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Fix test case
author Jim Johnson <jj@umn.edu>
date Thu, 30 Jan 2014 13:10:12 -0600
parents 08439b004404
children
comparison
equal deleted inserted replaced
0:08439b004404 1:b0276d1141fe
1 p(c|s): 0.999973; p(!c|s): 0.000027; adapter: solexa-reverse 1 p(c|s): 0.581352; p(!c|s): 0.418648; adapter: Multiplexing_adapter_2
2 SOLEXA2_0414:3:1:12658:1069#0/1 2 SOLEXA2_0414:3:1:17191:1069#0/1
3 AGATCGGAAGAGCGGT 3 CACTCTTTCC
4 |||||||||||| ||| 4 ||| ||
5 AGATCGGAAGAGNGGT 5 CACAAGTTTT
6 _______Q__BBBBBB 6 BBBBBBBBBB
7 [1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00] 7 [0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61]
8 8
9 p(c|s): 1.000000; p(!c|s): 0.000000; adapter: solexa-reverse 9 p(c|s): 0.534091; p(!c|s): 0.465909; adapter: Multiplexing_adapter_1
10 SOLEXA2_0414:3:1:3923:1105#0/1 10 SOLEXA2_0414:3:1:19703:1080#0/1
11 AGATCGGAAGAGCGGTTCAG 11 GATCGGAAGAGCACA
12 |||||||||||||||||||| 12 || || | | |
13 AGATCGGAAGAGCGGTTCAG 13 GAAGGGTATGGTTGA
14 b____YWWYYVVTVVYYYYY 14 BBBBBBBBBBBBBBB
15 [1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00] 15 [0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61]
16 16
17 p(c|s): 1.000000; p(!c|s): 0.000000; adapter: solexa-reverse 17 p(c|s): 0.581352; p(!c|s): 0.418648; adapter: Multiplexing_adapter_1
18 SOLEXA2_0414:3:1:9865:1095#0/1 18 SOLEXA2_0414:3:1:18860:1082#0/1
19 AGATCGGAAGAGCGGTTCAGC 19 GATCGGAAGA
20 ||||||||||||||||||||| 20 | || | |
21 AGATCGGAAGAGCGGTTCAGC 21 GGCCGCATGT
22 ______[[[[Y__________ 22 BBBBBBBBBB
23 [1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00] 23 [0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61]
24 24
25 p(c|s): 1.000000; p(!c|s): 0.000000; adapter: solexa-forward 25 p(c|s): 0.729153; p(!c|s): 0.270847; adapter: Multiplexing_adapter_2
26 SOLEXA2_0414:3:1:11267:1102#0/1 26 SOLEXA2_0414:3:1:13556:1104#0/1
27 AGATCGGAAGAGCG 27 CACTCTTTC
28 |||||||||||||| 28 || | ||
29 AGATCGGAAGAGCG 29 CAGACCTTA
30 BBBBBBBBBBBBBB 30 BBBBBBBBB
31 [1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00] 31 [0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61]
32 32
33 p(c|s): 0.999999; p(!c|s): 0.000001; adapter: solexa-forward 33 p(c|s): 0.745940; p(!c|s): 0.254060; adapter: Multiplexing_adapter_2
34 SOLEXA2_0414:3:1:13556:1104#0/1 34 SOLEXA2_0414:3:1:7605:1117#0/1
35 AGATCGGAAGAG 35 CACTCTTTCCCTACACGACGCTC
36 |||||||||||| 36 || || || | | || |
37 AGATCGGAAGAG 37 CAGTCACCACCCAAAAGAAAATA
38 BBBBBBBBBBBB 38 BBBBBBBBBBBBBBBBBBBBBBB
39 [1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00] 39 [0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61]
40 40
41 p(c|s): 0.999995; p(!c|s): 0.000005; adapter: solexa-forward
42 SOLEXA2_0414:3:1:13625:1097#0/1
43 AGATCGGAAGA
44 |||||||||||
45 AGATCGGAAGA
46 Y____BBBBBB
47 [1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00]
48
49 p(c|s): 1.000000; p(!c|s): 0.000000; adapter: solexa-reverse
50 SOLEXA2_0414:3:1:10939:1119#0/1
51 AGATCGGAAGAGCGGTTCAGCAGGAATGC
52 ||||||| |||||||||||||||||| ||
53 AGATCGGGAGAGCGGTTCAGCAGGAAGGC
54 BBBBBBBBBBBBBBBBBBBBBBBBBBBBB
55 [1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00]
56
57 p(c|s): 1.000000; p(!c|s): 0.000000; adapter: solexa-reverse
58 SOLEXA2_0414:3:1:12110:1126#0/1
59 AGATCGGAAGAGCGGTTCAGCAGGAATGCCG
60 |||||||||||||||||||||||||||||||
61 AGATCGGAAGAGCGGTTCAGCAGGAATGCCG
62 ____Y______YYYYYQWWWW___S_BBBBB
63 [1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00]
64