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annotate snpEff_macros.xml @ 13:4be8e0068bc3

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Update loc data to separate version 4 databases
author Jim Johnson <jj@umn.edu>
date Tue, 21 Oct 2014 14:05:27 -0500
parents 6d429d880a75
children 36f3c82323e6
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1 <macros>
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2 <xml name="requirements">
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3 <requirements>
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6d429d880a75 Update for snpeff version 4.0
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4 <requirement type="package" version="4.0">snpEff</requirement>
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5 </requirements>
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6 </xml>
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7 <xml name="stdio">
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8 <stdio>
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9 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" />
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10 <exit_code range="1:" level="fatal" description="Error" />
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11 </stdio>
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12 </xml>
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13 <token name="@EXTERNAL_DOCUMENTATION@">
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c5288d5a446e Update to version 3.6 and refactor to new repositories: snpsift, snpeff_datatypes, data_manager_snpeff
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15 For details about this tool, please go to:
c5288d5a446e Update to version 3.6 and refactor to new repositories: snpsift, snpeff_datatypes, data_manager_snpeff
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16 http://snpeff.sourceforge.net/SnpEff_manual.html
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18 </token>
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19 <token name="@CITATION_SECTION@">------
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21 **Citation**
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23 For the underlying tool, please cite the following two publications:
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25 SnpEff citation:
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26 "A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.", Cingolani P, Platts A, Wang le L, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM. Fly (Austin). 2012 Apr-Jun;6(2):80-92. PMID: 22728672 [PubMed - in process]
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28 SnpSift citation:
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29 "Using Drosophila melanogaster as a model for genotoxic chemical mutational studies with a new program, SnpSift", Cingolani, P., et. al., Frontiers in Genetics, 3, 2012.
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31 </token>
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32 </macros>