCRIPTION-->
120 <options from_data_table="snpeffv_genomedb"> 120 <options from_data_table="snpeffv_genomedb">
121 <filter type="static_value" name="snpeff_version" value="SnpEff4.1" column="1"/> 121 <filter type="static_value" name="snpeff_version" value="SnpEff4.0" column="1"/>
122 <filter type="unique_value" column="2" /> 122 <filter type="unique_value" column="2" />
123 </options> 123 </options>
124 </param> 124 </param>
125 <param name="extra_annotations" type="select" display="checkboxes" multiple="true" label="Additional annotations"> 125 <param name="extra_annotations" type="select" display="checkboxes" multiple="true" label="Additional annotations">
126 <help>These are available for only a few genomes</help> 126 <help>These are available for only a few genomes</help>
127 <options from_data_table="snpeffv_annotations"> 127 <options from_data_table="snpeffv_annotations">
128 <filter type="param_value" ref="genomeVersion" key="genome" column="2" /> 128 <filter type="param_value" ref="genomeVersion" key="genome" column="2" />
129 <filter type="unique_value" column="1" /> 129 <filter type="unique_value" column="3" />
130 </options> 130 </options>
131 </param> 131 </param>
132 <param name="regulation" type="select" display="checkboxes" multiple="true" label="Non-coding and regulatory annotation"> 132 <param name="regulation" type="select" display="checkboxes" multiple="true" label="Non-coding and regulatory annotation">
133 <help>These are available for only a few genomes</help> 133 <help>These are available for only a few genomes</help>
134 <options from_data_table="snpeffv_regulationdb"> 134 <options from_data_table="snpeffv_regulationdb">
135 <filter type="param_value" ref="genomeVersion" key="genome" column="2" /> 135 <filter type="param_value" ref="genomeVersion" key="genome" column="2" />
136 <filter type="unique_value" column="1" /> 136 <filter type="unique_value" column="3" />
137 </options> 137 </options>
138 </param> 138 </param>
139 </when> 139 </when>
140 <when value="history"> 140 <when value="history">
141 <param format="snpeffdbv41" name="snpeff_db" type="data" label="SnpEff Genome Version Data"/> 141 <param format="snpeffdbv40" name="snpeff_db" type="data" label="SnpEff Genome Version Data"/>
142 <!-- From metadata --> 142 <!-- From metadata -->
143 <param name="extra_annotations" type="select" display="checkboxes" multiple="true" label="Additional annotations"> 143 <param name="extra_annotations" type="select" display="checkboxes" multiple="true" label="Additional annotations">
144 <help>These are available for only a few genomes</help> 144 <help>These are available for only a few genomes</help>
145 <options> 145 <options>
146 <filter type="data_meta" ref="snpeff_db" key="annotation" /> 146 <filter type="data_meta" ref="snpeff_db" key="annotation" />