Mercurial > repos > jjohnson > snpeff
annotate snpEff_macros.xml @ 19:2e37b58fc24d
Fix some versions
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Tue, 13 Jan 2015 15:01:37 -0600 |
| parents | 36f3c82323e6 |
| children | 7a46f9a72d3c |
| rev | line source |
|---|---|
| 7 | 1 <macros> |
| 2 <xml name="requirements"> | |
| 3 <requirements> | |
| 12 | 4 <requirement type="package" version="4.0">snpEff</requirement> |
| 7 | 5 </requirements> |
| 6 </xml> | |
| 7 <xml name="stdio"> | |
| 8 <stdio> | |
| 9 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" /> | |
| 10 <exit_code range="1:" level="fatal" description="Error" /> | |
| 11 </stdio> | |
| 12 </xml> | |
|
18
36f3c82323e6
Use tool_data_table with key and version columns added to allow for multiple versions in a .loc file
Jim Johnson <jj@umn.edu>
parents:
12
diff
changeset
|
13 <token name="@WRAPPER_VERSION@">4.0</token> |
|
36f3c82323e6
Use tool_data_table with key and version columns added to allow for multiple versions in a .loc file
Jim Johnson <jj@umn.edu>
parents:
12
diff
changeset
|
14 <token name="@SNPEFF_DATABASE_URL@">http://sourceforge.net/projects/snpeff/files/databases/v4_1/</token> |
| 7 | 15 <token name="@EXTERNAL_DOCUMENTATION@"> |
| 16 | |
|
11
c5288d5a446e
Update to version 3.6 and refactor to new repositories: snpsift, snpeff_datatypes, data_manager_snpeff
Jim Johnson <jj@umn.edu>
parents:
8
diff
changeset
|
17 For details about this tool, please go to: |
|
c5288d5a446e
Update to version 3.6 and refactor to new repositories: snpsift, snpeff_datatypes, data_manager_snpeff
Jim Johnson <jj@umn.edu>
parents:
8
diff
changeset
|
18 http://snpeff.sourceforge.net/SnpEff_manual.html |
| 7 | 19 |
| 20 </token> | |
| 21 <token name="@CITATION_SECTION@">------ | |
| 22 | |
| 23 **Citation** | |
| 24 | |
| 25 For the underlying tool, please cite the following two publications: | |
| 26 | |
| 27 SnpEff citation: | |
|
18
36f3c82323e6
Use tool_data_table with key and version columns added to allow for multiple versions in a .loc file
Jim Johnson <jj@umn.edu>
parents:
12
diff
changeset
|
28 "A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.", Cingolani P, Platts A, Wang le L, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM. Fly 6(2):80-92, 2012 |
| 7 | 29 |
| 30 </token> | |
|
18
36f3c82323e6
Use tool_data_table with key and version columns added to allow for multiple versions in a .loc file
Jim Johnson <jj@umn.edu>
parents:
12
diff
changeset
|
31 <xml name="citations"> |
|
36f3c82323e6
Use tool_data_table with key and version columns added to allow for multiple versions in a .loc file
Jim Johnson <jj@umn.edu>
parents:
12
diff
changeset
|
32 <citations> |
|
36f3c82323e6
Use tool_data_table with key and version columns added to allow for multiple versions in a .loc file
Jim Johnson <jj@umn.edu>
parents:
12
diff
changeset
|
33 <citation type="doi">10.4161/fly.19695</citation> |
|
36f3c82323e6
Use tool_data_table with key and version columns added to allow for multiple versions in a .loc file
Jim Johnson <jj@umn.edu>
parents:
12
diff
changeset
|
34 <yield /> |
|
36f3c82323e6
Use tool_data_table with key and version columns added to allow for multiple versions in a .loc file
Jim Johnson <jj@umn.edu>
parents:
12
diff
changeset
|
35 </citations> |
|
36f3c82323e6
Use tool_data_table with key and version columns added to allow for multiple versions in a .loc file
Jim Johnson <jj@umn.edu>
parents:
12
diff
changeset
|
36 </xml> |
| 7 | 37 </macros> |