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Fix test case
author Jim Johnson <jj@umn.edu>
date Thu, 30 Jan 2014 13:10:12 -0600
parents 08439b004404
children
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0:08439b004404 1:b0276d1141fe
74 </stdio> 74 </stdio>
75 75
76 76
77 <tests> 77 <tests>
78 <test> 78 <test>
79 <param name="single_or_paired" value="pe"/>
80 <param name="input_fastq" value="reads.fastq" ftype="fastqillumina"/> 79 <param name="input_fastq" value="reads.fastq" ftype="fastqillumina"/>
81 <param name="adapter_file" value="illumina_adapters.fa" ftype="fasta"/> 80 <param name="adapter_file" value="illumina_adapters.fa" ftype="fasta"/>
81 <param name="add_tag" value="False"/>
82 <param name="matches_file" value="True"/> 82 <param name="matches_file" value="True"/>
83 <param name="prior" value="0.3"/> 83 <param name="prior" value="0.3"/>
84 <param name="min_match" value="5"/> 84 <param name="min_match" value="5"/>
85 <param name="min_keep" value="35"/> 85 <param name="min_keep" value="35"/>
86 <output name="output_trimmed" file="trimmed_sequences.fastq" ftype="fastqillumina"/> 86 <output name="output_trimmed" file="trimmed_sequences.fastq" ftype="fastqillumina"/>