Mercurial > repos > jjohnson > shear

diff tool_dependencies.xml @ 4:a82400332451

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Use shear_wrapper.py to generate reference indexes when needed
author Jim Johnson <jj@umn.edu>
date Tue, 16 Jul 2013 12:38:48 -0500
parents ea76da1e7281
children aaaa5a071ff0
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--- a/tool_dependencies.xml	Mon Jul 08 01:10:38 2013 -0500
+++ b/tool_dependencies.xml	Tue Jul 16 12:38:48 2013 -0500
@@ -1,6 +1,5 @@
 <?xml version="1.0"?>
 <tool_dependency>
-http://testtoolshed.g2.bx.psu.edu/
     <package name="samtools" version="0.1.18">
         <repository changeset_revision="5f7ec5048224" name="package_samtools_0_1_18" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
@@ -12,6 +11,11 @@
     </package>
     <package name="crest" version="1.0.1">
         <repository changeset_revision="89a9d6ce7f96" name="package_crest_1_0_1" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+          <readme>
+CREST requires: 
+  Bioperl package Bio::DB:Sam  
+  cap3 which only has binary executable downloads from:   http://seq.cs.iastate.edu/cap3.html
+          </readme>
     </package>
     <package name="shear" version="0.1.2">
         <repository changeset_revision="c2ab94f12a7a" name="package_shear_0_1_2" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />