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annotate test-data/trinity_assembled_transcripts.fasta @ 3:d7d4d662b0e9 default tip

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Add test output assertion in rsem_prepare_reference.xml
author Jim Johnson <jj@umn.edu>
date Fri, 07 Feb 2014 06:54:54 -0600
parents f6b8155ab12a
children
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2
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1 >comp6_c0_seq1 len=235 path=[2595:0-234]
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2 CGGCCAGGGGCTTGTGGAGGTTAAAGTTTCTGTACAGTCCGCTTCCAGTCTCGTGTATCT
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3 TCTCTGGAGTGTTGTTTTGCAGTGCGGGGTGAGCTGGTGTGGGTGTTTGAATGCTGCTGT
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4 TTGCTGTTTTTTAAAGGCCTTCTAGCCCTCCCATGGGGTTGCTGCAGCAGGAATTCTTAC
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5 CTGTGCTTCAGCCCAGCATACAGACTGCTGACAGGCACCACACAGTCACTCGAGG
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6 >comp12_c0_seq1 len=239 path=[4973:0-238]
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7 GGGTCATGGCCCGCACGGTCTCTGAGAGAGAGAAAGAGAGAAGGGAGACCACGTTTGGGA
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8 TAGCTGGGGCTCAGGGCCAAGCCTGGGGATAGTCTGCAGATGCAGGTGGGGTGCCAGGAG
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9 GAGGGAGCAGGCTGCAAAGGCGTCTTGCAAGCAGTGTACTTCCTGGCTCCCGGAGTTCGG
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10 TGTGGGTGTCGGGAAGGGGAGATTCCCCGAGGAAAGAAAATGGACTTGAAGACAAGTCC
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11 >comp17_c0_seq1 len=215 path=[7123:0-214]
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12 AAGCTGGCCTCAAATTCCTGATCCTTCTGCCTCGTTTCCCCAGTGCTAGGATTATATGTG
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13 TGCCACCATGATTTCTTTCTTTAGTTTTGAACATAGTCAGGCTGTCCTGGAACTCACAGA
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14 TATATATGCTTGCCTCTGCCTCTCAAGCACTGCGGTTAAAGTATGGTCCTTTGAAGTCGC
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15 TGCTCTAAGTGCCAATGAAAAGAAAAGCTAGACAG
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16 >comp18_c0_seq1 len=329 path=[7445:0-328]
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17 TTTTCTTATATCGCCTACATATTTTCCCAAATCAGCATTACCAAGCTGCTGCCCTAGATG
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18 CCTTGGGTCAGACCTGTGCTGTCCGTTGTCTCCGCTGCAGCTAGCCTCTGAGAGAGAGGA
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19 GTTGGCAGAGATTAGGGTATAATGCCATTAAAATGTGTAGTCGGAATGTAGCTCTGGAGC
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20 TAGGCGATTACTGTTCCCATGTTTCTGTTTCCCCTTTAAACACTCTTAAAACTCGTACAA
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21 AAGCACCTCATTGTCCCAATGTTCAGTATAAGCTGGCAGATAACCCTTGCTGGGGTATGG
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22 GATCTCCGAGGTCCTTAGCCTCTAGGGTG
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23 >comp21_c0_seq1 len=307 path=[8941:0-306]
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24 GTCCTGCGTTTAGTAGCTGAGAGGTAGAGGGTGTTTTACAAAGTCCCATAAACAACTCTT
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25 CTCTGTAGGAGTAAGTCAGTAAGTTAAAAATATTGCTTTATCTTGATTGAGTATAAACCA
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26 CATTAAATTAAAAGTAAAATTAAAGTAAGCCACTTTACCATTCAAAGAAACAACCTAATA
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27 ACTAATTTACAAACCTTTCCCCACGAGGACAAAAGACTTCTAATGGTTTAACAATACTGA
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28 GAAAGGGTATTACACAAATAATTATAATAAACAACACAGTCCCTATTCTCTCCAAGCTAA
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29 ATAATTT
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30 >comp23_c0_seq1 len=253 path=[9973:0-252]
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31 GTTAGGGCCAGTTTGAACACAATGACCTTTGGGTGACACTATTCAAATTATGACAGTTGA
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32 TTTAACAAGAAAATCCTTTATACCTAAGACCTATGCCTCCATAAGTTAAGACCCAGAACA
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33 TACACTAGAGTGACCTTTGGAAGAAATAAGAATGCCTGTTCTTTTTAGAAAATATCTGTA
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34 AAACAACCTAGTCTTTGGCAGCACCTAGAAAACATAATTCTAGTTGCTCTGTGTGTGTGT
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35 GTGTGTGTGTGTG
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36 >comp26_c0_seq1 len=204 path=[12154:0-203]
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37 CGGTATTCCTCAGGTGAGAATTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTA
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38 TTTGATTTTCTGGAGTCCACCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCC
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39 CTGTCTGATTTAGGATAGGCAAAGATCCTTTCCAAATCTGTTGGTGGCCTTTTTGTCTTA
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40 TTGATGGTGTCTGTTGCCTTTCAG
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41 >comp26_c1_seq1 len=220 path=[11776:0-219]
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42 AGGCAGTCTTAGCAAAGTATGATGGTCAAATCTAAGTGGATCAAGGAACTCCACATAAAA
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43 CCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTCGAAGATATGGGCACA
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44 GGGGAAAAAGACCTGAATAGAAAAGCAATGCCTTGTGCTGTAAGATCGAGAATCGACAAA
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45 TGAGACCTCATAAAATTGCAAAGCTTCTGTAAGGCAACAG
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46 >comp30_c0_seq1 len=592 path=[14943:0-217 14374:218-591]
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47 CTCTGTAACTCCCGACAAGAGCCACGGACGGACCTGGGGCTGCCAGTGATTGGAAGGCCT
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48 AGGCACTTCACAGGCCTCTTTGCTCTGTAGCTTCTTCTTTATAGGTGTGGACAGGGAGGA
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49 GGGTGCGGAGGGCTCTTAAGAAGGAAGGTGGCCTGGGTATGAGAGATGCACATCTCAGCT
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50 GGGCTTCTGTAAGGAAATACATGAGGCTATCCTGGGATATCTCAAAGGGGGCCTTCCTCA
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51 GTCACCCATTCGGGATATAAGGAAGAAAGAATAGGTCATTACACACAGGGGGACTGGAGC
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52 GGAGTGTCAGCCTTCATATAACTTCAGTGGGAAGAGCAGGTGTAGTATAGCGAGGAAGAC
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53 CACTGTATCTTGGCATGCAGTGGGGGAAAGGAGGAATTATAGACCTCAGAGTGACGCTTC
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54 TGGTCTCAGTCAAGTTAATGCTCCCCAGAAACAGAAAGCACACAACCAAAGCTGGTCTTT
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55 ACTTTGAAGTTTCGTGATGACATTGTCTTCATGCTGCACTCTGGTTGAGCCCCCTCCTGC
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56 TCCCTCTGGTGCCCACACATTAGGGTGTGGGACTGTACAGGGTACATACAAC
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57 >comp32_c0_seq1 len=3739 path=[19885:0-394 23839:395-436 20280:437-3738]
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58 GGAGCTGGAGGCCCCCAGGCAACTACACCGTCCACGTACCCAGAGGGGCTGGGCCCTCCC
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59 ACCAGAGACCACGCCCTGGTGTGCCTTAGGGGCCCTGGTTTGTTAGTCTCTGAGTGTGCA
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60 GTTGCTGCACATGGGGCCCTGGCGCTTGCTGCACCAACTTCCTGTTGGGCCCGTGGTCCT
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61 TGGAGGCATGCAGTTCAGCAGACAGTGACTCAGCCATCCACCCAACATGCGGAACGTGTC
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62 TCTTCTGCAGGTCCCGGTCCACAGCAGGATTCCCCCTCTGTGAAAAGGCACGCTGATCTG
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63 TCTGGATAAGTGTGGCCGGCCCCATGTATCCGGAATCAACCACGGGGTCCCCAGCTCGAC
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64 TCTCCCTGCGGCAGACAGGCTCCCCCGGGATGATCTACAGTACTCGTTATGGGAGTCCCA
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65 AAAGACAGCTCCAGTTTTACAGGAATCTGGGCAAATCTGGCCTTCGGGTCTCCTGCCTGG
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66 GGCTTGGAACATGGGTGACCTTCGGGGGCCAGATCACGGATGAGATGGCAGAGCACCTAA
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67 TGACCTTGGCCTACGATAATGGCATCAACCTGTTCGATACGGCGGAGGTCTACGCTGCTG
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68 GAAAAGCTGAAGTGGTATTAGGGAACATCATTAAGAAGAAGGGATGGAGACGGTCCAGCC
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69 TTGTCATCACCACCAAGATCTTCTGGGGTGGAAAAGCGGAGACTGAGAGAGGCCTTTCCA
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70 GGAAGCACATAATTGAAGGACTGAAAGCGTCCCTGGAGCGGCTGCAGCTGGAGTACGTGG
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71 ATGTGGTTTTTGCCAACCGCCCAGACCCCAACACGCCCATGGAAGAGACCGTGCGGGCCA
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72 TGACCCATGTCATCAACCAGGGGATGGCCATGTACTGGGGCACATCACGCTGGAGCTCCA
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73 TGGAGATCATGGAGGCCTACTCGGTGGCTCGGCAGTTCAACCTGATCCCGCCCATCTGCG
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74 AGCAAGCGGAATATCACATGTTCCAGAGGGAGAAGGTGGAGGTCCAGCTGCCAGAGCTGT
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75 TCCACAAGATAGGAGTAGGTGCCATGACCTGGTCCCCTCTGGCGTGCGGCATCGTCTCAG
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76 GGAAGTATGACAGCGGGATCCCACCCTACTCCAGAGCCTCCCTGAAGGGCTACCAGTGGT
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77 TGAAGGACAAGATCCTGAGTGAGGAGGGTCGCCGCCAGCAGGCCAAGCTGAAGGAACTGC
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78 AGGCCATTGCCGAACGCCTGGGCTGCACCCTACCCCAGCTGGCCATAGCCTGGTGCCTGA
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79 GGAATGAGGGTGTCAGCTCCGTGCTTCTGGGTGCTTCCAATGCAGAACAACTTATGGAGA
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80 ACATTGGAGCAATACAGGTCCTTCCAAAATTGTCGTCTTCCATCGTCCACGAGATCGACA
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81 GCATTCTGGGCAATAAACCCTACAGCAAAAAGGACTATAGATCCTAAGTCTACTCCCCAC
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82 CCCTCGTGCCCCACCCGGACAGTTCCCGGTTCCCTCCTCGTCTCTGTTCGCTCGCTTCTG
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83 CTGTTCCAAAGCCAAATGCAGAGTGTGGTTCACATCCAAAGGGAAATCACTATGCCCAGA
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84 CGTGACAGGGAATCGACCTCCAAAGTCACCGCCAGATGCCGCCTGCCGCTTCTTCACTGG
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85 ATACTGTCCGACAACGGATGCCAGGGGATGGCATCAGTTAGGGGGACATCCAGAGGCTCC
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86 CGCCCAAGCCCACCACCTCTGCTTATCCTTCAAGAAGAAACACTTGCCCCCAGCCATGGC
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87 CCTTCACGGAAATTCTAGAAGCCATGGCCGGGTGGAGGTCTCATCCTTAGAGCAGGAGGG
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88 GCCGCCAAGAGCCCATCTCAAAAGAGGGGTGTGCACCCTTCTCCCAGAGTCCTGGTGGTT
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89 AGAGCAGGGCCCTCCCTCTTTCCATGGACACCAGGTACTTTGCTCAAGGCTGGCCTGGAT
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90 CCCATTCTTCCTAGGTCTTGACCTGCCCCACATACCCACCGAGCCTTGGCTGACATAGCT
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91 ACCCAGCTGGCCCTTGGCCCCCACCCTCCCCCTTGCTGGCAGGGCCAGGGATTCCAGCTG
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92 GCTTTCCCAGCATCTTCCAACTGCTGAGCCCCACAGCAGGCAAGCTCAGCAGGCTTGGAT
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93 GGAGCCCATCGGAGTATGCCTCTCAAGACAGACACTCGTGGGCAAGTGTGGCAGCTGGCC
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94 CCACCGCAGGCAGGTGGCAGCAGGCTTGCAAGACCATATTGCTCTCACAGACCTTCCAAT
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95 ACCTCTGCTGTACCGGGGCAGTGGGCTCATGATGTGGGCTTTGCCCAGATGAAGCACTTA
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96 GAGCTATGTTGCAAGCCAGGGAACTACGGGAGCAGCTCCAGTAATAGTCTCCGTGTTTTA
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97 AGAATAGATCCCAGAGCTTCTCCCTGGAAAAATGGCTAGGACCACCCATTCCCTTCTGCG
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98 TACCCTCATGCTGGCCTAGGGCAGGATGGGGAGAGGAAGTAGTGGAAAGGATAGGCAGCC
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99 CTTTATCACTGGGATAAATCCTGCATGGATGTTGATGCCAGGGAGCCTGCGGGATTGGTC
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100 AGTACACACTGCCTGGAGGCCCCATCCCATGGTTTTGTGATGCTCTGGGGGACAGGGTCC
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101 TACCCAGCTGCCTCCCTAGGAGACCAGCCTCCTGCCCTGCTGCACAGACCATGGCCAGCT
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102 CCCAGGCACAAGTCCTAGATGCTTAGCACCCTAGCTTTGCCTTCTGTAGCTGCTATTACA
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103 AGGCTGCTCCTTGCTGCTCTTAAGGCTGGGCAGAGGTGAGGACAGGGGTGGGGGTTGGGG
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104 GGGTTTATGGGGAGGAGACAGGAAGAAAGGCAGACAAACCCCCCCCCGAAAACCCTGAGC
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105 TCTCTAACCTTCGCTGCTCATAGTGCTGACCCTAAGACCTCAGAAGCAGCTCTGTGTGTG
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106 GGGGGATGGAGACCATGGGCTCTGGTATTTCCATGCCTGGCTAGCAGAGCCAGCTTTCTG
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107 GACAGGGCCCTGCAGTGGCCCAGCAGGAAGTACCAGACCTGTCCACACAGCTGGCCTTGG
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108 CCCTGCTTGTTAGGTGGGCCAGGCATGCAGGGATGCCCACAGTGGGAGCTACTGCCTGCC
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109 TGTGAACCACACCTCAGAGCTAAGCTCCTGCTGGTGATGTGCAAGAGACAGGAAAACAGG
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110 CTGCCGGGCTAAGGCCCATAGGATTTAGCCCACAGGAGCCCTAGATGCAAAAGACATGTT
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111 AACCAAGTGTTTCTGAGAGGTTGTCTTCCACACCCACTCTCGAAGCGTCAGGGATTTGCT
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112 TCTTAAACTTCTGCGGAGGGGTTTGGCTTGGGAGGCCATGTAGAGCAAGTACAGACAGCC
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113 TGTTAGTGGGAGCTTGCCCCCAGGCCCTCAAAGGGTGTAAGGCCAGCTCCTTCCTCCATG
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114 GCCTCTCCTTCCTTTAGCCCAGCTGCCTGCAGGCCAGCCCAAGCCAGCTTCTCTTCACCT
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115 TGAAGTAGTCTGCCAGGCCTGGTGCAGGAGGAGGGCCATGTAGAGAGAGGATCTGGCACT
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116 CGGAGCCCAAGGTCCCAAGGCACAGCAGCGCACCTGTGTGCCTGCTCTCCTCATGTACAT
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117 ACATAACGTGCTTTCTCTCCCCGTTTTTTGTTTGTTTTTTTTTAAACGAGCGTGGCTCCT
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118 CGCTAACTGCACCCCACCAGGCCGACAGCAAACGCCTCCAGCTTCCCGACAGACTCAGAC
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119 CAAGGTGCGGCCCCGTATTTATGGAATGGCAAATAAAACCCGAGCCCTTTGGTCTCCACG
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120 TTTCTGATCTCTCCTTTCC
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121 >comp32_c0_seq2 len=3697 path=[19885:0-394 20280:395-3696]
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122 GGAGCTGGAGGCCCCCAGGCAACTACACCGTCCACGTACCCAGAGGGGCTGGGCCCTCCC
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123 ACCAGAGACCACGCCCTGGTGTGCCTTAGGGGCCCTGGTTTGTTAGTCTCTGAGTGTGCA
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124 GTTGCTGCACATGGGGCCCTGGCGCTTGCTGCACCAACTTCCTGTTGGGCCCGTGGTCCT
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125 TGGAGGCATGCAGTTCAGCAGACAGTGACTCAGCCATCCACCCAACATGCGGAACGTGTC
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126 TCTTCTGCAGGTCCCGGTCCACAGCAGGATTCCCCCTCTGTGAAAAGGCACGCTGATCTG
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127 TCTGGATAAGTGTGGCCGGCCCCATGTATCCGGAATCAACCACGGGGTCCCCAGCTCGAC
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128 TCTCCCTGCGGCAGACAGGCTCCCCCGGGATGATCTACAGGAATCTGGGCAAATCTGGCC
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129 TTCGGGTCTCCTGCCTGGGGCTTGGAACATGGGTGACCTTCGGGGGCCAGATCACGGATG
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parents:
diff changeset
130 AGATGGCAGAGCACCTAATGACCTTGGCCTACGATAATGGCATCAACCTGTTCGATACGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
131 CGGAGGTCTACGCTGCTGGAAAAGCTGAAGTGGTATTAGGGAACATCATTAAGAAGAAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
132 GATGGAGACGGTCCAGCCTTGTCATCACCACCAAGATCTTCTGGGGTGGAAAAGCGGAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
133 CTGAGAGAGGCCTTTCCAGGAAGCACATAATTGAAGGACTGAAAGCGTCCCTGGAGCGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
134 TGCAGCTGGAGTACGTGGATGTGGTTTTTGCCAACCGCCCAGACCCCAACACGCCCATGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
135 AAGAGACCGTGCGGGCCATGACCCATGTCATCAACCAGGGGATGGCCATGTACTGGGGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
136 CATCACGCTGGAGCTCCATGGAGATCATGGAGGCCTACTCGGTGGCTCGGCAGTTCAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
137 TGATCCCGCCCATCTGCGAGCAAGCGGAATATCACATGTTCCAGAGGGAGAAGGTGGAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
138 TCCAGCTGCCAGAGCTGTTCCACAAGATAGGAGTAGGTGCCATGACCTGGTCCCCTCTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
139 CGTGCGGCATCGTCTCAGGGAAGTATGACAGCGGGATCCCACCCTACTCCAGAGCCTCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
140 TGAAGGGCTACCAGTGGTTGAAGGACAAGATCCTGAGTGAGGAGGGTCGCCGCCAGCAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
141 CCAAGCTGAAGGAACTGCAGGCCATTGCCGAACGCCTGGGCTGCACCCTACCCCAGCTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
142 CCATAGCCTGGTGCCTGAGGAATGAGGGTGTCAGCTCCGTGCTTCTGGGTGCTTCCAATG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
143 CAGAACAACTTATGGAGAACATTGGAGCAATACAGGTCCTTCCAAAATTGTCGTCTTCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
144 TCGTCCACGAGATCGACAGCATTCTGGGCAATAAACCCTACAGCAAAAAGGACTATAGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
145 CCTAAGTCTACTCCCCACCCCTCGTGCCCCACCCGGACAGTTCCCGGTTCCCTCCTCGTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
146 TCTGTTCGCTCGCTTCTGCTGTTCCAAAGCCAAATGCAGAGTGTGGTTCACATCCAAAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
147 GAAATCACTATGCCCAGACGTGACAGGGAATCGACCTCCAAAGTCACCGCCAGATGCCGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
148 CTGCCGCTTCTTCACTGGATACTGTCCGACAACGGATGCCAGGGGATGGCATCAGTTAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
149 GGGACATCCAGAGGCTCCCGCCCAAGCCCACCACCTCTGCTTATCCTTCAAGAAGAAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
150 CTTGCCCCCAGCCATGGCCCTTCACGGAAATTCTAGAAGCCATGGCCGGGTGGAGGTCTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
151 ATCCTTAGAGCAGGAGGGGCCGCCAAGAGCCCATCTCAAAAGAGGGGTGTGCACCCTTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
152 CCCAGAGTCCTGGTGGTTAGAGCAGGGCCCTCCCTCTTTCCATGGACACCAGGTACTTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
153 CTCAAGGCTGGCCTGGATCCCATTCTTCCTAGGTCTTGACCTGCCCCACATACCCACCGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
154 GCCTTGGCTGACATAGCTACCCAGCTGGCCCTTGGCCCCCACCCTCCCCCTTGCTGGCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
155 GGCCAGGGATTCCAGCTGGCTTTCCCAGCATCTTCCAACTGCTGAGCCCCACAGCAGGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
156 AGCTCAGCAGGCTTGGATGGAGCCCATCGGAGTATGCCTCTCAAGACAGACACTCGTGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
157 CAAGTGTGGCAGCTGGCCCCACCGCAGGCAGGTGGCAGCAGGCTTGCAAGACCATATTGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
158 TCTCACAGACCTTCCAATACCTCTGCTGTACCGGGGCAGTGGGCTCATGATGTGGGCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
159 GCCCAGATGAAGCACTTAGAGCTATGTTGCAAGCCAGGGAACTACGGGAGCAGCTCCAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
160 AATAGTCTCCGTGTTTTAAGAATAGATCCCAGAGCTTCTCCCTGGAAAAATGGCTAGGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
161 CACCCATTCCCTTCTGCGTACCCTCATGCTGGCCTAGGGCAGGATGGGGAGAGGAAGTAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
162 TGGAAAGGATAGGCAGCCCTTTATCACTGGGATAAATCCTGCATGGATGTTGATGCCAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
163 GAGCCTGCGGGATTGGTCAGTACACACTGCCTGGAGGCCCCATCCCATGGTTTTGTGATG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
164 CTCTGGGGGACAGGGTCCTACCCAGCTGCCTCCCTAGGAGACCAGCCTCCTGCCCTGCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
165 CACAGACCATGGCCAGCTCCCAGGCACAAGTCCTAGATGCTTAGCACCCTAGCTTTGCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
166 TCTGTAGCTGCTATTACAAGGCTGCTCCTTGCTGCTCTTAAGGCTGGGCAGAGGTGAGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
167 CAGGGGTGGGGGTTGGGGGGGTTTATGGGGAGGAGACAGGAAGAAAGGCAGACAAACCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
168 CCCCCGAAAACCCTGAGCTCTCTAACCTTCGCTGCTCATAGTGCTGACCCTAAGACCTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
169 GAAGCAGCTCTGTGTGTGGGGGGATGGAGACCATGGGCTCTGGTATTTCCATGCCTGGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
170 AGCAGAGCCAGCTTTCTGGACAGGGCCCTGCAGTGGCCCAGCAGGAAGTACCAGACCTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
171 CCACACAGCTGGCCTTGGCCCTGCTTGTTAGGTGGGCCAGGCATGCAGGGATGCCCACAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
172 TGGGAGCTACTGCCTGCCTGTGAACCACACCTCAGAGCTAAGCTCCTGCTGGTGATGTGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
173 AAGAGACAGGAAAACAGGCTGCCGGGCTAAGGCCCATAGGATTTAGCCCACAGGAGCCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
174 AGATGCAAAAGACATGTTAACCAAGTGTTTCTGAGAGGTTGTCTTCCACACCCACTCTCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
175 AAGCGTCAGGGATTTGCTTCTTAAACTTCTGCGGAGGGGTTTGGCTTGGGAGGCCATGTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
176 GAGCAAGTACAGACAGCCTGTTAGTGGGAGCTTGCCCCCAGGCCCTCAAAGGGTGTAAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
177 CCAGCTCCTTCCTCCATGGCCTCTCCTTCCTTTAGCCCAGCTGCCTGCAGGCCAGCCCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
178 GCCAGCTTCTCTTCACCTTGAAGTAGTCTGCCAGGCCTGGTGCAGGAGGAGGGCCATGTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
179 GAGAGAGGATCTGGCACTCGGAGCCCAAGGTCCCAAGGCACAGCAGCGCACCTGTGTGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
180 TGCTCTCCTCATGTACATACATAACGTGCTTTCTCTCCCCGTTTTTTGTTTGTTTTTTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
181 TAAACGAGCGTGGCTCCTCGCTAACTGCACCCCACCAGGCCGACAGCAAACGCCTCCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
182 TTCCCGACAGACTCAGACCAAGGTGCGGCCCCGTATTTATGGAATGGCAAATAAAACCCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
183 AGCCCTTTGGTCTCCACGTTTCTGATCTCTCCTTTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
184 >comp33_c0_seq1 len=239 path=[24185:0-238]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
185 TGACTACGAAATTCATAAATTCATTATTTTTAATAGCTGAGTAGTACTCCATTGTGTAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
186 TGTACCACATTTTCTGTATCTATTCCTCTGTTGAGGGACATCTGGGTTCTTTCCAGCTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
187 TGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTTCTTCTTACCGGTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
188 GGACATCTTCTGGATATATGCCCAGGAGAGGTATTGCGGGATCCTCCGGTAGTACTATG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
189 >comp35_c0_seq1 len=433 path=[25997:0-432]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
190 AAAAGTATTTGGAATTTTGATTAGTTGGATTTCATTCTGTTTTACTTCATAATAACTAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
191 TATAGTTTGTGCTGAGACTGAATTGTTATTTAGGAAGAAAATTGCTTGTGCATTGTTTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
192 TCCTGTCCTGAGAGCAGTGGTTCAATACATCTCAGAAATCGATATTCCGGTCGCCTATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
193 TAGGAATAAAACTAATCAGGTGCAGAAAAATTTAATTCTTTTATCAGTGAAAGAAAACAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
194 CACAATTTGAAGCCAAGTCTCAGTATCAGGCCTGCACAGCCACTCTCTCAGGGACTCCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
195 CTAAGTAAAACTTAGAAAATGGAGCTGGGGGTTTTCTAAACAGTCCCAATAGATCCCCTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
196 AGTGTTTGGTTTTCTTCCTCATTTGAAAACCGTGTGTTGGTGCTCGAGTTCACAGAAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
197 AATAGGGTCTAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
198 >comp36_c0_seq1 len=280 path=[28100:0-279]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
199 GGTATGCTTACTGGAAATGTAGAAATCTCTTCTTGTGTTTGTATACCAGACAGAGGTGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
200 ACAGCATTAGGAGGCTGACCTGGGCAGCCACCTGGCAGGGAGGGGCCTGAGAGAGCAGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
201 AGTTTGTGGTCGAGGAACTGACTCAGGACCTGGCAGGGCCACTGTAGAGGCAGAGGTAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
202 GAGACAGGCCATACTTGCTGATCCCATACATCTTGAAATCAGAGGGCTGGGAGTTAGTAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
203 CTCATGTTTTCCTCTCTACTTTCTTTATTTGACAGCTCAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
204 >comp36_c1_seq1 len=361 path=[27505:0-360]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
205 AATGGCGGAGCGTGTATATCTGAATGGCACTTTCTAATCCTGAGATACTGTGAATCTTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
206 ATTCATGATATTTTGTTCCCCAGTTTTATTTATGTGATGTTCTGACTGGCTCCAGACCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
207 TGGGCTGTTTGGGTATGAACTGTGAGAATGTGAGAATGCTTGTAGTGGAAGGGAACCAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
208 ATGGCTTTTAGAAATAGGAAAACTCCACACAGAGCCTTGTGAGACGGGGAGAGACAACCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
209 TAGAAGAAAGCGTCTGCCTTGCTTGCTAAGAACCACTTTCCCCAGAAGAGGCCTGATCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
210 TTCTGTCAGAGCATGATGGTGAATATCCTAATTTTGGCATAGTGAGCTGTCAAATAAAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
211 G
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
212 >comp37_c0_seq1 len=562 path=[29223:0-561]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
213 TGGTTTTCAGTCCTCTCCTGAGATAATGCCCTGGGTGTGATGACTTTTAGTAGATGCAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
214 GAGATTGCTCTGCCACCCTCCAGGCTCCACAGCGTGGGAACTCTTGCATGTTTGTTCACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
215 AACACAGCCAGTCCCAGCACCCTTAGACAGTGAGTCACTGGAGAGGCGTGAGTAGAGAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
216 CTGAGACTGGCTGCCTACAATCTAATCTACCTCGATAACTTAGGACTAACTCTTCCTAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
217 ATGTTTGGTTCTTAAGATAAGGCAGCTCATATAAGTAAGCTATCACACAGGCCCAGCTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
218 GCTCAGAATGGGGGAAGGTCAGCACTCTGACCCCTTCTGCTCTCGAGGGCCTGTCTTTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
219 TCCTCGGCTCTTACTCCTTTGAGACTGCACCCCCTAACTTCTGTCTCATCTTCATTTATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
220 GGCCTGGACTCTTTGAAGTCTGATATTGATTACAGTGGGATGTCAATTGTCTGCTTGCGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
221 CAGGGCACCTGGAACCTATTCAGATAAGCAAGAGGTTTCCACTGTGAACCCAACGAGCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
222 CGAGCTGTGACCTTGCTCTCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
223 >comp38_c0_seq1 len=301 path=[30301:0-300]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
224 GCCTCTTCCTGAGAAATAACAGGGAGGGTTTCACTGTGTGCTGATCATGCCTTCACCCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
225 GGCTGGATCACTTTTCTTTAAAAACTTTATTTGTGTGTGTGTGTATGCACATGCGTATGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
226 ATGCATGGGTTCCCACAGAGGCCAGAGGAGGGCATTGAATCCCCTGGTACTTGAGTTACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
227 GGTATTTGGGACCCACTGCATGTGAGTGCCGAGAGCTGATTGCAAGAGCAGCAAGCACTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
228 CTAATAAGTGACCCATCTCTCCACCCCCTTGATTTTATTTTGTAACATTACTGTGGTGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
229 G
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
230 >comp40_c0_seq1 len=272 path=[31987:0-271]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
231 GAACACAGCCCATTGCTAAACTGGGAAGGATGGATAATCCATCCTGCAGATTCTCAACCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
232 TCCGAATGCTGTGACCCTTTAATACAATTAATTCCTCATTACAGCCCCCCCCACCGTAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
233 ATCATTTCCATTGCTACTTTATAATTTTGCTACTGTTATTGATCATAATGTAAATCTCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
234 TGTTTTCTGAGAGGTCTTATGCCAGACCCTATGAAAGGGTGATGCCCATAGGTTGAGAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
235 TGCTATCAGAGGGTAACTATCCTAAGTCTTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
236 >comp40_c1_seq1 len=324 path=[33016:0-323]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
237 GGCAATTAAGTACTACATAAGAAAAAGAGACCCTCACATAAAACTTCCTCTCTTGAAGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
238 TCAAAGGCAAGGGATAGAGGGAGCACAGACATTAAGATGTGGACAGAGTAAAGTTGTACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
239 TATAGGTCATGGTAGCAGTTAGGGTAGACGCCCAGGGGTGTTCAGAAAAGGAAGAGAAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
240 CAGGCTATAGAAGAGGGGACAAGTGTTGAGAAAATCAACAGACTCCACTGGATGGAAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
241 ATGTCAGAAGGTGTGCTGTCAGTGCCGACATCGTAGATATGCATGAAGTGAACACTCTAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
242 GTCTAACTAATGGTCAGAATATGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
243 >comp41_c0_seq1 len=3823 path=[37117:0-2116 39234:2117-3822]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
244 GCCAGGGTGACCACTAGACTGAGCTGGGGCGAACCCTGGGCGGGGGCGGGGGCCGAGGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
245 CGGGGCCGCAGTCGTTGTTCCAGCTGCCACCGTGACTGGCCTAGGTCCGCCTCCGCCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
246 GCTGGGCCCGGCTGAATCAGACCTCGGGCGTCCGGCGGCGGGTCTGCTGCCGAACGGAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
247 GCGCAGGTGAGCCTAGGACGCTGAGCGCGCTGCCCTACTCTGCCTCGGCGGGGTGGAGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
248 CTGGCCGGGGGTGCTGGACAGACTTGTGCAGCTCCGTGAAGTGCAGCCCCGACCCCCTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
249 CGCCTGTTCTCACGAAGTCGCTTTTAAGACTAGCGAGCTGACTTCGGGGAGCCAAGAGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
250 TTTTCTGCGTTTCCTCAGGCATCGGTGAGAACTCTCAAGTCTCCAGCCATGCAGCTACAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
251 GCCCTCCTCCAAAAGGACCGCCCCATGCCACAAAGGGAGCCACTCGAGTTTTCATGGCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
252 CGAGCTGGCGAACTCTGACGTGCATCCTTGACAACAAGAGTTGCTTGTTAACCTCCCAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
253 GAGGATCCCTTTCCTTAGGAGGGCCAGGCTGAGGGGGTCAGGGCTGGCCAGGTCTGGACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
254 ATGCCATCCAAGTCAGCTTGCCTGCGTCACACTGAGGCACCTGGGCAGCTAGAAGGCAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
255 ATGCTCCAGGGACAGCCTCCGAACACGGAAAAGAAGCTCATCCCAACACCAGGCTTCTTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
256 CCAGCCTCTGACTCTCAGGGTTCAGAGACAAACCCCATGCCTCCTTTCAGCATTCCAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
257 AAAACAAGCAACCAGAACCCACAAACTAAGGCAAATCTCATCACCCCACAGCCACCCATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
258 AGACCCAAGTTGGAGCGAACCCTGTCCCTCGATGACAAGGGCTGGAGAAGGAGGCGTTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
259 CGGGGTAGTCAGGAGGATCTGACTGTCCAGAATGGGGCCAGTCCCTGCAGGGGCTCCTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
260 CAAGACTCAGTAGCCCAGTCCCCTGCCTACAGCCGTCCCCTGCCCTGCCTCAGCACATCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
261 TTGCAGGAGATACCTAAGTCCCGAAGGGCCACAGGCAGTGAGGGAGGGAGCCCATCCTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
262 TGGAGTGACTGTCTTTCTGGAATGATCAGCACCTCCTTGGACCTCCTGCACAGAGATGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
263 GCCTCAGGTGGGCCCCCCTCCAGGTTGGCAAGTTTGCATGCCTCACACACACCACCAGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
264 ATGGACCTCAGCATAGCCTCCAGCTCCCTGAGAACAGCAAACAAGGTTGACCCCGAGCAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
265 ACGGACTACAAGCTCCGCATGCAGACCAGACTGGTCAGGGCCCACAGCAACCTGGGCCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
266 AGCAGACCCCGGAGCCCCTTGGCTGGTGACGATCACTCCATTCACTCAGCCAGATCTTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
267 AGCCTTCTGGCCCCCATCCGCACCAAGGACATCAGAAGCAGGAGCTATCTGGAGGGAAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
268 CTTCTGGCCAGTGGGGCCCTGCTAGGAGCAGAAGAGCTGGCCAGGTACTTCCCAGACCGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
269 AACATGGCTCTCTTCGTGGCTACCTGGAACATGCAGGGCCAGAAGGAGCTCCCAGCGAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
270 CTGGATGAGTTTCTGCTCCCCACCGAGGCTGACTACACTCAGGACCTGTATGTCATTGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
271 ATTCAGGAGGGCTGCTCTGACAGGCGGGAGTGGGAGACACGCCTGCAGGAGACACTGGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
272 CCTCAGTATGTACTGCTGTCATCAGCAGCACATGGGGTCCTGTACATGTCCCTGTTTATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
273 CGTAGGGACCTCATCTGGTTCTGCTCAGAGGTCGAGTACTCCACAGTAACTACACGCATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
274 GTGTCTCAGATCAAGACCAAGGGGGCCCTGGGCGTCAGCTTCACCTTTTTTGGCACCTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
275 TTCCTCTTCATCACATCTCACTTCACCTCTGGAGATGGGAAGGTAGCAGAGCGGCTACTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
276 GACTACAGCAGAACCATCCAAGCCCTAGCCCTGCCCCGGAATGTGCCAGACACAAATCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
277 TACCGCTCTAGTGCAGGGGATGTCACTACCCGGTTTGATGAGGTCTTCTGGTTTGGGGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
278 TTCAACTTCCGCCTGAGTGGTGGACGAGTGGCTGTGGAGGCCTTCCTGAAGCAGAAACCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
279 GAGGTGGATGTGCTGGCTCTCCTCCAACACGACCAGCTCACCCGGGAGATGAAGAAAGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
280 TCCATCTTCAGGGGCTTTGAGGAGGCAGAGATTCACTTTCTTCCATCCTACAAGTTTGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
281 ATTGGGAAGGACACCTACGACAGCACCTCCAAGCAAAGGACACCCTCCTACACAGACCGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
282 GTCCTATACAAAAGCCGTCACAAGGGTGACATCTGTCCCATGAAGTATTCCTCTTGTCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
283 GGGATCAAGACTTCAGACCACCGTCCTGTGTATGGCTTGTTCCAGGTGAAAGTGAGGCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
284 GGACGAGACAACATCCCATTAGCTGCCGGCAAGTTTGACCGAGAATTGTACTTGATAGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
285 ATTAAAAGGCGGATTTCAAAGGAGATTCAGAGACAGGAAGCACTGAAGAGCCAGAGCTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
286 AGTGCAGTTTGCACCGTGTCCTGAAGATTCCAGACCAGGACTGGCCACAGCAACGGGGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
287 CAAGGTCACTGCAAAGGATGGGCTTCTTCTCAGCTGCTCCTGTAATGCTGGGATTCTAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
288 CCACCACGGCCAGGGGCTCCCTGCTCTCACCACAGACCCAGCCCTCAGGACATTTATACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
289 ATGTTCCCACAGGCACATGGCAGGGCATGTGGACACCAAGCAGCAGTTTTGTCCTCAGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
290 GTAGTCCAGACTTCTTGCCCTTGAGCACTGCTGTCTCTTCAAACTCCTTTTATTTATTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
291 TGTTCTCATGCTAGAGCCCAGGTTCTCCATCTGTATCCTCCTAGTAGCTCCTTCCCTCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
292 GGGAAGGATCAGGCAACCTCTGGTATCCTAGATGCTCAATGCCTAGAACCTGCCAGGACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
293 TCAATTCTGGGATATTCCCTACAGACATTTTGACAGGCTTTGAGGTTCTACATCCTGGTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
294 CCAGGCTCCCAACCCCCAGTTGAGTAGGGACCTCTCCACTCTACAGGCCAAGCCTAGCTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
295 TATTAAACTCATAGTTTTTAGGAGCTTCAGACCATTTGCTTTTGTGCTGCTAGTCCCGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
296 AAGGCATGAGAAATTGTTACCAGACAGCACCTTGCTGGGTTTCACTCCTTGAAGAAAGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
297 TAGGAGCATCATTGCTCTCAATCTTACCCCACCCCTTCAGACATAGCCTTGAATGTACAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
298 ACACCTAGGGGCATCCACTCTAGTCTTCTAAATCATTTATTTTTCCATATTTATATTTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
299 AAATAAATAAGGATATATTCAATTGTAAACTCTTTCTGGCCAAAGAGTGAACCTTGGAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
300 AAGTCTGCATGCATCTTGGGGCCTCAGGACACCCCAGGGTTTTAAAAGGACATAGAAGTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
301 AAAGGCCAAACATTTGGTCTCAGCTGTCACCTGCTACTCAGTCCCATCCCAGGTCTTTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
302 GCTAGGTACTGTCCCTGCTCACAGCCAGAAGCAGCAATAGCTGGAAAAAGTGACGACTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
303 GGACTCCAGTGAACCATAATAAACCAACGAATAAGGTGAAACTCAACAGCATCAGCTTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
304 CCAATATGGAAAGTCACCTGCTTCAATAAACCACTGTGAACTGCAAATTCTACTGGGAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
305 ACAGCCTTTTCTCTCCCAGACAGGCTGCCCTGGACTTCATAATCCTGCCTCAACTATTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
306 TGGCTTGAATAAGGTTTGATGTGGTAAGAGTTCCAGACAGGTTTCTCTGTAGCCCCGGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
307 GTCCTGGAACTCTCTGTAGACCAGGCTGGTCTCGAACTTGGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
308 >comp41_c1_seq1 len=412 path=[41169:0-411]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
309 AGTGAGGCCAGGACGAGACAAGTAAGCTTTGGGGGCTCCTGCCAGTTCTTGGATAGGGTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
310 ACTTTTGGGGGATGGATGGCAGGCTTAGGCGAGGCCTAATGTTCCACGCAGCCCCTAGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
311 TATTATGAATCTGCGTCCATCTGAGCCTCAGTCCCAGCTGCTTCTTAGGGCATAACTCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
312 AGGTTACTAATCTTTGTGGTTGCATGAAGAAACGGCTTGTTCTGTGACCTGCTGCTCTAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
313 GGTTGAGCAAGCTCCTGGAGGCATCAGCATCACCTTCTTTTGGCACAACAGGGTTGTGGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
314 TGGGGCTAGAGCAACCTAGATGGGACGAAGAACCCTAACCTCTGGGCAGTGGCCCATTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
315 CTATGGGGCTCAGCAGGTGTGCAGCTGAGTGAAGTTGAGGCCAGCTCTTTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
316 >comp42_c0_seq1 len=246 path=[42940:0-158 43099:159-245]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
317 CTCTTGCCTACTTGACCCAATGCAGCATAGGCATTCGAGTTTTGAGTTGTTCCCTGGAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
318 TTCAGGTCTACAGTCACAGCTGAGAAGCACAATACTGAGCGGATGGTAGCCAGCAAAGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
319 ATCAGAAGGAGAGCAGAGAGCAAATAGATTCTCTAGACTGGTCATAGAGCAGTTTCTTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
320 GAAAAGTGGGCGGTTAGCACTGGCTGTTGTCCTCACTATTTCCAGAGCATCAGTCTTACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
321 TCTGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
322 >comp43_c0_seq1 len=304 path=[43486:0-303]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
323 GGTTTTTGTTGTTGTGTTTGGTTTTGTTTTTAATCAAAGGGCAAGCAAGCAAAGTTTATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
324 TAAATTTTTATTTTATGTGTATGGGTATTTTGCTGCATATATGGCTGTCTACTATTTGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
325 TACCTAGTGTCTACAGAGACCAGAAGAAGACATCAAGTCCCCTGAAACTGGAGTTACAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
326 TGGTTATGAGTCATTATGTGGGTGCTGGGAATTGAACCCAGGTGATCTGGAGGAGGAGTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
327 ATTTTTTTTGTTTTGTTTTTCATATATGTCATACAAAGTCTATTGAGAAGTAAATAAATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
328 TTCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
329 >comp44_c0_seq1 len=7076 path=[51596:0-5597 57312:5598-6592 58307:6593-6594 58309:6595-7075]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
330 CGGGCCGCCGGGGCGGGGTGCCGCCGCCGCCGGGCCGTAGGGACGAGTGAGGCGGGCGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
331 CGGGAAGCGACCCCCGGGCCGACGGCGCCGAGGCCGGACGGGCGCGGCCCTCGAACGGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
332 GCCCCTCGAGCGTGGCGAGGCTTTCGACGCCCTTGGCGGCCCCGCGGCCGCTCCGCGTCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
333 CCGGCCGCTTCCTGGTGCCGCCGCTGCCCTCCACGCCTCCTCGCCCCCACCGCCACCTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
334 TCGCCTTTCTCCCTCCCCGTCCTCATCCCGGTCCCCGTCCCCCTCCTCCGCCTTCCCTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
335 AGCCGCCGGGACCGCCGCCGCCGCCGCCTCCTCCGCGTCCATGTATGAGGGCAAGAAGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
336 GAAGAACATGTTCCTGACCCGGGCCCTGGAGAAGATTCTGGCCGACAAGGAAGTGAAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
337 GGCGCATCACTCCCAGCTGCGCAAAGCGTGCGAGGTGGCCCTAGAGGAAATAAAAGTTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
338 AACTGAGAAACAAAGCCCTCCTCATGGAGAAGCAAAAGCTGGATCAGGCACCCTTCCACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
339 AGTGAAATCAAAGACAAATTTTATTGAAGCAGACAAGTACTTTTTACCCTTTGAGTTGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
340 ATGCCAGTCCAAATGTCCCCGCATAGTTAGTACATCTCTAGATTGTTTGCAGAAACTTAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
341 TGCTTATGGGCACTTGACTGGCAGGGCTCCAGATAGTACGACACCAGGCAAAAAATTAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
342 TGATAGAATTATTGAAACAATATGTGGCTGCTTCCAAGGTCCTCAAACAGATGAAGGAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
343 TCAGTTGCAGATAATAAAGGCTTTACTTACCGCAGTGACATCACAACACATAGAAATCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
344 TGAAGGAACTGTGCTGCAAGCTGTGAGGACATGCTACAATATCTATTTAGCCAGCAAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
345 TCTCATCAATCAGACAACAGCCAAAGCTACTCTTACTCAAATGCTGAACGTTATCTTTGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
346 ACGCATGGAAAACCAAGCATTACAGGAGGCCAAACAAATGGAAAGAGAAAGACATCGGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
347 GCAGCAGCATTTGTTACAGTCTCCAGTAAGCCATCATGAGCCCGAGTCACCTCATCTTAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
348 ATATTTGCCACCTCAGACTGTTGATCATATAAACCAAGAGCATGAAGGGGATCTTGAGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
349 CCAAACACATGATGTGGATAAAAGTCTCCAAGATGATACAGAGCCTGAAAACGGATCTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
350 TATTTCCAGTGCAGAAAATGAACAGACAGAAGCTGATCAGGCAACTGCAGCTGAAACATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
351 ATCTAAAAATGATATCTTGTATGATGGAGACTATGAAGAAAAGCCACTTGATATTGTCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
352 GAGCATTGTAGAAGAAATGGTGAACATCATTGTTGGAGACATGGGAGAAGGGATGGCTAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
353 CAGTGCAAGTACAGAAGGCAACACTGGAACTGTAGAAGATGGTAGTGACAGTGAAAACAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
354 CCAAGCAAATGGAATCCCAGGAACACCCATTTCTGTTGCATATACACCATCGTTACCTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
355 CGACAGGTTATCTGTCTCCTCCAATGATACTCAGGAATCTGGAAATTCTTCAGGACCTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
356 ACCTGGTGCTAAGTTTTCCCACATTTTACAAAAGGATGCCTTTCTAGTGTTCAGGTCATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
357 GTGTAAGCTGTCAATGAAACCACTGTCAGATGGACCACCAGATCCAAAGTCTCATGAGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
358 ACGGTCCAAGATTCTTTCATTGCAGTTGCTTCTGTCCATTCTGCAGAATGCAGGACCTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
359 TTTCAGGACAAATGAGATGTTTATTAATGCTATCAAGCAGTATCTATGTGTTGCACTCTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
360 AAAAAACGGAGTCTCATCTGTTCCAGAGGTTTTTGAGCTTTCTCTTTCCATATTTCTTAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
361 TTTGTTGTCAAACTTCAAGACACATCTGAAGATGCAAATTGAGGTATTCTTTAAAGAAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
362 CTTCCTGTACATTTTGGAAACGTCTACAAGCTCATTTGACCATAAGTGGATGGTTATTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
363 GACACTGACAAGGATCTGTGCAGATGCTCAGAGTGTGGTGGACATTTATGTAAATTATGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
364 CTGTGACCTAAATGCAGCAAATATATTTGAAAGACTAGTAAATGACCTGTCGAAAATTGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
365 CCAAGGAAGGGGCAGCCAAGAACTTGGTATGAGTAATGTTCAGGAATTGAGCCTGCGAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
366 AAAGGGGTTAGAATGTTTAGTTTCAATTTTGAAATGTATGGTTGAATGGAGCAAGGATCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
367 GTATGTGAACCCCAACTCTCAAACTACCCTTGGTCAGGAAAAACCCTCAGAGCAAGAGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
368 AAGTGAAGTTAAACACCCAGAGACTATAAACAGATATGGAAGTTTAAACTCCTTAGAATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
369 CACATCATCATCAGGAATTGGCAGCTACAGTACACAGATGTCTGGCACTGATAATCCAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
370 ACAATTTGAGGTCCTAAAGCAGCAAAAAGAAATAATAGAACAAGGGATTGATTTATTTAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
371 TAAGAAACCAAAGAGAGGAATACAATACCTCCAAGAACAAGGGATGCTTGGCACCACACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
372 CGAAGATATAGCTCAGTTCTTACATCAAGAAGAAAGATTAGACTCTACTCAGGTGGGTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
373 GTTCCTGGGAGATAATGATAAATTCAATAAAGAAGTCATGTATGCATATGTAGACCAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
374 TGACTTTTCAGGAAAAGACTTTGTTTCAGCTCTTCGTCTATTTCTGGAAGGATTCCGGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
375 TCCAGGAGAAGCTCAGAAAATTGATCGATTAATGGAAAAATTTGCTGCAAGATACCTAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
376 GTGCAACCAAGGACAAACCCTTTTTGCTAGTGCAGATACTGCTTATGTTTTGGCCTACTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
377 AATTATCATGTTGACTACAGACCTTCACAGTCCACAGGTTAAAAACAAAATGACAAAAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
378 ACAGTACATTAAAATGAATCGTGGTATCAATGACAGTAAAGATCTCCCTGAAGAGTATCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
379 ATCAGCCATTTATAACGAAATAGCTGGGAAAAAAATATCAATGAAAGAAACAAAAGAACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
380 AACAATCCCTACAAAGTCAACTAAACAGAATGTAGCCAGTGAAAAGCAAAGACGACTTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
381 GTATAACTTAGAAATGGAACAGATGGCCAAGACGGCTAAAGCACTCATGGAAGCTGTGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
382 CCATGTTCAGGCACCTTTTACAAGTGCAACACACTTGGAGCACGTGAGGCCGATGTTTAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
383 GTTGGCTTGGACACCTTTTCTGGCTGCATTCAGTGTGGGTCTCCAAGACTGTGATGATAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
384 TGAAGTAGCCTCTCTTTGCCTAGAAGGGATAAGATGTGCTATCAGGATTGCATGCATTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
385 CAGCATTCAGCTGGAAAGAGATGCATATGTCCAAGCACTAGCCAGATTTACCTTACTTAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
386 AGTGAGTTCTGGTATTACTGAAATGAAACAGAAGAATATCGACACAATAAAAACACTCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
387 CACGGTGGCTCACACTGATGGAAATTATTTAGGAAATTCGTGGCATGAGATCCTGAAGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
388 CATCAGTCAGTTAGAGCTGGCACAACTTATAGGAACTGGAGTGAAGCCTCGGTACATTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
389 TGGGACTGTGAGAGGCAGAGAAGGGTCTCTCACTGGGACAAAAGATCAGGCTCCAGATGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
390 ATTTGTTGGTCTAGGGCTAGTTGGAGGAAATGTGGACTGGAAGCAGATAGCCAGTATTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
391 GGAGTCTATTGGAGAAACCAGCTCTCAAAGTGTGGTAGTTGCTGTGGATAGAATATTCAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
392 CGGATCCACAAGGCTAGATGGAAATGCTATTGTTGATTTTGTCCGTTGGCTATGTGCTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
393 GTCTATGGATGAATTGCTTTCTACTACACACCCAAGAATGTTTAGTCTACAAAAAATAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
394 AGAAATATCATACTATAACATGGGAAGAATAAGACTGCAGTGGTCTCGGATTTGGGAAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
395 TATTGGAGATCATTTTAATAAGGTTGGTTGCAATCCTAATGAAGATGTAGCCATATTTGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
396 AGTAGACTCTCTGAGGCAGCTATCAATGAAGTTTTTAGAGAAAGGAGAGCTTGCAAACTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
397 CAGATTCCAAAAGGATTTCTTACGACCTTTTGAACATATAATGAAACGAAACAGGTCTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
398 AACAATTCGAGATATGGTTGTACGGTGTATAGCACAAATGGTTAATTCTCAGGCTGCAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
399 TATTCGTTCAGGATGGAAGAACATTTTCTCAGTATTCCATCTAGCTGCATCAGACCAAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
400 TGAAAGCATAGTAGAACTTGCATTTCAGACAACAGGGCACATTGTCACTCTTGTATTTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
401 AAAACACTTTCCGGCCACCATTGATTCTTTCCAGGATGCAGTGAAGTGTTTGTCTGAATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
402 CGCATGTAATGCAGCTTTCCCAGACACAAGTATGGAAGCAATCCGACTTATTCGCCATTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
403 TGCAAAATATGTGTCTGATAGACCGCAGGCTTTCAAGGAGTACACAAGTGATGACATGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
404 CGTGGCACCTGAAGACAGGGTGTGGGTGAGAGGGTGGTTCCCGATCCTCTTTGAGTTGTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
405 TTGTATCATCAATAGATGCAAATTAGATGTAAGAACCAGGGGCTTAACAGTAATGTTTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
406 AATAATGAAAACATATGGCCACACTTATGAAAAACATTGGTGGCAGGACTTATTCAGAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
407 TGTTTTCAGAATCTTTGACAACATGAAATTGCCAGAACAGCAGACAGAGAAAGCTGAATG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
408 GATGACAACAACTTGTAACCATGCCCTTTATGCAATATGTGATGTATTCACCCAGTATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
409 AGAAGTTCTCAGCGATGTACTTTTGGATGATATTTTTGCCCAGCTTTACTGGTGTGTACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
410 ACAAGACAATGAGCAGTTAGCACGATCTGGTACAAACTGCTTAGAAAACGTGGTTATTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
411 GAATGGTGAAAAGTTTACTCTTGAAATCTGGGATAAAACGTGTAACTGCACCCTGGATAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
412 CTTCAAAACCACAATTCCTCACGCGCTTCTGACTTGGCGTCCCACCTCTGGCGAGGCCGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
413 ACCCCCATCTCCATCAGCTGTGAGTGAAAAGCCGTTGGATGCAATATCACAAAAATCTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
414 AGACATACATGATTCTATTCAACCAAGATCTTCAGATAACAGACAGCAAGCACCACTGGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
415 TTCTGTTTCTACTGTGAGTGAAGAAGTTAGCAAAGTGAAATCCACAGCAAAATTCCCAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
416 ACAAAAATTGTTTGCTGCCCTGTTGATTAAATGTGTTGTGCAGCTGGAACTCATCCAGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
417 CATCGACAACATTGTCTTCTTCCCAGCCACAAGCAAGAAGGAGGATGCAGAGAACTTAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
418 TGCAGCCCAGAGAGATGCAGTAGACTTCGATGTTCGAGTTGATACTCAAGACCAAGGAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
419 GTACCGCTTTTTAACATCACAACAACTGTTCAAGCTACTGGACTGCTTATTAGAGTCGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
420 TAGATTTGCAAAAGCATTTAATTCCAACAATGAACAGAGGACTGCTCTGTGGAAAGCAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
421 CTTCAAAGGCAAGTCCAAGCCCAATCTTCTAAAACAGGAGACAAGCAGCCTGGCGTGTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
422 GCTGCGCATTCTCTTCCGGATGTACATGGACGAGAGCAGAGTCAGTGCCTGGGAAGAAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
423 CCAGCAGAGGCTTTTAAATTTAAAGCTCACGCATCATTCTACTACCCTCTCTTATGTGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
424 ATTATGCAATTTGACTTGATTCCGGAACTGCGTGCTGTTCTTAGAAGATTTTTCCTGCGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
425 ATTGGAATAGTATTTCAAATATCACAACCACCTGAACAGGAACTTGGGATAAACAGGCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
426 TGATGAGAGCCGATGTTTTTCTGTTGGTGTTTACATTGCTCTGCTCTGTGAAAGGATCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
427 GCAGCAGAGGCTTCCTACCTGAAAAATGTTTCTCTCAATTGTAGTGTGTGAGTTACTGGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
428 AAGACGCTTACACCTATAACTCAAGGTCGGAATAGTCCCTCCAGTCCCTTTAGTAACCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
429 GTGGCCTCTGTCTCGTGTTGGGCTCATGTTGAGCAGAAAGGCTGTTCCCACAGCATCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
430 CTACCTTTAGGGTCCTTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTACG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
431 GAAATTACCCAAAGAAGTATAGATGTAAAGACTGAGCTTCTGCGAGAAGTACAACTCAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
432 AGAGCTGTATTTTGAAGGATAAAATGTTTATAATTGGGGGTGGGGGAAGGGAGAAAAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
433 TTATTGCTCATGGTAAAAGATATTTAGCAACTATGGTATTCTTACTCTGAAGATTTTTGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
434 ACACTCAGGCTATCTGAGACACCGGAAATCATCATCTTTCTGTGAAAATGTACAGAGATG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
435 CAGGTCTGTAATATAAAAATCTTAAACATATTGTTCCTCCTGCACTGTTTTATTTCTTTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
436 TTTTCTTATCTACTTGCTAAATACCCATAATATTTTGTCAAATGCACTAAAACATTTGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
437 TTGAACTTTTAGTCTTTGGGGGAGTGGTGGTCATTTTGAGGGCTTGCTGTGCCCTGAATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
438 TGTTGTGGCTGATGCCTGTCAAGATGACAACAGGAGGGGATCCACCAAGGTAGAAAACAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
439 CCCTGCTGACAAGACCTACCTGTGACATACTCACTCTCTTAGGGCTTTTAAAGACAAGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
440 ATTAAAATAGATGACCTTTCACAGACTGAAACTTGAATCACTGCAAAATGAATCTAGGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
441 GCTGTCACTTTTTCTTTTGGGTGGCGGGGCTTGATGTAGATTTTATTCTATGTACAGAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
442 TTAATGTTGAATATATTAAAAATAACAAACCTGGCATGGTTTTGGGAGGTTAGATTTACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
443 GGAAATGTATTCATACTGTGAACTGTGCTCTGATGGTTAGAATGAAAAGCTTATCAAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
444 TTCCATATAACAGTGGATGTAGAAAATGTTTTCAGGTGGATATGTATATGGTACAGATGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
445 AAAGTTTTCTATGTAAAAAATTCTGTACAACTTTCTGTACAATATTGATTCTCATCTGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
446 ATATCTAATCAGGTTATAGGTCAATAAAGTTTTTGAATTATTTCATCAGTGCAGTGTAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
447 CCACAGCCCTGTTTTCATTGTTTTTTGTTTGTTTTAATTAAAGGTCAAACCATGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
448 >comp44_c0_seq2 len=7194 path=[51596:0-5597 57194:5598-5715 57312:5716-6710 58307:6711-6712 58309:6713-7193]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
449 CGGGCCGCCGGGGCGGGGTGCCGCCGCCGCCGGGCCGTAGGGACGAGTGAGGCGGGCGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
450 CGGGAAGCGACCCCCGGGCCGACGGCGCCGAGGCCGGACGGGCGCGGCCCTCGAACGGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
451 GCCCCTCGAGCGTGGCGAGGCTTTCGACGCCCTTGGCGGCCCCGCGGCCGCTCCGCGTCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
452 CCGGCCGCTTCCTGGTGCCGCCGCTGCCCTCCACGCCTCCTCGCCCCCACCGCCACCTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
453 TCGCCTTTCTCCCTCCCCGTCCTCATCCCGGTCCCCGTCCCCCTCCTCCGCCTTCCCTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
454 AGCCGCCGGGACCGCCGCCGCCGCCGCCTCCTCCGCGTCCATGTATGAGGGCAAGAAGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
455 GAAGAACATGTTCCTGACCCGGGCCCTGGAGAAGATTCTGGCCGACAAGGAAGTGAAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
456 GGCGCATCACTCCCAGCTGCGCAAAGCGTGCGAGGTGGCCCTAGAGGAAATAAAAGTTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
457 AACTGAGAAACAAAGCCCTCCTCATGGAGAAGCAAAAGCTGGATCAGGCACCCTTCCACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
458 AGTGAAATCAAAGACAAATTTTATTGAAGCAGACAAGTACTTTTTACCCTTTGAGTTGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
459 ATGCCAGTCCAAATGTCCCCGCATAGTTAGTACATCTCTAGATTGTTTGCAGAAACTTAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
460 TGCTTATGGGCACTTGACTGGCAGGGCTCCAGATAGTACGACACCAGGCAAAAAATTAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
461 TGATAGAATTATTGAAACAATATGTGGCTGCTTCCAAGGTCCTCAAACAGATGAAGGAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
462 TCAGTTGCAGATAATAAAGGCTTTACTTACCGCAGTGACATCACAACACATAGAAATCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
463 TGAAGGAACTGTGCTGCAAGCTGTGAGGACATGCTACAATATCTATTTAGCCAGCAAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
464 TCTCATCAATCAGACAACAGCCAAAGCTACTCTTACTCAAATGCTGAACGTTATCTTTGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
465 ACGCATGGAAAACCAAGCATTACAGGAGGCCAAACAAATGGAAAGAGAAAGACATCGGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
466 GCAGCAGCATTTGTTACAGTCTCCAGTAAGCCATCATGAGCCCGAGTCACCTCATCTTAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
467 ATATTTGCCACCTCAGACTGTTGATCATATAAACCAAGAGCATGAAGGGGATCTTGAGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
468 CCAAACACATGATGTGGATAAAAGTCTCCAAGATGATACAGAGCCTGAAAACGGATCTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
469 TATTTCCAGTGCAGAAAATGAACAGACAGAAGCTGATCAGGCAACTGCAGCTGAAACATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
470 ATCTAAAAATGATATCTTGTATGATGGAGACTATGAAGAAAAGCCACTTGATATTGTCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
471 GAGCATTGTAGAAGAAATGGTGAACATCATTGTTGGAGACATGGGAGAAGGGATGGCTAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
472 CAGTGCAAGTACAGAAGGCAACACTGGAACTGTAGAAGATGGTAGTGACAGTGAAAACAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
473 CCAAGCAAATGGAATCCCAGGAACACCCATTTCTGTTGCATATACACCATCGTTACCTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
474 CGACAGGTTATCTGTCTCCTCCAATGATACTCAGGAATCTGGAAATTCTTCAGGACCTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
475 ACCTGGTGCTAAGTTTTCCCACATTTTACAAAAGGATGCCTTTCTAGTGTTCAGGTCATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
476 GTGTAAGCTGTCAATGAAACCACTGTCAGATGGACCACCAGATCCAAAGTCTCATGAGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
477 ACGGTCCAAGATTCTTTCATTGCAGTTGCTTCTGTCCATTCTGCAGAATGCAGGACCTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
478 TTTCAGGACAAATGAGATGTTTATTAATGCTATCAAGCAGTATCTATGTGTTGCACTCTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
479 AAAAAACGGAGTCTCATCTGTTCCAGAGGTTTTTGAGCTTTCTCTTTCCATATTTCTTAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
480 TTTGTTGTCAAACTTCAAGACACATCTGAAGATGCAAATTGAGGTATTCTTTAAAGAAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
481 CTTCCTGTACATTTTGGAAACGTCTACAAGCTCATTTGACCATAAGTGGATGGTTATTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
482 GACACTGACAAGGATCTGTGCAGATGCTCAGAGTGTGGTGGACATTTATGTAAATTATGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
483 CTGTGACCTAAATGCAGCAAATATATTTGAAAGACTAGTAAATGACCTGTCGAAAATTGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
484 CCAAGGAAGGGGCAGCCAAGAACTTGGTATGAGTAATGTTCAGGAATTGAGCCTGCGAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
485 AAAGGGGTTAGAATGTTTAGTTTCAATTTTGAAATGTATGGTTGAATGGAGCAAGGATCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
486 GTATGTGAACCCCAACTCTCAAACTACCCTTGGTCAGGAAAAACCCTCAGAGCAAGAGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
487 AAGTGAAGTTAAACACCCAGAGACTATAAACAGATATGGAAGTTTAAACTCCTTAGAATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
488 CACATCATCATCAGGAATTGGCAGCTACAGTACACAGATGTCTGGCACTGATAATCCAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
489 ACAATTTGAGGTCCTAAAGCAGCAAAAAGAAATAATAGAACAAGGGATTGATTTATTTAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
490 TAAGAAACCAAAGAGAGGAATACAATACCTCCAAGAACAAGGGATGCTTGGCACCACACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
491 CGAAGATATAGCTCAGTTCTTACATCAAGAAGAAAGATTAGACTCTACTCAGGTGGGTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
492 GTTCCTGGGAGATAATGATAAATTCAATAAAGAAGTCATGTATGCATATGTAGACCAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
493 TGACTTTTCAGGAAAAGACTTTGTTTCAGCTCTTCGTCTATTTCTGGAAGGATTCCGGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
494 TCCAGGAGAAGCTCAGAAAATTGATCGATTAATGGAAAAATTTGCTGCAAGATACCTAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
495 GTGCAACCAAGGACAAACCCTTTTTGCTAGTGCAGATACTGCTTATGTTTTGGCCTACTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
496 AATTATCATGTTGACTACAGACCTTCACAGTCCACAGGTTAAAAACAAAATGACAAAAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
497 ACAGTACATTAAAATGAATCGTGGTATCAATGACAGTAAAGATCTCCCTGAAGAGTATCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
498 ATCAGCCATTTATAACGAAATAGCTGGGAAAAAAATATCAATGAAAGAAACAAAAGAACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
499 AACAATCCCTACAAAGTCAACTAAACAGAATGTAGCCAGTGAAAAGCAAAGACGACTTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
500 GTATAACTTAGAAATGGAACAGATGGCCAAGACGGCTAAAGCACTCATGGAAGCTGTGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
501 CCATGTTCAGGCACCTTTTACAAGTGCAACACACTTGGAGCACGTGAGGCCGATGTTTAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
502 GTTGGCTTGGACACCTTTTCTGGCTGCATTCAGTGTGGGTCTCCAAGACTGTGATGATAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
503 TGAAGTAGCCTCTCTTTGCCTAGAAGGGATAAGATGTGCTATCAGGATTGCATGCATTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
504 CAGCATTCAGCTGGAAAGAGATGCATATGTCCAAGCACTAGCCAGATTTACCTTACTTAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
505 AGTGAGTTCTGGTATTACTGAAATGAAACAGAAGAATATCGACACAATAAAAACACTCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
506 CACGGTGGCTCACACTGATGGAAATTATTTAGGAAATTCGTGGCATGAGATCCTGAAGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
507 CATCAGTCAGTTAGAGCTGGCACAACTTATAGGAACTGGAGTGAAGCCTCGGTACATTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
508 TGGGACTGTGAGAGGCAGAGAAGGGTCTCTCACTGGGACAAAAGATCAGGCTCCAGATGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
509 ATTTGTTGGTCTAGGGCTAGTTGGAGGAAATGTGGACTGGAAGCAGATAGCCAGTATTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
510 GGAGTCTATTGGAGAAACCAGCTCTCAAAGTGTGGTAGTTGCTGTGGATAGAATATTCAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
511 CGGATCCACAAGGCTAGATGGAAATGCTATTGTTGATTTTGTCCGTTGGCTATGTGCTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
512 GTCTATGGATGAATTGCTTTCTACTACACACCCAAGAATGTTTAGTCTACAAAAAATAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
513 AGAAATATCATACTATAACATGGGAAGAATAAGACTGCAGTGGTCTCGGATTTGGGAAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
514 TATTGGAGATCATTTTAATAAGGTTGGTTGCAATCCTAATGAAGATGTAGCCATATTTGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
515 AGTAGACTCTCTGAGGCAGCTATCAATGAAGTTTTTAGAGAAAGGAGAGCTTGCAAACTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
516 CAGATTCCAAAAGGATTTCTTACGACCTTTTGAACATATAATGAAACGAAACAGGTCTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
517 AACAATTCGAGATATGGTTGTACGGTGTATAGCACAAATGGTTAATTCTCAGGCTGCAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
518 TATTCGTTCAGGATGGAAGAACATTTTCTCAGTATTCCATCTAGCTGCATCAGACCAAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
519 TGAAAGCATAGTAGAACTTGCATTTCAGACAACAGGGCACATTGTCACTCTTGTATTTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
520 AAAACACTTTCCGGCCACCATTGATTCTTTCCAGGATGCAGTGAAGTGTTTGTCTGAATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
521 CGCATGTAATGCAGCTTTCCCAGACACAAGTATGGAAGCAATCCGACTTATTCGCCATTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
522 TGCAAAATATGTGTCTGATAGACCGCAGGCTTTCAAGGAGTACACAAGTGATGACATGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
523 CGTGGCACCTGAAGACAGGGTGTGGGTGAGAGGGTGGTTCCCGATCCTCTTTGAGTTGTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
524 TTGTATCATCAATAGATGCAAATTAGATGTAAGAACCAGGGGCTTAACAGTAATGTTTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
525 AATAATGAAAACATATGGCCACACTTATGAAAAACATTGGTGGCAGGACTTATTCAGAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
526 TGTTTTCAGAATCTTTGACAACATGAAATTGCCAGAACAGCAGACAGAGAAAGCTGAATG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
527 GATGACAACAACTTGTAACCATGCCCTTTATGCAATATGTGATGTATTCACCCAGTATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
528 AGAAGTTCTCAGCGATGTACTTTTGGATGATATTTTTGCCCAGCTTTACTGGTGTGTACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
529 ACAAGACAATGAGCAGTTAGCACGATCTGGTACAAACTGCTTAGAAAACGTGGTTATTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
530 GAATGGTGAAAAGTTTACTCTTGAAATCTGGGATAAAACGTGTAACTGCACCCTGGATAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
531 CTTCAAAACCACAATTCCTCACGCGCTTCTGACTTGGCGTCCCACCTCTGGCGAGGCCGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
532 ACCCCCATCTCCATCAGCTGTGAGTGAAAAGCCGTTGGATGCAATATCACAAAAATCTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
533 AGACATACATGATTCTATTCAACCAAGATCTTCAGATAACAGACAGCAAGCACCACTGGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
534 TTCTGTTTCTACTGTGAGTGAAGAAGTTAGCAAAGTGAAATCCACAGCAAAATTCCCAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
535 ACAAAAATTGTTTGCTGCCCTGTTGATTAAATGTGTTGTGCAGCTGGAACTCATCCAGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
536 CATCGACAACATTGTCTTCTTCCCAGCCACAAGCAAGAAGGAGGATGCAGAGAACTTAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
537 TGCAGCCCAGAGAGATGCAGTAGACTTCGATGTTCGAGTTGATACTCAAGACCAAGGAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
538 GTACCGCTTTTTAACATCACAACAACTGTTCAAGCTACTGGACTGCTTATTAGAGTCGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
539 TAGATTTGCAAAAGCATTTAATTCCAACAATGAACAGAGGACTGCTCTGTGGAAAGCAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
540 CTTCAAAGGCAAGTCCAAGCCCAATCTTCTAAAACAGGAGACAAGCAGCCTGGCGTGTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
541 GCTGCGCATTCTCTTCCGGATGTACATGGACGAGAGCAGAGTCAGTGCCTGGGAAGAAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
542 CCAGCAGAGGCTTTTAAACGTCTGCAGGGAAGCGCTGAGCTACTTCCTCACTCTAACATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
543 CGAAAGTCACCGGGAAGCCTGGACTAACTTACTGTTACTGTTCCTCACTAAAGTTCTGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
544 GATCAGTGACAGCAGGTTTAAAGCTCACGCATCATTCTACTACCCTCTCTTATGTGAAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
545 TATGCAATTTGACTTGATTCCGGAACTGCGTGCTGTTCTTAGAAGATTTTTCCTGCGAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
546 TGGAATAGTATTTCAAATATCACAACCACCTGAACAGGAACTTGGGATAAACAGGCAATG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
547 ATGAGAGCCGATGTTTTTCTGTTGGTGTTTACATTGCTCTGCTCTGTGAAAGGATCCTGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
548 AGCAGAGGCTTCCTACCTGAAAAATGTTTCTCTCAATTGTAGTGTGTGAGTTACTGGTAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
549 GACGCTTACACCTATAACTCAAGGTCGGAATAGTCCCTCCAGTCCCTTTAGTAACCCAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
550 GGCCTCTGTCTCGTGTTGGGCTCATGTTGAGCAGAAAGGCTGTTCCCACAGCATCAGCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
551 ACCTTTAGGGTCCTTCCCTGTCCTCTAAGCAGGGTGAGCCCACACTGTGGCAGGTACGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
552 AATTACCCAAAGAAGTATAGATGTAAAGACTGAGCTTCTGCGAGAAGTACAACTCAGGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
553 AGCTGTATTTTGAAGGATAAAATGTTTATAATTGGGGGTGGGGGAAGGGAGAAAAAAATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
554 ATTGCTCATGGTAAAAGATATTTAGCAACTATGGTATTCTTACTCTGAAGATTTTTGCAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
555 ACTCAGGCTATCTGAGACACCGGAAATCATCATCTTTCTGTGAAAATGTACAGAGATGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
556 GGTCTGTAATATAAAAATCTTAAACATATTGTTCCTCCTGCACTGTTTTATTTCTTTATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
557 TTCTTATCTACTTGCTAAATACCCATAATATTTTGTCAAATGCACTAAAACATTTGGGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
558 GAACTTTTAGTCTTTGGGGGAGTGGTGGTCATTTTGAGGGCTTGCTGTGCCCTGAATCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
559 TTGTGGCTGATGCCTGTCAAGATGACAACAGGAGGGGATCCACCAAGGTAGAAAACATCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
560 CTGCTGACAAGACCTACCTGTGACATACTCACTCTCTTAGGGCTTTTAAAGACAAGCCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
561 TAAAATAGATGACCTTTCACAGACTGAAACTTGAATCACTGCAAAATGAATCTAGGTTGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
562 TGTCACTTTTTCTTTTGGGTGGCGGGGCTTGATGTAGATTTTATTCTATGTACAGAATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
563 AATGTTGAATATATTAAAAATAACAAACCTGGCATGGTTTTGGGAGGTTAGATTTACTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
564 AAATGTATTCATACTGTGAACTGTGCTCTGATGGTTAGAATGAAAAGCTTATCAAGCATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
565 CCATATAACAGTGGATGTAGAAAATGTTTTCAGGTGGATATGTATATGGTACAGATGTAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
566 AGTTTTCTATGTAAAAAATTCTGTACAACTTTCTGTACAATATTGATTCTCATCTGGCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
567 ATCTAATCAGGTTATAGGTCAATAAAGTTTTTGAATTATTTCATCAGTGCAGTGTAACCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
568 ACAGCCCTGTTTTCATTGTTTTTTGTTTGTTTTAATTAAAGGTCAAACCATGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
569 >comp45_c0_seq1 len=432 path=[65399:0-431]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
570 TACAAGCCGGGCTCTTCATATCCCCTTTGCCAGTGAAAGCAGGTACTATGGCCAGCTAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
571 CAATCAAGTAGCCTAGGTTGTCACCATTGTGTGGCTCCTAGGTCCACTTGATACCGATCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
572 ATCATCCTCTTGGAAGATATTCATCTTAATAGGCAGGGGGTAAACTCTGAACACTGCTAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
573 CATCTTAGGAACTGTGGCAGATGTCAGAGGGCTGAGGGAGGCTGTCAGCAGACACTTCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
574 TCTTATCTGTCGTGCTGGGGGTGGGGCTGGAATGCATCTTCCACTTGCCCCGACATTTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
575 TGTAAACATGAGGGGTGTACATTCATGAGGCGTTCAGAGTGGAACATCCTAAGATGCAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
576 CGTGCGCGGGAGAGTTGACCTTTGTCTTGGACAAGCTTTCTCCTGACTGCTGTTTTTCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
577 ATTTCCTTGCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
578 >comp45_c1_seq1 len=2118 path=[64315:0-205 64521:206-423 59797:424-912 64852:913-981 60286:982-1525 60981:1526-2117]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
579 CTCGGCGGCGCCCGGGCTGTCCTCCTAAAATACTAGTACAAGAAGTATAAATGGCCCGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
580 AGAGTGCAGGGACCGGGCCCACGTGACCGCTCCACGAAGGCCACCGGCGGGGGCTCGGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
581 CGCAGGCCGCGCGCTTTCCCGCCGCATCCGGGCGCCGGGCGAGCTCCGGGGACGCCGGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
582 CCTGGCGGCGGCGGCGGCTCGAGCCGTGCCTCGGGCGGGTGAATCATCCCGGCCGACAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
583 GAGCGCCGCGGCGGCCCGTAGCAGCGCCGGAAGATGGCCGAGGCGGGCGCGGGCTTCCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
584 GAGCAGCTCAAGTCCTGCATCGTGTGGTCGTGGACCTATCTGTGGACCGTGTGGTTCTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
585 CTCGTGCTCTTCCTGGTCTACATCCTGAGGGTGCCCCTGAGGATCAACGACAACCTGAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
586 ACAGTGAGCATGTTTTTGAACACGTTAACCCCAAAGTTCTACGTGGCCCTGACAGGCACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
587 TCCTCGCTAATATCGGGACTTATTTTGATATTTGAATGGTGGTATTTTCGCAAGTATGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
588 ACATCTTTCATTGAACAAGTCTCCGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
589 AACAACTCTTCCAATAATTCTAATTCCAGTAATGGAGACTCAGATTCCAACAGACAAAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
590 GTCTCAGAATGCAAAGTATGGCGAAATCCACTGAATCTGTTTAGGGGTGCGGAATATAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
591 CGGTACACTTGGGTCACAGGACGAGAGCCTCTGACCTACTATGACATGAACCTCTCTGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
592 CAGGACCACCAGACATTCTTTACTTGTGATTCAGATCATCTTCGCCCTGCAGATGCAATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
593 ATGCAAAAAGCTTGGAGAGAAAGGAACCCTCAAGCCAGGATTTCTGCAGCTCATGAAGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
594 TTGGAGATAAACGAAATTAGGTCCAGAGTTGAAGTTCCCCTAATTGCTTCCTCTACCATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
595 TGGGAGATAAAATTGTTACCAAAGTGTGCAACTGCGTACATTCTCTTGGCGGAAGAAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
596 GCGACAACTATTGCTGAAGCAGAAAAACTCTTTAAGCAGGCCCTGAAGGCTGGAGATGGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
597 TGTTACCGGCGCTCTCAGCAGCTACAACATCATGGGTCCCAGTATGAAGCTCAACACAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
598 CGAGACACCAATGTCTTAGTCTATATCAAAAGAAGGCTGGCGATGTGTGCCCGGAGACTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
599 GGAAGGACCAGAGAAGCAGTGAAGATGATGAGAGATTTAATGAAGGAGTTTCCCCTCCTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
600 AGCATGTTCAATATCCATGAGAACCTTCTAGAAGCTCTTCTGGAACTCCAAGCTTATGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
601 GATGTTCAGGCAGTCTTAGCAAAGTATGATGATATAAGCTTACCAAAGTCGGCGACAATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
602 TGCTACACAGCCGCCCTGCTCAAAGCAAGAGCTGTCTCTGACAAATTCTCTCCAGAGGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
603 GCGTCTCGGAGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAAGCCATCCACAGAGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
604 GTGGAATTTAATCCACACGTGCCAAAACTTTCCGGATGATCCCGTATCCCCTGGAGAAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
605 GACACCTATTTTATCCATACCCAATCTGTACAGAAACAGCTGACCGGGAGCTGCTTCCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
606 CTTTCCATGAAGTCTCAGTTTACCCAAAGAAGGAACTTCCCTTCTTCATCCTCTTCACTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
607 CTGGACTGTGCTCCTTCACAGCCATGCTGGCCCTCCTGACACATCAGTTTCCGGAACTTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
608 TGGGAGTCTTCGCAAAAGCTTTCCTCAGCACTTTGTTTGCCCCCTTGAACTTTGTTATGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
609 AGAAAGTGGAAAGCATCCTCCCCTCCAGTTTGTGGCATCAGCTGACACGGATCTGAGGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
610 GCCTCCCATCCTTCACTTTCCACACCATCCACCATCTCTTCTGTGCCAACCTCTCATGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
611 CCGCAAGAAAGCATGACTTTGAAAAAGGGAAACCATTCTGAGATTTTAAACTGCTCATGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
612 ACTATCAGTTCCTTATTAAAGGCTGGTTTTGTTGTACAAAATTTATTGATGTTCAGTTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
613 ATTTTATTTTGCCTTCAAAACTGACTGATCAAAAAGTAAAAAAAATAAATAAATAAACTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
614 TTGTGTATTGCAAGAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
615 >comp45_c1_seq2 len=2282 path=[59209:0-587 59797:588-1076 64852:1077-1145 60286:1146-1689 60981:1690-2281]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
616 GAGCTCTTCAGGAGGGGGAATGTGCTTGTGGTTTTTGGTCTTGTGCATTTTGTGACAAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
617 GAATTCCCTTTTGAATCGCGCTGTTCCCTTGAAACCCTGGAGCCTCTGGTTCAAGCAGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
618 CAGTCAGTCTGTGCAGTGTCCCTGACGTCATCCGGCGTATGCATAAGCTCTGCTATTGTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
619 TTACCGCTAGAGCAGGGCTGAGGACTGCAGTCTCTGCTGCTGCTCGCAGACCTGCCCTGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
620 GCTAGCTACCTAGCCCTGCCTCACTGCATCCCTCAAGAGCCGCGGCAGCCTTTCCTTGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
621 TGCTGGATTTTGAGAAGCAGCTCTTCGATTTGGGCTGGTGTAGGAGCCCTGGCTTTCCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
622 TCTCGAGAGAAAGCTGAAGCGCTCAGAGGAGAATCTGGCAGCTGGACATAGCTCGGACTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
623 CATTGTCTGGCTTCATGACCCCTGCTGTGTAGCCGGCTCATCTCTTTGCTCTCAGGAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
624 CATGCACATCTTACATTTTCCTACTTCCTTTTTCTTTTTCTTTCCCTTCTTCTAATTTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
625 TTTTAAAGCACCTTCTGGAGCCAGCCATGTTTGGTACTGAATCTTCATTGAGCATGTTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
626 TGAACACGTTAACCCCAAAGTTCTACGTGGCCCTGACAGGCACTTCCTCGCTAATATCGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
627 GACTTATTTTGATATTTGAATGGTGGTATTTTCGCAAGTATGGAACATCTTTCATTGAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
628 AAGTCTCCGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGACAACAACTCTTCCAATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
629 ATTCTAATTCCAGTAATGGAGACTCAGATTCCAACAGACAAAGTGTCTCAGAATGCAAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
630 TATGGCGAAATCCACTGAATCTGTTTAGGGGTGCGGAATATAATCGGTACACTTGGGTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
631 CAGGACGAGAGCCTCTGACCTACTATGACATGAACCTCTCTGCCCAGGACCACCAGACAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
632 TCTTTACTTGTGATTCAGATCATCTTCGCCCTGCAGATGCAATAATGCAAAAAGCTTGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
633 GAGAAAGGAACCCTCAAGCCAGGATTTCTGCAGCTCATGAAGCCTTGGAGATAAACGAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
634 TTAGGTCCAGAGTTGAAGTTCCCCTAATTGCTTCCTCTACCATCTGGGAGATAAAATTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
635 TACCAAAGTGTGCAACTGCGTACATTCTCTTGGCGGAAGAAGAAGCGACAACTATTGCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
636 AAGCAGAAAAACTCTTTAAGCAGGCCCTGAAGGCTGGAGATGGTTGTTACCGGCGCTCTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
637 AGCAGCTACAACATCATGGGTCCCAGTATGAAGCTCAACACAGACGAGACACCAATGTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
638 TAGTCTATATCAAAAGAAGGCTGGCGATGTGTGCCCGGAGACTTGGAAGGACCAGAGAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
639 CAGTGAAGATGATGAGAGATTTAATGAAGGAGTTTCCCCTCCTAAGCATGTTCAATATCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
640 ATGAGAACCTTCTAGAAGCTCTTCTGGAACTCCAAGCTTATGCTGATGTTCAGGCAGTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
641 TAGCAAAGTATGATGATATAAGCTTACCAAAGTCGGCGACAATATGCTACACAGCCGCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
642 TGCTCAAAGCAAGAGCTGTCTCTGACAAATTCTCTCCAGAGGCTGCGTCTCGGAGGGGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
643 TGAGCACAGCAGAGATGAATGCAGTAGAAGCCATCCACAGAGCTGTGGAATTTAATCCAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
644 ACGTGCCAAAACTTTCCGGATGATCCCGTATCCCCTGGAGAAGGGACACCTATTTTATCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
645 ATACCCAATCTGTACAGAAACAGCTGACCGGGAGCTGCTTCCCTCTTTCCATGAAGTCTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
646 AGTTTACCCAAAGAAGGAACTTCCCTTCTTCATCCTCTTCACTGCTGGACTGTGCTCCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
647 CACAGCCATGCTGGCCCTCCTGACACATCAGTTTCCGGAACTTATGGGAGTCTTCGCAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
648 AGCTTTCCTCAGCACTTTGTTTGCCCCCTTGAACTTTGTTATGGAGAAAGTGGAAAGCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
649 CCTCCCCTCCAGTTTGTGGCATCAGCTGACACGGATCTGAGGGAGCCTCCCATCCTTCAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
650 TTTCCACACCATCCACCATCTCTTCTGTGCCAACCTCTCATGGACCGCAAGAAAGCATGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
651 CTTTGAAAAAGGGAAACCATTCTGAGATTTTAAACTGCTCATGGACTATCAGTTCCTTAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
652 TAAAGGCTGGTTTTGTTGTACAAAATTTATTGATGTTCAGTTCTATTTTATTTTGCCTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
653 AAAACTGACTGATCAAAAAGTAAAAAAAATAAATAAATAAACTTTTGTGTATTGCAAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
654 AA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
655 >comp45_c1_seq3 len=2433 path=[59209:0-587 59797:588-1076 64852:1077-1145 60286:1146-1689 60830:1690-1840 60981:1841-2432]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
656 GAGCTCTTCAGGAGGGGGAATGTGCTTGTGGTTTTTGGTCTTGTGCATTTTGTGACAAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
657 GAATTCCCTTTTGAATCGCGCTGTTCCCTTGAAACCCTGGAGCCTCTGGTTCAAGCAGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
658 CAGTCAGTCTGTGCAGTGTCCCTGACGTCATCCGGCGTATGCATAAGCTCTGCTATTGTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
659 TTACCGCTAGAGCAGGGCTGAGGACTGCAGTCTCTGCTGCTGCTCGCAGACCTGCCCTGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
660 GCTAGCTACCTAGCCCTGCCTCACTGCATCCCTCAAGAGCCGCGGCAGCCTTTCCTTGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
661 TGCTGGATTTTGAGAAGCAGCTCTTCGATTTGGGCTGGTGTAGGAGCCCTGGCTTTCCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
662 TCTCGAGAGAAAGCTGAAGCGCTCAGAGGAGAATCTGGCAGCTGGACATAGCTCGGACTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
663 CATTGTCTGGCTTCATGACCCCTGCTGTGTAGCCGGCTCATCTCTTTGCTCTCAGGAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
664 CATGCACATCTTACATTTTCCTACTTCCTTTTTCTTTTTCTTTCCCTTCTTCTAATTTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
665 TTTTAAAGCACCTTCTGGAGCCAGCCATGTTTGGTACTGAATCTTCATTGAGCATGTTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
666 TGAACACGTTAACCCCAAAGTTCTACGTGGCCCTGACAGGCACTTCCTCGCTAATATCGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
667 GACTTATTTTGATATTTGAATGGTGGTATTTTCGCAAGTATGGAACATCTTTCATTGAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
668 AAGTCTCCGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGACAACAACTCTTCCAATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
669 ATTCTAATTCCAGTAATGGAGACTCAGATTCCAACAGACAAAGTGTCTCAGAATGCAAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
670 TATGGCGAAATCCACTGAATCTGTTTAGGGGTGCGGAATATAATCGGTACACTTGGGTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
671 CAGGACGAGAGCCTCTGACCTACTATGACATGAACCTCTCTGCCCAGGACCACCAGACAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
672 TCTTTACTTGTGATTCAGATCATCTTCGCCCTGCAGATGCAATAATGCAAAAAGCTTGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
673 GAGAAAGGAACCCTCAAGCCAGGATTTCTGCAGCTCATGAAGCCTTGGAGATAAACGAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
674 TTAGGTCCAGAGTTGAAGTTCCCCTAATTGCTTCCTCTACCATCTGGGAGATAAAATTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
675 TACCAAAGTGTGCAACTGCGTACATTCTCTTGGCGGAAGAAGAAGCGACAACTATTGCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
676 AAGCAGAAAAACTCTTTAAGCAGGCCCTGAAGGCTGGAGATGGTTGTTACCGGCGCTCTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
677 AGCAGCTACAACATCATGGGTCCCAGTATGAAGCTCAACACAGACGAGACACCAATGTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
678 TAGTCTATATCAAAAGAAGGCTGGCGATGTGTGCCCGGAGACTTGGAAGGACCAGAGAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
679 CAGTGAAGATGATGAGAGATTTAATGAAGGAGTTTCCCCTCCTAAGCATGTTCAATATCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
680 ATGAGAACCTTCTAGAAGCTCTTCTGGAACTCCAAGCTTATGCTGATGTTCAGGCAGTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
681 TAGCAAAGTATGATGATATAAGCTTACCAAAGTCGGCGACAATATGCTACACAGCCGCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
682 TGCTCAAAGCAAGAGCTGTCTCTGACAAATTCTCTCCAGAGGCTGCGTCTCGGAGGGGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
683 TGAGCACAGCAGAGATGAATGCAGTAGAAGCCATCCACAGAGCTGTGGAATTTAATCCAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
684 ACGTGCCAAAATATCTACTAGAAATGAAAAGCTTAATCCTCCCACCAGAACACATCCTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
685 AGAGAGGAGACAGTGAAGCGATAGCATATGCATTCTTTCATCTTGCACACTGGAAGAGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
686 TGGAAGGGGCTTTGAATCTCTTGCATTGTACGTGGGAAGGCACTTTCCGGATGATCCCGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
687 ATCCCCTGGAGAAGGGACACCTATTTTATCCATACCCAATCTGTACAGAAACAGCTGACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
688 GGGAGCTGCTTCCCTCTTTCCATGAAGTCTCAGTTTACCCAAAGAAGGAACTTCCCTTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
689 TCATCCTCTTCACTGCTGGACTGTGCTCCTTCACAGCCATGCTGGCCCTCCTGACACATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
690 AGTTTCCGGAACTTATGGGAGTCTTCGCAAAAGCTTTCCTCAGCACTTTGTTTGCCCCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
691 TGAACTTTGTTATGGAGAAAGTGGAAAGCATCCTCCCCTCCAGTTTGTGGCATCAGCTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
692 CACGGATCTGAGGGAGCCTCCCATCCTTCACTTTCCACACCATCCACCATCTCTTCTGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
693 CCAACCTCTCATGGACCGCAAGAAAGCATGACTTTGAAAAAGGGAAACCATTCTGAGATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
694 TTAAACTGCTCATGGACTATCAGTTCCTTATTAAAGGCTGGTTTTGTTGTACAAAATTTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
695 TTGATGTTCAGTTCTATTTTATTTTGCCTTCAAAACTGACTGATCAAAAAGTAAAAAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
696 TAAATAAATAAACTTTTGTGTATTGCAAGAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
697 >comp45_c1_seq4 len=2049 path=[64315:0-205 64521:206-423 59797:424-912 60286:913-1456 60981:1457-2048]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
698 CTCGGCGGCGCCCGGGCTGTCCTCCTAAAATACTAGTACAAGAAGTATAAATGGCCCGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
699 AGAGTGCAGGGACCGGGCCCACGTGACCGCTCCACGAAGGCCACCGGCGGGGGCTCGGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
700 CGCAGGCCGCGCGCTTTCCCGCCGCATCCGGGCGCCGGGCGAGCTCCGGGGACGCCGGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
701 CCTGGCGGCGGCGGCGGCTCGAGCCGTGCCTCGGGCGGGTGAATCATCCCGGCCGACAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
702 GAGCGCCGCGGCGGCCCGTAGCAGCGCCGGAAGATGGCCGAGGCGGGCGCGGGCTTCCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
703 GAGCAGCTCAAGTCCTGCATCGTGTGGTCGTGGACCTATCTGTGGACCGTGTGGTTCTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
704 CTCGTGCTCTTCCTGGTCTACATCCTGAGGGTGCCCCTGAGGATCAACGACAACCTGAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
705 ACAGTGAGCATGTTTTTGAACACGTTAACCCCAAAGTTCTACGTGGCCCTGACAGGCACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
706 TCCTCGCTAATATCGGGACTTATTTTGATATTTGAATGGTGGTATTTTCGCAAGTATGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
707 ACATCTTTCATTGAACAAGTCTCCGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
708 AACAACTCTTCCAATAATTCTAATTCCAGTAATGGAGACTCAGATTCCAACAGACAAAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
709 GTCTCAGAATGCAAAGTATGGCGAAATCCACTGAATCTGTTTAGGGGTGCGGAATATAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
710 CGGTACACTTGGGTCACAGGACGAGAGCCTCTGACCTACTATGACATGAACCTCTCTGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
711 CAGGACCACCAGACATTCTTTACTTGTGATTCAGATCATCTTCGCCCTGCAGATGCAATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
712 ATGCAAAAAGCTTGGAGAGAAAGGAACCCTCAAGCCAGGATTTCTGCAGCTCATGAAGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
713 TTGGAGATAAACGAGTGTGCAACTGCGTACATTCTCTTGGCGGAAGAAGAAGCGACAACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
714 ATTGCTGAAGCAGAAAAACTCTTTAAGCAGGCCCTGAAGGCTGGAGATGGTTGTTACCGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
715 CGCTCTCAGCAGCTACAACATCATGGGTCCCAGTATGAAGCTCAACACAGACGAGACACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
716 AATGTCTTAGTCTATATCAAAAGAAGGCTGGCGATGTGTGCCCGGAGACTTGGAAGGACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
717 AGAGAAGCAGTGAAGATGATGAGAGATTTAATGAAGGAGTTTCCCCTCCTAAGCATGTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
718 AATATCCATGAGAACCTTCTAGAAGCTCTTCTGGAACTCCAAGCTTATGCTGATGTTCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
719 GCAGTCTTAGCAAAGTATGATGATATAAGCTTACCAAAGTCGGCGACAATATGCTACACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
720 GCCGCCCTGCTCAAAGCAAGAGCTGTCTCTGACAAATTCTCTCCAGAGGCTGCGTCTCGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
721 AGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAAGCCATCCACAGAGCTGTGGAATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
722 AATCCACACGTGCCAAAACTTTCCGGATGATCCCGTATCCCCTGGAGAAGGGACACCTAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
723 TTTATCCATACCCAATCTGTACAGAAACAGCTGACCGGGAGCTGCTTCCCTCTTTCCATG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
724 AAGTCTCAGTTTACCCAAAGAAGGAACTTCCCTTCTTCATCCTCTTCACTGCTGGACTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
725 GCTCCTTCACAGCCATGCTGGCCCTCCTGACACATCAGTTTCCGGAACTTATGGGAGTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
726 TCGCAAAAGCTTTCCTCAGCACTTTGTTTGCCCCCTTGAACTTTGTTATGGAGAAAGTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
727 AAAGCATCCTCCCCTCCAGTTTGTGGCATCAGCTGACACGGATCTGAGGGAGCCTCCCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
728 CCTTCACTTTCCACACCATCCACCATCTCTTCTGTGCCAACCTCTCATGGACCGCAAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
729 AGCATGACTTTGAAAAAGGGAAACCATTCTGAGATTTTAAACTGCTCATGGACTATCAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
730 TCCTTATTAAAGGCTGGTTTTGTTGTACAAAATTTATTGATGTTCAGTTCTATTTTATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
731 TGCCTTCAAAACTGACTGATCAAAAAGTAAAAAAAATAAATAAATAAACTTTTGTGTATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
732 GCAAGAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
733 >comp45_c1_seq5 len=2213 path=[59209:0-587 59797:588-1076 60286:1077-1620 60981:1621-2212]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
734 GAGCTCTTCAGGAGGGGGAATGTGCTTGTGGTTTTTGGTCTTGTGCATTTTGTGACAAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
735 GAATTCCCTTTTGAATCGCGCTGTTCCCTTGAAACCCTGGAGCCTCTGGTTCAAGCAGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
736 CAGTCAGTCTGTGCAGTGTCCCTGACGTCATCCGGCGTATGCATAAGCTCTGCTATTGTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
737 TTACCGCTAGAGCAGGGCTGAGGACTGCAGTCTCTGCTGCTGCTCGCAGACCTGCCCTGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
738 GCTAGCTACCTAGCCCTGCCTCACTGCATCCCTCAAGAGCCGCGGCAGCCTTTCCTTGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
739 TGCTGGATTTTGAGAAGCAGCTCTTCGATTTGGGCTGGTGTAGGAGCCCTGGCTTTCCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
740 TCTCGAGAGAAAGCTGAAGCGCTCAGAGGAGAATCTGGCAGCTGGACATAGCTCGGACTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
741 CATTGTCTGGCTTCATGACCCCTGCTGTGTAGCCGGCTCATCTCTTTGCTCTCAGGAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
742 CATGCACATCTTACATTTTCCTACTTCCTTTTTCTTTTTCTTTCCCTTCTTCTAATTTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
743 TTTTAAAGCACCTTCTGGAGCCAGCCATGTTTGGTACTGAATCTTCATTGAGCATGTTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
744 TGAACACGTTAACCCCAAAGTTCTACGTGGCCCTGACAGGCACTTCCTCGCTAATATCGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
745 GACTTATTTTGATATTTGAATGGTGGTATTTTCGCAAGTATGGAACATCTTTCATTGAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
746 AAGTCTCCGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGACAACAACTCTTCCAATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
747 ATTCTAATTCCAGTAATGGAGACTCAGATTCCAACAGACAAAGTGTCTCAGAATGCAAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
748 TATGGCGAAATCCACTGAATCTGTTTAGGGGTGCGGAATATAATCGGTACACTTGGGTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
749 CAGGACGAGAGCCTCTGACCTACTATGACATGAACCTCTCTGCCCAGGACCACCAGACAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
750 TCTTTACTTGTGATTCAGATCATCTTCGCCCTGCAGATGCAATAATGCAAAAAGCTTGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
751 GAGAAAGGAACCCTCAAGCCAGGATTTCTGCAGCTCATGAAGCCTTGGAGATAAACGAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
752 GTGCAACTGCGTACATTCTCTTGGCGGAAGAAGAAGCGACAACTATTGCTGAAGCAGAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
753 AACTCTTTAAGCAGGCCCTGAAGGCTGGAGATGGTTGTTACCGGCGCTCTCAGCAGCTAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
754 AACATCATGGGTCCCAGTATGAAGCTCAACACAGACGAGACACCAATGTCTTAGTCTATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
755 TCAAAAGAAGGCTGGCGATGTGTGCCCGGAGACTTGGAAGGACCAGAGAAGCAGTGAAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
756 TGATGAGAGATTTAATGAAGGAGTTTCCCCTCCTAAGCATGTTCAATATCCATGAGAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
757 TTCTAGAAGCTCTTCTGGAACTCCAAGCTTATGCTGATGTTCAGGCAGTCTTAGCAAAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
758 ATGATGATATAAGCTTACCAAAGTCGGCGACAATATGCTACACAGCCGCCCTGCTCAAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
759 CAAGAGCTGTCTCTGACAAATTCTCTCCAGAGGCTGCGTCTCGGAGGGGGCTGAGCACAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
760 CAGAGATGAATGCAGTAGAAGCCATCCACAGAGCTGTGGAATTTAATCCACACGTGCCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
761 AACTTTCCGGATGATCCCGTATCCCCTGGAGAAGGGACACCTATTTTATCCATACCCAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
762 CTGTACAGAAACAGCTGACCGGGAGCTGCTTCCCTCTTTCCATGAAGTCTCAGTTTACCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
763 AAAGAAGGAACTTCCCTTCTTCATCCTCTTCACTGCTGGACTGTGCTCCTTCACAGCCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
764 GCTGGCCCTCCTGACACATCAGTTTCCGGAACTTATGGGAGTCTTCGCAAAAGCTTTCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
765 CAGCACTTTGTTTGCCCCCTTGAACTTTGTTATGGAGAAAGTGGAAAGCATCCTCCCCTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
766 CAGTTTGTGGCATCAGCTGACACGGATCTGAGGGAGCCTCCCATCCTTCACTTTCCACAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
767 CATCCACCATCTCTTCTGTGCCAACCTCTCATGGACCGCAAGAAAGCATGACTTTGAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
768 AGGGAAACCATTCTGAGATTTTAAACTGCTCATGGACTATCAGTTCCTTATTAAAGGCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
769 GTTTTGTTGTACAAAATTTATTGATGTTCAGTTCTATTTTATTTTGCCTTCAAAACTGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
770 TGATCAAAAAGTAAAAAAAATAAATAAATAAACTTTTGTGTATTGCAAGAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
771 >comp45_c1_seq6 len=2269 path=[64315:0-205 64521:206-423 59797:424-912 64852:913-981 60286:982-1525 60830:1526-1676 60981:1677-2268]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
772 CTCGGCGGCGCCCGGGCTGTCCTCCTAAAATACTAGTACAAGAAGTATAAATGGCCCGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
773 AGAGTGCAGGGACCGGGCCCACGTGACCGCTCCACGAAGGCCACCGGCGGGGGCTCGGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
774 CGCAGGCCGCGCGCTTTCCCGCCGCATCCGGGCGCCGGGCGAGCTCCGGGGACGCCGGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
775 CCTGGCGGCGGCGGCGGCTCGAGCCGTGCCTCGGGCGGGTGAATCATCCCGGCCGACAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
776 GAGCGCCGCGGCGGCCCGTAGCAGCGCCGGAAGATGGCCGAGGCGGGCGCGGGCTTCCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
777 GAGCAGCTCAAGTCCTGCATCGTGTGGTCGTGGACCTATCTGTGGACCGTGTGGTTCTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
778 CTCGTGCTCTTCCTGGTCTACATCCTGAGGGTGCCCCTGAGGATCAACGACAACCTGAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
779 ACAGTGAGCATGTTTTTGAACACGTTAACCCCAAAGTTCTACGTGGCCCTGACAGGCACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
780 TCCTCGCTAATATCGGGACTTATTTTGATATTTGAATGGTGGTATTTTCGCAAGTATGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
781 ACATCTTTCATTGAACAAGTCTCCGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
782 AACAACTCTTCCAATAATTCTAATTCCAGTAATGGAGACTCAGATTCCAACAGACAAAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
783 GTCTCAGAATGCAAAGTATGGCGAAATCCACTGAATCTGTTTAGGGGTGCGGAATATAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
784 CGGTACACTTGGGTCACAGGACGAGAGCCTCTGACCTACTATGACATGAACCTCTCTGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
785 CAGGACCACCAGACATTCTTTACTTGTGATTCAGATCATCTTCGCCCTGCAGATGCAATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
786 ATGCAAAAAGCTTGGAGAGAAAGGAACCCTCAAGCCAGGATTTCTGCAGCTCATGAAGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
787 TTGGAGATAAACGAAATTAGGTCCAGAGTTGAAGTTCCCCTAATTGCTTCCTCTACCATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
788 TGGGAGATAAAATTGTTACCAAAGTGTGCAACTGCGTACATTCTCTTGGCGGAAGAAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
789 GCGACAACTATTGCTGAAGCAGAAAAACTCTTTAAGCAGGCCCTGAAGGCTGGAGATGGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
790 TGTTACCGGCGCTCTCAGCAGCTACAACATCATGGGTCCCAGTATGAAGCTCAACACAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
791 CGAGACACCAATGTCTTAGTCTATATCAAAAGAAGGCTGGCGATGTGTGCCCGGAGACTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
792 GGAAGGACCAGAGAAGCAGTGAAGATGATGAGAGATTTAATGAAGGAGTTTCCCCTCCTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
793 AGCATGTTCAATATCCATGAGAACCTTCTAGAAGCTCTTCTGGAACTCCAAGCTTATGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
794 GATGTTCAGGCAGTCTTAGCAAAGTATGATGATATAAGCTTACCAAAGTCGGCGACAATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
795 TGCTACACAGCCGCCCTGCTCAAAGCAAGAGCTGTCTCTGACAAATTCTCTCCAGAGGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
796 GCGTCTCGGAGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAAGCCATCCACAGAGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
797 GTGGAATTTAATCCACACGTGCCAAAATATCTACTAGAAATGAAAAGCTTAATCCTCCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
798 CCAGAACACATCCTGAAGAGAGGAGACAGTGAAGCGATAGCATATGCATTCTTTCATCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
799 GCACACTGGAAGAGGGTGGAAGGGGCTTTGAATCTCTTGCATTGTACGTGGGAAGGCACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
800 TTCCGGATGATCCCGTATCCCCTGGAGAAGGGACACCTATTTTATCCATACCCAATCTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
801 ACAGAAACAGCTGACCGGGAGCTGCTTCCCTCTTTCCATGAAGTCTCAGTTTACCCAAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
802 AAGGAACTTCCCTTCTTCATCCTCTTCACTGCTGGACTGTGCTCCTTCACAGCCATGCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
803 GCCCTCCTGACACATCAGTTTCCGGAACTTATGGGAGTCTTCGCAAAAGCTTTCCTCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
804 ACTTTGTTTGCCCCCTTGAACTTTGTTATGGAGAAAGTGGAAAGCATCCTCCCCTCCAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
805 TTGTGGCATCAGCTGACACGGATCTGAGGGAGCCTCCCATCCTTCACTTTCCACACCATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
806 CACCATCTCTTCTGTGCCAACCTCTCATGGACCGCAAGAAAGCATGACTTTGAAAAAGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
807 AAACCATTCTGAGATTTTAAACTGCTCATGGACTATCAGTTCCTTATTAAAGGCTGGTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
808 TGTTGTACAAAATTTATTGATGTTCAGTTCTATTTTATTTTGCCTTCAAAACTGACTGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
809 CAAAAAGTAAAAAAAATAAATAAATAAACTTTTGTGTATTGCAAGAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
810 >comp45_c1_seq7 len=2200 path=[64315:0-205 64521:206-423 59797:424-912 60286:913-1456 60830:1457-1607 60981:1608-2199]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
811 CTCGGCGGCGCCCGGGCTGTCCTCCTAAAATACTAGTACAAGAAGTATAAATGGCCCGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
812 AGAGTGCAGGGACCGGGCCCACGTGACCGCTCCACGAAGGCCACCGGCGGGGGCTCGGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
813 CGCAGGCCGCGCGCTTTCCCGCCGCATCCGGGCGCCGGGCGAGCTCCGGGGACGCCGGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
814 CCTGGCGGCGGCGGCGGCTCGAGCCGTGCCTCGGGCGGGTGAATCATCCCGGCCGACAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
815 GAGCGCCGCGGCGGCCCGTAGCAGCGCCGGAAGATGGCCGAGGCGGGCGCGGGCTTCCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
816 GAGCAGCTCAAGTCCTGCATCGTGTGGTCGTGGACCTATCTGTGGACCGTGTGGTTCTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
817 CTCGTGCTCTTCCTGGTCTACATCCTGAGGGTGCCCCTGAGGATCAACGACAACCTGAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
818 ACAGTGAGCATGTTTTTGAACACGTTAACCCCAAAGTTCTACGTGGCCCTGACAGGCACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
819 TCCTCGCTAATATCGGGACTTATTTTGATATTTGAATGGTGGTATTTTCGCAAGTATGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
820 ACATCTTTCATTGAACAAGTCTCCGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
821 AACAACTCTTCCAATAATTCTAATTCCAGTAATGGAGACTCAGATTCCAACAGACAAAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
822 GTCTCAGAATGCAAAGTATGGCGAAATCCACTGAATCTGTTTAGGGGTGCGGAATATAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
823 CGGTACACTTGGGTCACAGGACGAGAGCCTCTGACCTACTATGACATGAACCTCTCTGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
824 CAGGACCACCAGACATTCTTTACTTGTGATTCAGATCATCTTCGCCCTGCAGATGCAATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
825 ATGCAAAAAGCTTGGAGAGAAAGGAACCCTCAAGCCAGGATTTCTGCAGCTCATGAAGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
826 TTGGAGATAAACGAGTGTGCAACTGCGTACATTCTCTTGGCGGAAGAAGAAGCGACAACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
827 ATTGCTGAAGCAGAAAAACTCTTTAAGCAGGCCCTGAAGGCTGGAGATGGTTGTTACCGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
828 CGCTCTCAGCAGCTACAACATCATGGGTCCCAGTATGAAGCTCAACACAGACGAGACACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
829 AATGTCTTAGTCTATATCAAAAGAAGGCTGGCGATGTGTGCCCGGAGACTTGGAAGGACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
830 AGAGAAGCAGTGAAGATGATGAGAGATTTAATGAAGGAGTTTCCCCTCCTAAGCATGTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
831 AATATCCATGAGAACCTTCTAGAAGCTCTTCTGGAACTCCAAGCTTATGCTGATGTTCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
832 GCAGTCTTAGCAAAGTATGATGATATAAGCTTACCAAAGTCGGCGACAATATGCTACACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
833 GCCGCCCTGCTCAAAGCAAGAGCTGTCTCTGACAAATTCTCTCCAGAGGCTGCGTCTCGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
834 AGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAAGCCATCCACAGAGCTGTGGAATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
835 AATCCACACGTGCCAAAATATCTACTAGAAATGAAAAGCTTAATCCTCCCACCAGAACAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
836 ATCCTGAAGAGAGGAGACAGTGAAGCGATAGCATATGCATTCTTTCATCTTGCACACTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
837 AAGAGGGTGGAAGGGGCTTTGAATCTCTTGCATTGTACGTGGGAAGGCACTTTCCGGATG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
838 ATCCCGTATCCCCTGGAGAAGGGACACCTATTTTATCCATACCCAATCTGTACAGAAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
839 GCTGACCGGGAGCTGCTTCCCTCTTTCCATGAAGTCTCAGTTTACCCAAAGAAGGAACTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
840 CCCTTCTTCATCCTCTTCACTGCTGGACTGTGCTCCTTCACAGCCATGCTGGCCCTCCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
841 ACACATCAGTTTCCGGAACTTATGGGAGTCTTCGCAAAAGCTTTCCTCAGCACTTTGTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
842 GCCCCCTTGAACTTTGTTATGGAGAAAGTGGAAAGCATCCTCCCCTCCAGTTTGTGGCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
843 CAGCTGACACGGATCTGAGGGAGCCTCCCATCCTTCACTTTCCACACCATCCACCATCTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
844 TTCTGTGCCAACCTCTCATGGACCGCAAGAAAGCATGACTTTGAAAAAGGGAAACCATTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
845 TGAGATTTTAAACTGCTCATGGACTATCAGTTCCTTATTAAAGGCTGGTTTTGTTGTACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
846 AAATTTATTGATGTTCAGTTCTATTTTATTTTGCCTTCAAAACTGACTGATCAAAAAGTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
847 AAAAAAATAAATAAATAAACTTTTGTGTATTGCAAGAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
848 >comp45_c1_seq8 len=2364 path=[59209:0-587 59797:588-1076 60286:1077-1620 60830:1621-1771 60981:1772-2363]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
849 GAGCTCTTCAGGAGGGGGAATGTGCTTGTGGTTTTTGGTCTTGTGCATTTTGTGACAAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
850 GAATTCCCTTTTGAATCGCGCTGTTCCCTTGAAACCCTGGAGCCTCTGGTTCAAGCAGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
851 CAGTCAGTCTGTGCAGTGTCCCTGACGTCATCCGGCGTATGCATAAGCTCTGCTATTGTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
852 TTACCGCTAGAGCAGGGCTGAGGACTGCAGTCTCTGCTGCTGCTCGCAGACCTGCCCTGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
853 GCTAGCTACCTAGCCCTGCCTCACTGCATCCCTCAAGAGCCGCGGCAGCCTTTCCTTGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
854 TGCTGGATTTTGAGAAGCAGCTCTTCGATTTGGGCTGGTGTAGGAGCCCTGGCTTTCCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
855 TCTCGAGAGAAAGCTGAAGCGCTCAGAGGAGAATCTGGCAGCTGGACATAGCTCGGACTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
856 CATTGTCTGGCTTCATGACCCCTGCTGTGTAGCCGGCTCATCTCTTTGCTCTCAGGAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
857 CATGCACATCTTACATTTTCCTACTTCCTTTTTCTTTTTCTTTCCCTTCTTCTAATTTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
858 TTTTAAAGCACCTTCTGGAGCCAGCCATGTTTGGTACTGAATCTTCATTGAGCATGTTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
859 TGAACACGTTAACCCCAAAGTTCTACGTGGCCCTGACAGGCACTTCCTCGCTAATATCGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
860 GACTTATTTTGATATTTGAATGGTGGTATTTTCGCAAGTATGGAACATCTTTCATTGAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
861 AAGTCTCCGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGACAACAACTCTTCCAATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
862 ATTCTAATTCCAGTAATGGAGACTCAGATTCCAACAGACAAAGTGTCTCAGAATGCAAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
863 TATGGCGAAATCCACTGAATCTGTTTAGGGGTGCGGAATATAATCGGTACACTTGGGTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
864 CAGGACGAGAGCCTCTGACCTACTATGACATGAACCTCTCTGCCCAGGACCACCAGACAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
865 TCTTTACTTGTGATTCAGATCATCTTCGCCCTGCAGATGCAATAATGCAAAAAGCTTGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
866 GAGAAAGGAACCCTCAAGCCAGGATTTCTGCAGCTCATGAAGCCTTGGAGATAAACGAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
867 GTGCAACTGCGTACATTCTCTTGGCGGAAGAAGAAGCGACAACTATTGCTGAAGCAGAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
868 AACTCTTTAAGCAGGCCCTGAAGGCTGGAGATGGTTGTTACCGGCGCTCTCAGCAGCTAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
869 AACATCATGGGTCCCAGTATGAAGCTCAACACAGACGAGACACCAATGTCTTAGTCTATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
870 TCAAAAGAAGGCTGGCGATGTGTGCCCGGAGACTTGGAAGGACCAGAGAAGCAGTGAAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
871 TGATGAGAGATTTAATGAAGGAGTTTCCCCTCCTAAGCATGTTCAATATCCATGAGAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
872 TTCTAGAAGCTCTTCTGGAACTCCAAGCTTATGCTGATGTTCAGGCAGTCTTAGCAAAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
873 ATGATGATATAAGCTTACCAAAGTCGGCGACAATATGCTACACAGCCGCCCTGCTCAAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
874 CAAGAGCTGTCTCTGACAAATTCTCTCCAGAGGCTGCGTCTCGGAGGGGGCTGAGCACAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
875 CAGAGATGAATGCAGTAGAAGCCATCCACAGAGCTGTGGAATTTAATCCACACGTGCCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
876 AATATCTACTAGAAATGAAAAGCTTAATCCTCCCACCAGAACACATCCTGAAGAGAGGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
877 ACAGTGAAGCGATAGCATATGCATTCTTTCATCTTGCACACTGGAAGAGGGTGGAAGGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
878 CTTTGAATCTCTTGCATTGTACGTGGGAAGGCACTTTCCGGATGATCCCGTATCCCCTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
879 AGAAGGGACACCTATTTTATCCATACCCAATCTGTACAGAAACAGCTGACCGGGAGCTGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
880 TTCCCTCTTTCCATGAAGTCTCAGTTTACCCAAAGAAGGAACTTCCCTTCTTCATCCTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
881 TCACTGCTGGACTGTGCTCCTTCACAGCCATGCTGGCCCTCCTGACACATCAGTTTCCGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
882 AACTTATGGGAGTCTTCGCAAAAGCTTTCCTCAGCACTTTGTTTGCCCCCTTGAACTTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
883 TTATGGAGAAAGTGGAAAGCATCCTCCCCTCCAGTTTGTGGCATCAGCTGACACGGATCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
884 GAGGGAGCCTCCCATCCTTCACTTTCCACACCATCCACCATCTCTTCTGTGCCAACCTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
885 CATGGACCGCAAGAAAGCATGACTTTGAAAAAGGGAAACCATTCTGAGATTTTAAACTGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
886 TCATGGACTATCAGTTCCTTATTAAAGGCTGGTTTTGTTGTACAAAATTTATTGATGTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
887 AGTTCTATTTTATTTTGCCTTCAAAACTGACTGATCAAAAAGTAAAAAAAATAAATAAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
888 AAACTTTTGTGTATTGCAAGAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
889 >comp45_c2_seq1 len=422 path=[66531:0-421]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
890 CTCATAGAATATGTGACCAGTAAGGGTAATGCTATATGTTTACTGACTGCACTACCTACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
891 AATTTTGTTTGTACTCAGAACCATGTTCCCACTGCATGTTTCTATTTACTCCGAAGTAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
892 ATCTTTTTTGGTATTGGCAGTACTGTGCTCTGGGTAGTGATTAGGGCAAAAGAAGACACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
893 CAATAAAGAACCAGGTGTTAGACGTCAGCAAGTCAAGGCCTTGGTTCTCAGCAGACAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
894 GACAGCCCTTCTCAATCCTCATCCCTTCCCTGAACAGACATGTCTTCTGCAAGCTTCTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
895 AAGTCAGTTGTTCACAGGAACATCATCAGAATAAATTTGAAATTATGATTAGTATCTGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
896 AAAGCATAGTGTGTGTCTTAAAAGACACGTTGTTAATCACTGTCTGTGCATGAAAAGCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
897 AG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
898 >comp45_c3_seq1 len=246 path=[66056:0-245]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
899 GAAAAGCAGAGACGTATTGAGTTCCCAGAGGCCCATTCAGCAGCCCTTCCTGGAGGACAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
900 GGCCTCCCAGGGTGCCAGCCTGCTGCTCTCTCCCCAGCTCTCTGACACATGACACAAAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
901 ATGCTGCTTAGGCTGTGCTTGGAAGACACCAGGAAACCAAAGCAGTCTGGCATTACAAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
902 CTGGCTCTTCATATCCCCTTTTCCATTTAAAGTAGGCTGTAGAGCGAGCTAGACAATCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
903 GTAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
904 >comp46_c0_seq1 len=223 path=[68937:0-3 83573:4-222]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
905 CCATCCATCCATCCATCCATCCATCCACCCACCCACCCATCCATCCGTCATCTATGTCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
906 CTATCTATCTCTCTTTCCTTCTTTCTCTTTTTGGTTTTGGCATTTTTCATACAGCATCTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
907 TACTAGACAAATACTATGAATGCTTTTACATTCCTGGGTAGTTGGCAGGTCTCTGTAAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
908 CAACATGGAGGAATCAACTTGAGAGAGAGAGAGAGAGAGAGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
909 >comp46_c0_seq2 len=1378 path=[67563:0-1373 68937:1374-1377]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
910 CTGGCCTTTATTACAATTTAAAAAGAACAAAGACAAGTTAATAAGTGTCTTTAATTACAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
911 TGTACCTGCTATTTACAAGTAATTATACTTTTAATATACAGCTTGAATAAGATTTGTTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
912 ATGTGAACTAGAAGCCATCACAAGTTCAACTCCACCCTTTTATGACTGTTCAGAATTGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
913 ATATTAGCATTAGAGACAGAAAACAAACACCCGTGTCAGTTCCTTAAGTACCATTATTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
914 ATGAAAATTTGTGATCTGGCCACAGAAGAGTAGAAATAATGCCTCGACTAAAACGTGACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
915 AAAAGTATTGCTATCATCTAATCCTAAACACAATGCTGGATCATTAGCAATGCAACCGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
916 GTTTATACAGCACCTTTTAAGGAGATCAAAACCTTTGTCTTACATTATCTGACTTGTTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
917 CAAAATATCCCTATGAGGTAGGCAATGGTTGGTAATCATTATCCCCATCTTGTAATATGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
918 AGAAACTGAGGCACAGAGAAGTTCAATCATTTGCTTGAGGTCACACAGTAAACTTGATGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
919 TGGGACAGGGACCACAGCCCTGTGCTCTTGTCTCCAAAACGAATCGTTCTCTTTAGACAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
920 AACTGGACAATTTAACACATTAATTCACTTTTCCAAGAAAATTTAAAATGCACTTCCCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
921 TCCCCCCAGTATAAATTATTGAAACACTATGACAAGAACAGACACCTGGGTAGTGGCAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
922 CAGATATATGCTCTGCTGGAAAGGCTATGGGAGCTTTGTTCTTTTATTCCAGGAGTTGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
923 CTTCCTAGAGAAAACAGTTTAAAGTCTTTAGAAAAAATATACTGGGAGGGCTACTTCTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
924 TGGCTTACAGATTTACAACTTTAATGACCTCACTAAATTTTCCTCAAACTTGGCTTACTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
925 TTGAGTTACAAAGAAAATATCTAAATAAAAAGTTTAACCTTTGAGTTCATAGTCTTCCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
926 TACATTTATTGTTTACATGTTAAGACTAGCACTCAACCTGTGGGTGAATCCTTTACATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
927 ACTGTTTACATGTTAAGACTGGCACTCAACCTGTGGGTGAAGACCCCTTTTGGGTTCTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
928 ATCCTGCAGACCAGACATTTACATTATGATTCATAACAGTAGCAAAGTTACAGTTATGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
929 ATGGCAATAAAACATGGTGGTGTTTGGGGGGGGGGGGTCACAGCATTGGGAAGGTTGAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
930 AACATGACCTTACGGGCAGGTGGGAAGTGGGGACAGGCAGGAGCTACTCACAACACTTAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
931 TTCAAATTTTGCTATTTTTGTCTTCCTTCAGAGTCAATTGTGTATTTGATACTTTAAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
932 ATGTACTAAAAATACATAGAATGATTGGAGTTCCAGACTCAACTCTCTAGGCACCCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
933 >comp46_c1_seq1 len=499 path=[72380:0-4 77894:5-460 78350:461-484 78374:485-498]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
934 AAACCAAACCAAACCAAACCAAACCAACCCAACCCAAACCAAAGCAGTCCTACAGAATAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
935 CAGTGCCAATCCAAGGGGGAGCCTGTACTGGGCTATCTGAATAGTAAATGGAATGATCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
936 TAGTGCTGCCTTTTAAGCACAATTATGCTTCCAATTTCCATCTGAGAGTAAAAATCCGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
937 CAAACATCTTTTAGTTAAATAAAAGAACCTGAAGAACAAGAAAACATAAATATTTAGAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
938 TACAATGTAAAAATAATAAAAGACGCAAAAAACCCTTTTCCCACAAAGAGTATTGGTATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
939 ATTTAGAAGTTTTGCAGACTTAGTGATGTGATTTAGATAAGGACAAGTCAAAAATATGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
940 GCCAACACATTTATAAAAATGACTTTCTTTTAGAATATTGGAAATGTTTCACATAAGATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
941 GTCTGTGGTGAGTCTATAGTCACCGCTGTATACTCTGTGGTGGTGTTTAGTGTACAGTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
942 AGCCTGCTGTAGACTCAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
943 >comp46_c1_seq2 len=1031 path=[71354:0-1025 72380:1026-1030]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
944 AGAGAGAGAGAGAGAGAGAGAGAACGAAAACAAGAGCACCAGCCACACAGTACAGAGTAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
945 AGGGGAATTGGGAATTTCGTGTCAGGTTCACCGACCAGGTTTCCATGGAAAACTCATGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
946 TTAGGGATGGTCAAAGTCACCAGCCTTGGCTTGCAGGTTAGTGTGTGACCGTCTCTTGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
947 GCTTGAGACACAGAGACTGGGCGGTGGCCACTGCAGACTCACAGTCAGTGGTCCCACCTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
948 GGCTGGTGAGCGGTACTGAAGAGAAGCTGGACATGCTGTAGATATGGCACAGAGGTGACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
949 GCTGTGTAGACACTCATGATGGGGACGAGGTCAACGGCAAATGGATGAAGGGGCAGTAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
950 TCATCTGTGCAGGAGCAGGCAAGTGAGGGGAAGGAAACACTGACTTCACACCCTAGTCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
951 TCTGCCTCTTGAAGGGCATCAGAGTCAGGGAAGAACCCTAAGATTCCGAGGCTAATGCGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
952 ATATTTTTGAACATAGAAAGCCAAGGTTCAAGCATTTTCACATCGAACAAAACCTCTTTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
953 CTCTTTCATGAACTAGATGATCAGATAGTTACAATTATCAGCAGAGATAATTAGTAACTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
954 CTTTGTGTCTTGGACTATTTTGTACCCTACTTGAATAAGAGGAGTACCTTCAAACTGGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
955 GGGAACCTTAGGGACATGCTACAACCAACCATCCTTATGAGGGAACTTGTTGGAATGAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
956 ACTACAGCCTCTACTTGTAACAGTGTATTTATCTGCTTGTATTTCAAACTCCCCCACAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
957 TCACAAGGCATGTAAATACAACAGCAACATTGAACAGGTGCCAGGTTAACATAGAAGTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
958 GAGGAGGGACTGTCACCAACCTTTACAACACATATAAGGTGATTTGAGATAACCAGAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
959 TTTTGTTTAGAATAGGCTCTGGCCTTGTAGCCCAAGTTAGCCTTGAATGTAAAACCGTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
960 TTCTTTCCCACTCTCCCTCATTATAGGATAACAGGCATGGGCTGCAGTGCCCAGTTCCTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
961 GATCTTAAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
962 >comp46_c1_seq3 len=4999 path=[78350:0-23 78411:24-1094 79482:1095-2841 81229:2842-4932 83320:4933-4998]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
963 GGTGTTTAGTGTACAGTCCAGCCTCCTTTTGATGATGGTTTCCCACATATTTAAACTCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
964 TAACATTTAGACTTTAAACCAAACTACAGGCTCCGTCCAGCTCAAAGACAGGAACATGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
965 TTTTAGCCAAGTAAGTAACTCAAACTGACTGGTGAGGGGCTCGCTTTGCTCAGCCGAGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
966 TCAGGTACATGGTTACCACACATTTCCTGCTGTGCTGGCATCTTTGGCTTGATTGTCCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
967 GCTTTTGTTTTGCTGTGAGCTTTTGCTCTTTCACTTGGCTAAAATCTGTATCCTCACAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
968 CTAGTGCGTATTCCTTTGGATTTATGTTGGGGAGAGGGTCTCCAGGTTCCTTGTACAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
969 CCTGTGAGATCGCCCGTCACATGTTCTCTTACCACTGCGAGCTTCTCGGACCAGGAGAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
970 GATGTCAGTGCACACTTCATGACCATGCTACATACCACGTTTGGAAACTCTGGGACATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
971 GGACAACAGGAATTCAAGATGACATGATTATCTATAATGAACTTATCTCTGAAGAAAGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
972 TTTTATGGAATCTTGAAGAACAGAACTCAAGTGAGCTGCAGAAGAGATAGAAGTAGCTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
973 GATGGAGACAACTCGGGGTCTGTCCGACTGGGATGGATACTCTGGGTTCACCTATGAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
974 GTTCCAGGAAGTAAAAAAGCACTTTGAGAAAGACTAAGGAGGGGACTCTGGCGGCCATGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
975 CTGACAAACTCAAACTGACAAAAGGAGACATCAGGTACTATTTCTTCAAGAAGGGGCGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
976 AGATGAAGCTCAAGCGGTTGTCTAAGGCCCTCACGAATTGGAAACTGTGCTGCTGCCACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
977 GTGCATCAAGAGGGACTACCGGGCAGAACCCCAGAGTCCTCTCAAAATGACCCTGGATTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
978 CCCGAAGCTCTGGGAGCCTTGAAGAGTCTCACACTCTCTTCTGGGCACCAAAGCAGAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
979 GGCAGGTCATAGGATCTCTGACTCTTGGGCAAAGGCTCTTTACTGTTAATGTTTTTCAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
980 TTCCTTCTTGGGGCAGGGGGCTGATGGGTTTGATGTCTCTGGACGGTACATGAATAATAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
981 AGCGTGCATTCATAGAAAAAAAGAGTTTTATACTTTAGAGATCATACCAGCTTTCCTGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
982 AAGACTTTTTATAAAACATAATCAAACTCCTGAGCTATACGATGCCTGTAAGGAATTGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
983 TGGTGGCAAGCACATGTCCAGGAGCGCCCTGTGGCACGGGGAGTGGCATGTGATGAGGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
984 ACCCTCGTGGCCTGAGAGATGGTTGGGCCAAACTCATTAATACACAGCAGCGAAAATCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
985 TGGTTGCAAACAGCCTTGCCCATTACTGCTCCCAGTTCCCTGGGGTATCCCACCGCTGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
986 GCGGGGCCAGCAGAGGCGATGCTTATCCATGTGCCCACCATCTTCATGGAGGATTAGGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
987 AATGCCAACAACATCCAAGAGAGTTTGCAGCTCCACAGGCATGATCCACAACCAGTCGGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
988 GAGTACAAGGATGGAAAGACAGGCCACAGAGCTGGTCATGTCACCTTCCCACGCACACTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
989 TTTATCACAGGGAAGGAAAATAGCATGATTCTTAAGTCATTAGAATAAGATGCCACATGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
990 CAGTAGGAAAGAAAAGGCTGTCTCTTTATCTGTGTCCTGCACTTCAGCGAGGCTCCTCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
991 AAAATGAAAAGTGAACAGAGTTTCCAATGCTGGCCTGGGAAGATCTAGAGCGATGACTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
992 ACTTTCAATGTGAGCTGCTTCAGCTACTGATTCCTGTGAAGCGATGAACAACCGGGCAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
993 TTGCGTCGGCAGAGACTGAACGGGGGCACCGCCACTGCTGTCTTTAGAGGGGTCACTAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
994 CATCAGTGAAAGTCTGGTACTTTCAGGATTCCCAAGTCAGATTTTGTTCTATTTATAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
995 CCGAGTGTCTCAGCAGTGACACATTTATGTCCATTGCATTTTGCCACCAGTGCCTCAGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
996 TTTTGGATCTAGAACTCCCAGTACTGTCTGAGGAGTTGAGCCTTAACAAGTCTTCAATGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
997 TATATTACTCATTAGAGAAAAGAATAAAAACTGCTTATAATTATCTAGCTTATGTGCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
998 ATGGTATCGTTTGTAAAATGAGAGTATAAATCGTTGTACATAAAATCCAAATAGTTAATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
999 TATATTTTCTGGCACTTTCTAGAAATTAGGCATTAAACATAAAACATCTTATAAATTTAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1000 ATAATAAAATAAATGTTTACATTTTACTCAGATTACCATCAGATTATAGGAAAGTCACAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1001 GTGGGCAGCAAAGACCACCGGGAACACATTTATGTCCGCAGCCCTTTGGGGATAGACACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1002 ATGGCTGCCATCCTCACAGAAACATTAAGGCTCTGTTTGGAAGGAAGAGCACTGGGTGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1003 AACAGCTACAGAAGTACCACAGTAGTTATGAAAATCCAAACACTGTTGGGAAGGTTTTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1004 ACATAGAACATTAAAAAACATCTCAACTGACCTCATGAACCTCTGAAGACTGCAGATGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1005 GTGTCCAACGAGGAGCAAGAACCCCAGAGACTCCAGGGACGGCCCACCCCATACCTCACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1006 GCCTGCACATCCAGGTTCCTTCCCAGGGACTAAGAGGCAGGTCTGGGAAGAGGGTGGGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1007 AACGGCAACCAGTTTCTCTCCATGCTAACATTTACTGAAGGCCAGTGCAGGCCAGTGGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1008 GACCATCCTTGGGATGAAGCACACATGGGAGGTCTCCAGGGGTGAAGTGCCAGTGTTTTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1009 GCATGAGGAGCAGAGGGAAAGAGAGCAAGGATGGAAACCTGGCTCTTCTTCAGCAGGCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1010 TGGGATTTTGGCATTGGTGGGTGGGGCTTCCCCGCCAGCACCCACAGCTGGCCTTCCTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1011 GTGGAATGTGGAGGTGAGGGGTCCCAGGGGTTTCTTGGGAGCACTGGAGGGTGGCTGCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1012 TGGCAGGCAGGTCCGTACCTTACTGTTTTGGAAACTGGGAGACAACTGGGAGACTGCACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1013 TGAAGATTTCAGTCAACCAAAGCAGCGAGAAACTGCAGCCACCTCCTTTCCACAGCAGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1014 CTGCTGATCACAGCCTCTTTTAGTTGCTAGAGCCTGGTGACATCTCTGCATTGCTGCAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1015 TCCCCAATGCTCTCGTAGTCACTCTCCTTGGGGACATGGTGGCCATTGGTCTCCAGAGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1016 ACCTTCTCATCCTCTCTGTTTAGAGTCTGTATGGCTTCATAGTCAGGCTCTGGCTCCTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1017 CTGGGTCTCCTTGCCGGGGGCAGTGTGCTGATGCTGTTGGGAGTTTTCTCAAAGTCTTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1018 ACAGTGGCATAGAGGTCATTGCAGGAAGATGACGACCTCTGAGGGAGGCCCTTCATGGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1019 TGGCAGGCAGATTCTGGCCCTTTCATACATGGTCCAGGTTTGTGTGCCGACTGGCCAGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1020 TTATTCACTGAGGAATACATTGCTGAGATCTCCTCTTCTGTAAGAGTCGGGTCTTCTTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1021 CGAGACTTGTATGACAAGGAACTAAATCTCTTGCTGTGTCCACCGGTCCCTTCTGCAGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1022 TGCTCCTCTGCCTGTCCTCCTCCCTCCTGGGGAAGGTTGGCATTCTCATCCAGAAGCTTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1023 ACCGGGACAGGAGGTGGGCTTTCCTCGTCCAGGTCACTGCAAGTTCCCAGAATGCTCTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1024 GCGTTCGCGCTGTGGCGGCACTTTTTGTTTCTGTCCACAGAGGCATATTCAGCAAAGTCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1025 GCCTTGCCCTCCATGGGAGCCCCCTGAAGCTCCTTCAAGGCAGAAGTGGACTTGGACTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1026 CCACCCTGGCCTTTGTCTGCCACTTCCTTGATCTCCTTCACTGTTTCATACAGACAGTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1027 TCCACCATGTTCTCCTGGGAGGAGCTGTCCTTGAGCACCTCGTAGGGCCCCTCCACTCCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1028 GGCCCCAGTTCCGTGTCTGCAGCCCTGGCTGTGAGAATCTCGTCCACGGCGTTCTCAGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1029 GGGATCCTGGGCAGCTCCCGGCTCTGGTGGCACTTGGCCTTTCCTGTGCTGTCCTGGGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1030 TCCAGGAGATCGGAAGCCGAGGTCTGGACTTCCTCATAGTGCTGCATGCAGGTCAGCGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1031 CTGTCTTCTGAAAGAATGTCGCCATTGGTGAGCACCCCGTTCTGTTCGCTGCTAGCCAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1032 GCATCTGTTGTCAGGCTGGTTGCCGAATGGCTGAACATGTCCTTGTCGGAAGGCACATTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1033 ATCAGGTTCTCATGGTCCCCGCTATGCTGCCGTGGCTTCTTCTCTCTGTCGCAAGTGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1034 CACAGGAGGACGAGGAAGGTGATGAGGAAGAACATGGCCACGGCAGCCAGACTTCCCCAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1035 AGGACCATCTGCATCTGCATCTGCCCACTGCTCAGTACGCTTCCTGCAGGGCCCATGGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1036 GGAGCTGGGGTGACCAGCAGGTGGGGTCAGTTCTTCATAGGAGATCACATGGGTCTAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1037 GGCTTCATCCTCCTTGGAGAAACGGTTGTCCAGAAGAGGGTTTCGTTCACGTGTCAGTAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1038 GCTGGGGTTCTCTCTTCCTTCTTGGCCAACTCCCAGCTTTGAAGTTGTGCTCCACTGTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1039 AAATCAGAGAAGAACCCAGTGTGTTTGGTTCGCAGAGGTCTTCTGGGGCTCCAGAGCTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1040 AAAAAGCGCTGCAACTCCGCTGCTCGCAGCCGGGCTGGCCCGCGGTGGGCAGTGGTAGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1041 GGCGCAGGACCCTCCTGATCCTCGTCGCCTCGGTTCTGCCGTGCCGGGGGAGGTGCGCTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1042 TCCCGGGCGCACCGGGCGGCCGCAGAGACTCGGACTGCACCGGGAACCCGAGCAAACGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1043 GTCGTGGCCGCCAGCCCTTGAGAGCTGTGCTCGGAGCTCCGGGTGCGTGTCTCCCTCTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1044 GAGGGAATGCGACACCACGGAGTCCCCGCACGAGAGGCTCCAGAGCGCTGCAGAGTCACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1045 AGTCCGCCCCGGAGGAGCAGTCACAGCACCCGCGCGCCGGGCGGGAACCGCAGTCCGCAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1046 TGGCCGCCGCGCCGCGGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1047 >comp47_c0_seq1 len=1442 path=[92673:0-183 94089:184-185 89297:186-463 85618:464-547 85702:548-571 89634:572-1441]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1048 CAGTGGCACTGTAGAGGTAGGACCTGGCTTCACCTCAGCGCTCCTTTCTAGACTCAACAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1049 ACACAGAGGCTTTCTAGGGACTTCACTGCCTAGGGCTATGCAAAGGGGAAAGCCTGCTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1050 GGCTTCACCTACCCTGAAGCAGTCAGATGTGTTGTTCAACTACATCTGTATCTTTCACCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1051 TTACCTATTAAGCAACCGTTATGCAAAGCAAGACCTGAGTTTCATTATTCCATGCTTGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1052 GGGTATGCTGGGTGCTTTTCTTTTGATTGGATCTGAGCCAAAGGGAGGATGATTTTGCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1053 AGGAATATATATGTCCAGATTCCAGGACCTAGAAAACAATTTCTGCTCCTTCCTGGCTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1054 CGAGATGCCGTTGGTTCAGTCTGGGCTTCAGTTTATCCATCTGAAGGATGGGAACTGCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1055 TAGTTTCTCATGTTACTGGGAGAAACATCATGATCAAAAGAAACCTTCAGAGCAAACCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1056 CCGGAAATGGGGAAGGTGAGCAGCAGCAGCAAGAACCCCAGGACACTGACGAGGCCATGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1057 CAGAGACAGGAGGGCCAGCTCTCCGGCGCGTCTGGGGGCAAAAGAGCAGAAGCAACCACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1058 GAACACCAGCTGGGCCTGGCAGGACAATTTCAGGCACCGTGTCCCAGAGTACAGTGGGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1059 ATGTGTATGTTTTGCCTGTGTTCTGCCCCAAAAGCTCCCCATAGCGAGTTAGGGACCTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1060 ACCATAACTAACCGGTACAACACCCTACAGGAGACTTTTCTCTCCCAGGTGAGAGCCACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1061 GAATCTGAGAACATGATCCATTCGATTTCTCATTGCTGGACATAGCATGGACCAACAAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1062 CCTTGCCTAATGAGTACCGCCCACCCAAACCTGGAATAGAGAGCACTCATGCTGGGTGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1063 GTGGACACTGCTGGTGTTAACACATTCTACTGGCCACACCACAAGTATGCTTTCAAGGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1064 TCATTACAGAGGAAAGGCTTCAGCTACTAAGGATAAAACTAATGCTCACAAGTAACAGTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1065 ACAGTGGGACTAAAGTGCTAGTTTAGTATTTATTCCCACTTTAATGCCCTGAAAGAACTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1066 TATCTATATCTATATCTATATCTATCTATCTATCTATCTATATCTATAGTGTACTTCAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1067 TCAAGCCTTTTGGCAGGAAGAACTAAGAATCCTGAATGGGTGTTGAGCAAACAGGCCCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1068 AATCTGGGGATGAGCTTGCTATCTGTTCTCTCCTCCCCAGCCCTAGACAGGAAGGTGACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1069 AGAGACGTCTGTTCTATCCTTCAAGAAGCCCCTGCCTGCAGGACAGTCTAAGTCATAAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1070 TAATTCCTGACCTCTTCAGGGAAGGAGGAATCCTAAGAACCGGGCAGAAGAGCCGGGCGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1071 GGTGGTGCACGCTTTTAATCGCAGCACTTGGGAGGCAGAGGCAGGCAGAGGAAATTCTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1072 AG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1073 >comp47_c0_seq2 len=2899 path=[83977:0-1640 94089:1641-1642 89297:1643-1920 85618:1921-2004 85702:2005-2028 89634:2029-2898]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1074 TTCCACACCGTAAATGTCACATTTATTTGTTGGAGGCTCCAAGCCTCTATAAGCACGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1075 CAGCAGGGCTCTCCCACATGCTGCCCTGAGCCCAGCTCCTTAAACATGCAGGATGGAGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1076 AGAGGATAGGACCCGGTGTCTTCAGGAGCAGACCCATAAGAAAAGCAAATTGTTCTATCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1077 CATGCCCTCCCCACCCAGCCTGTTCTGGCAGGGCCGCCTGGATCAGCTGCAGTAACCCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1078 TCTTGAGGGCCACCCTTCCTCACCTTCCCTTCCCTGTGATCTCCCTGAATGTCAGAGCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1079 TGATCCATGTGCTTTGACCCTTCACATGCTGCCATTCAGAAGCTTCTGGGCTTCTCGTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1080 CTCCGGTCGGTCAGGTTATCAGCTGGGTAGGGCAGGCCAGGCTCTCTGTCTTCACTCTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1081 GTTCCGACTCAGCACTAAGCATTTGTTGGGGATTGAACGAGCAAAGGCCTGTCCAGAGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1082 CTACCACAGGCTAAGGGGTGGTACACCCGACTCAGCTGTGACCAGCAGTAGATGTCTCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1083 AGCCTCCCGGGCTCCTCGTTGGGACTGAAACATCTTCAGGCCTCAGTTTTCCATGGCCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1084 AACCAACGCCTCCTATTCCAAGAGGCTTCTCTGGGTTGGCACCAGGTTCAGGGCTAGGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1085 TCTGATGGACAACCAACACGGCTACTTCAAGGCCTTGAGTACAGCCTCCAGCTTCATGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1086 CACGGCCAGGTCACCCTTCACCTTCAGCCGCCCACTCATGTAGGCCCCTAAGGGCCGAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1087 TTCTTTGCTCAACAAGGCCTGCAAGTCTGCTTCAGCCATCTCCACCACCACGTCAGGGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1088 GCCATCAGGCTCTCCATGTCCCACGCGGCCTTGTCCTGTAGTAAGGTCCAGGAAGTAGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1089 ACTCTGGGTGCCACTGGGCAAGATGACATTGAACTGGTAGCAGGCCCCAACCTGGCTGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1090 CAGTGCCTCTGACAGGAAGGGTTGCAGGGCTGTGAGGAGCCCCTCAGCCACGGGCTGCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1091 CGGGCTGGGCTCAGGCCCGGCCCCAGCAAGAGAGGCAGGAGGTTCCACTTCATTTATCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1092 CTCCAAGGTGTCTGGCCCTGGGGATGGAACATGTCCGACCGCTGAGTTCATACTTCCCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1093 TAGCAAGTGGAGGGCCAGCTGTTGGAGGGTGCTGTCCAGGCTGGGCACAGTCAGGCTGTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1094 TTGCGGTGGCTGCAACACAGCCTCTACTGCCAGCTCTACACGGTCGACCTCCAGTCCCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1095 AGCTCTGGTCACGTCATTGATCTCCAGCAGGAGCTGGTCACCGATCTTGAGCTTCTCCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1096 CTGGATCTCCTGCAGTGGCCTTCTGAGCAGGGCCTTAGTCATGGCGTTGTGGGCTGTCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1097 GCGAGTAGCTGTGTTCAGGTCCTTCACAGCCATCACGGATAGCACTGGGTCCCAGATGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1098 GAACTGGACATCAGCTCCCACCGACAGCACAGCCCCATCCTTAGAGGCCAGCTTGCAAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1099 AGGAACGTTGAAGGCTCGGGTCCTCAAATCTACCCTCTGGAAGGAGTCAATAAAGGGCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1100 GAGAAGAACCATGCCAGGCCCCTGGGGGTTACGGATCCGGCCCAGTCGAAACACAATCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1101 CCTCTCATAGGTGGGCACAATCTATTAAGCAACCGTTATGCAAAGCAAGACCTGAGTTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1102 ATTATTCCATGCTTGCTGGGTATGCTGGGTGCTTTTCTTTTGATTGGATCTGAGCCAAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1103 GGAGGATGATTTTGCAAAGGAATATATATGTCCAGATTCCAGGACCTAGAAAACAATTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1104 TGCTCCTTCCTGGCTCCCGAGATGCCGTTGGTTCAGTCTGGGCTTCAGTTTATCCATCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1105 AAGGATGGGAACTGCCCTAGTTTCTCATGTTACTGGGAGAAACATCATGATCAAAAGAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1106 CCTTCAGAGCAAACCAGCCGGAAATGGGGAAGGTGAGCAGCAGCAGCAAGAACCCCAGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1107 CACTGACGAGGCCATGGCAGAGACAGGAGGGCCAGCTCTCCGGCGCGTCTGGGGGCAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1108 GAGCAGAAGCAACCACAGAACACCAGCTGGGCCTGGCAGGACAATTTCAGGCACCGTGTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1109 CCAGAGTACAGTGGGCCATGTGTATGTTTTGCCTGTGTTCTGCCCCAAAAGCTCCCCATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1110 GCGAGTTAGGGACCTCCACCATAACTAACCGGTACAACACCCTACAGGAGACTTTTCTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1111 CCCAGGTGAGAGCCACAGAATCTGAGAACATGATCCATTCGATTTCTCATTGCTGGACAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1112 AGCATGGACCAACAAGCCCTTGCCTAATGAGTACCGCCCACCCAAACCTGGAATAGAGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1113 CACTCATGCTGGGTGGAGTGGACACTGCTGGTGTTAACACATTCTACTGGCCACACCACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1114 AGTATGCTTTCAAGGGGTCATTACAGAGGAAAGGCTTCAGCTACTAAGGATAAAACTAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1115 GCTCACAAGTAACAGTCACAGTGGGACTAAAGTGCTAGTTTAGTATTTATTCCCACTTTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1116 ATGCCCTGAAAGAACTATATCTATATCTATATCTATATCTATCTATCTATCTATCTATAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1117 CTATAGTGTACTTCAATTCAAGCCTTTTGGCAGGAAGAACTAAGAATCCTGAATGGGTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1118 TGAGCAAACAGGCCCAGAATCTGGGGATGAGCTTGCTATCTGTTCTCTCCTCCCCAGCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1119 TAGACAGGAAGGTGACAAGAGACGTCTGTTCTATCCTTCAAGAAGCCCCTGCCTGCAGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1120 CAGTCTAAGTCATAAACTAATTCCTGACCTCTTCAGGGAAGGAGGAATCCTAAGAACCGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1121 GCAGAAGAGCCGGGCGTGGTGGTGCACGCTTTTAATCGCAGCACTTGGGAGGCAGAGGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1122 GGCAGAGGAAATTCTGGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1123 >comp47_c0_seq3 len=769 path=[92673:0-183 94089:184-185 89297:186-463 85618:464-547 85702:548-571 85726:572-768]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1124 CAGTGGCACTGTAGAGGTAGGACCTGGCTTCACCTCAGCGCTCCTTTCTAGACTCAACAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1125 ACACAGAGGCTTTCTAGGGACTTCACTGCCTAGGGCTATGCAAAGGGGAAAGCCTGCTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1126 GGCTTCACCTACCCTGAAGCAGTCAGATGTGTTGTTCAACTACATCTGTATCTTTCACCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1127 TTACCTATTAAGCAACCGTTATGCAAAGCAAGACCTGAGTTTCATTATTCCATGCTTGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1128 GGGTATGCTGGGTGCTTTTCTTTTGATTGGATCTGAGCCAAAGGGAGGATGATTTTGCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1129 AGGAATATATATGTCCAGATTCCAGGACCTAGAAAACAATTTCTGCTCCTTCCTGGCTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1130 CGAGATGCCGTTGGTTCAGTCTGGGCTTCAGTTTATCCATCTGAAGGATGGGAACTGCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1131 TAGTTTCTCATGTTACTGGGAGAAACATCATGATCAAAAGAAACCTTCAGAGCAAACCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1132 CCGGAAATGGGGAAGGTGAGCAGCAGCAGCAAGAACCCCAGGACACTGACGAGGCCATGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1133 CAGAGACAGGAGGGCCAGCTCTCCGGCGCGTCGGCCCCCGGCCCCACGCTGCCCGGCTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1134 GGGGACAAGCAGCCCTTCTGCGAACCCAGAAAGCCGAAGCTCGACTGCTGGAAACGATCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1135 AAATCCCCTAAGGGCAGTGCCCGGTAGCCAGACCTTCCAAGCATGACTTCTAACCGGGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1136 ACGCCCCGATCCTCTGCTGGGAGACTGCCCTGCCCAGCCTGTGGCAGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1137 >comp47_c0_seq4 len=2619 path=[83977:0-1640 85618:1641-1724 85702:1725-1748 89634:1749-2618]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1138 TTCCACACCGTAAATGTCACATTTATTTGTTGGAGGCTCCAAGCCTCTATAAGCACGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1139 CAGCAGGGCTCTCCCACATGCTGCCCTGAGCCCAGCTCCTTAAACATGCAGGATGGAGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1140 AGAGGATAGGACCCGGTGTCTTCAGGAGCAGACCCATAAGAAAAGCAAATTGTTCTATCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1141 CATGCCCTCCCCACCCAGCCTGTTCTGGCAGGGCCGCCTGGATCAGCTGCAGTAACCCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1142 TCTTGAGGGCCACCCTTCCTCACCTTCCCTTCCCTGTGATCTCCCTGAATGTCAGAGCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1143 TGATCCATGTGCTTTGACCCTTCACATGCTGCCATTCAGAAGCTTCTGGGCTTCTCGTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1144 CTCCGGTCGGTCAGGTTATCAGCTGGGTAGGGCAGGCCAGGCTCTCTGTCTTCACTCTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1145 GTTCCGACTCAGCACTAAGCATTTGTTGGGGATTGAACGAGCAAAGGCCTGTCCAGAGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1146 CTACCACAGGCTAAGGGGTGGTACACCCGACTCAGCTGTGACCAGCAGTAGATGTCTCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1147 AGCCTCCCGGGCTCCTCGTTGGGACTGAAACATCTTCAGGCCTCAGTTTTCCATGGCCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1148 AACCAACGCCTCCTATTCCAAGAGGCTTCTCTGGGTTGGCACCAGGTTCAGGGCTAGGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1149 TCTGATGGACAACCAACACGGCTACTTCAAGGCCTTGAGTACAGCCTCCAGCTTCATGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1150 CACGGCCAGGTCACCCTTCACCTTCAGCCGCCCACTCATGTAGGCCCCTAAGGGCCGAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1151 TTCTTTGCTCAACAAGGCCTGCAAGTCTGCTTCAGCCATCTCCACCACCACGTCAGGGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1152 GCCATCAGGCTCTCCATGTCCCACGCGGCCTTGTCCTGTAGTAAGGTCCAGGAAGTAGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1153 ACTCTGGGTGCCACTGGGCAAGATGACATTGAACTGGTAGCAGGCCCCAACCTGGCTGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1154 CAGTGCCTCTGACAGGAAGGGTTGCAGGGCTGTGAGGAGCCCCTCAGCCACGGGCTGCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1155 CGGGCTGGGCTCAGGCCCGGCCCCAGCAAGAGAGGCAGGAGGTTCCACTTCATTTATCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1156 CTCCAAGGTGTCTGGCCCTGGGGATGGAACATGTCCGACCGCTGAGTTCATACTTCCCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1157 TAGCAAGTGGAGGGCCAGCTGTTGGAGGGTGCTGTCCAGGCTGGGCACAGTCAGGCTGTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1158 TTGCGGTGGCTGCAACACAGCCTCTACTGCCAGCTCTACACGGTCGACCTCCAGTCCCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1159 AGCTCTGGTCACGTCATTGATCTCCAGCAGGAGCTGGTCACCGATCTTGAGCTTCTCCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1160 CTGGATCTCCTGCAGTGGCCTTCTGAGCAGGGCCTTAGTCATGGCGTTGTGGGCTGTCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1161 GCGAGTAGCTGTGTTCAGGTCCTTCACAGCCATCACGGATAGCACTGGGTCCCAGATGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1162 GAACTGGACATCAGCTCCCACCGACAGCACAGCCCCATCCTTAGAGGCCAGCTTGCAAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1163 AGGAACGTTGAAGGCTCGGGTCCTCAAATCTACCCTCTGGAAGGAGTCAATAAAGGGCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1164 GAGAAGAACCATGCCAGGCCCCTGGGGGTTACGGATCCGGCCCAGTCGAAACACAATCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1165 CCTCTCATAGGTGGGCACAATCTTCAGAGCAAACCAGCCGGAAATGGGGAAGGTGAGCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1166 CAGCAGCAAGAACCCCAGGACACTGACGAGGCCATGGCAGAGACAGGAGGGCCAGCTCTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1167 CGGCGCGTCTGGGGGCAAAAGAGCAGAAGCAACCACAGAACACCAGCTGGGCCTGGCAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1168 ACAATTTCAGGCACCGTGTCCCAGAGTACAGTGGGCCATGTGTATGTTTTGCCTGTGTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1169 TGCCCCAAAAGCTCCCCATAGCGAGTTAGGGACCTCCACCATAACTAACCGGTACAACAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1170 CCTACAGGAGACTTTTCTCTCCCAGGTGAGAGCCACAGAATCTGAGAACATGATCCATTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1171 GATTTCTCATTGCTGGACATAGCATGGACCAACAAGCCCTTGCCTAATGAGTACCGCCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1172 CCCAAACCTGGAATAGAGAGCACTCATGCTGGGTGGAGTGGACACTGCTGGTGTTAACAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1173 ATTCTACTGGCCACACCACAAGTATGCTTTCAAGGGGTCATTACAGAGGAAAGGCTTCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1174 CTACTAAGGATAAAACTAATGCTCACAAGTAACAGTCACAGTGGGACTAAAGTGCTAGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1175 TAGTATTTATTCCCACTTTAATGCCCTGAAAGAACTATATCTATATCTATATCTATATCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1176 ATCTATCTATCTATCTATATCTATAGTGTACTTCAATTCAAGCCTTTTGGCAGGAAGAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1177 TAAGAATCCTGAATGGGTGTTGAGCAAACAGGCCCAGAATCTGGGGATGAGCTTGCTATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1178 TGTTCTCTCCTCCCCAGCCCTAGACAGGAAGGTGACAAGAGACGTCTGTTCTATCCTTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1179 AGAAGCCCCTGCCTGCAGGACAGTCTAAGTCATAAACTAATTCCTGACCTCTTCAGGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1180 GGAGGAATCCTAAGAACCGGGCAGAAGAGCCGGGCGTGGTGGTGCACGCTTTTAATCGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1181 GCACTTGGGAGGCAGAGGCAGGCAGAGGAAATTCTGGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1182 >comp47_c0_seq5 len=2226 path=[83977:0-1640 94089:1641-1642 89297:1643-1920 85618:1921-2004 85702:2005-2028 85726:2029-2225]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1183 TTCCACACCGTAAATGTCACATTTATTTGTTGGAGGCTCCAAGCCTCTATAAGCACGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1184 CAGCAGGGCTCTCCCACATGCTGCCCTGAGCCCAGCTCCTTAAACATGCAGGATGGAGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1185 AGAGGATAGGACCCGGTGTCTTCAGGAGCAGACCCATAAGAAAAGCAAATTGTTCTATCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1186 CATGCCCTCCCCACCCAGCCTGTTCTGGCAGGGCCGCCTGGATCAGCTGCAGTAACCCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1187 TCTTGAGGGCCACCCTTCCTCACCTTCCCTTCCCTGTGATCTCCCTGAATGTCAGAGCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1188 TGATCCATGTGCTTTGACCCTTCACATGCTGCCATTCAGAAGCTTCTGGGCTTCTCGTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1189 CTCCGGTCGGTCAGGTTATCAGCTGGGTAGGGCAGGCCAGGCTCTCTGTCTTCACTCTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1190 GTTCCGACTCAGCACTAAGCATTTGTTGGGGATTGAACGAGCAAAGGCCTGTCCAGAGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1191 CTACCACAGGCTAAGGGGTGGTACACCCGACTCAGCTGTGACCAGCAGTAGATGTCTCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1192 AGCCTCCCGGGCTCCTCGTTGGGACTGAAACATCTTCAGGCCTCAGTTTTCCATGGCCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1193 AACCAACGCCTCCTATTCCAAGAGGCTTCTCTGGGTTGGCACCAGGTTCAGGGCTAGGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1194 TCTGATGGACAACCAACACGGCTACTTCAAGGCCTTGAGTACAGCCTCCAGCTTCATGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1195 CACGGCCAGGTCACCCTTCACCTTCAGCCGCCCACTCATGTAGGCCCCTAAGGGCCGAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1196 TTCTTTGCTCAACAAGGCCTGCAAGTCTGCTTCAGCCATCTCCACCACCACGTCAGGGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1197 GCCATCAGGCTCTCCATGTCCCACGCGGCCTTGTCCTGTAGTAAGGTCCAGGAAGTAGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1198 ACTCTGGGTGCCACTGGGCAAGATGACATTGAACTGGTAGCAGGCCCCAACCTGGCTGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1199 CAGTGCCTCTGACAGGAAGGGTTGCAGGGCTGTGAGGAGCCCCTCAGCCACGGGCTGCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1200 CGGGCTGGGCTCAGGCCCGGCCCCAGCAAGAGAGGCAGGAGGTTCCACTTCATTTATCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1201 CTCCAAGGTGTCTGGCCCTGGGGATGGAACATGTCCGACCGCTGAGTTCATACTTCCCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1202 TAGCAAGTGGAGGGCCAGCTGTTGGAGGGTGCTGTCCAGGCTGGGCACAGTCAGGCTGTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1203 TTGCGGTGGCTGCAACACAGCCTCTACTGCCAGCTCTACACGGTCGACCTCCAGTCCCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1204 AGCTCTGGTCACGTCATTGATCTCCAGCAGGAGCTGGTCACCGATCTTGAGCTTCTCCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1205 CTGGATCTCCTGCAGTGGCCTTCTGAGCAGGGCCTTAGTCATGGCGTTGTGGGCTGTCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1206 GCGAGTAGCTGTGTTCAGGTCCTTCACAGCCATCACGGATAGCACTGGGTCCCAGATGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1207 GAACTGGACATCAGCTCCCACCGACAGCACAGCCCCATCCTTAGAGGCCAGCTTGCAAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1208 AGGAACGTTGAAGGCTCGGGTCCTCAAATCTACCCTCTGGAAGGAGTCAATAAAGGGCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1209 GAGAAGAACCATGCCAGGCCCCTGGGGGTTACGGATCCGGCCCAGTCGAAACACAATCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1210 CCTCTCATAGGTGGGCACAATCTATTAAGCAACCGTTATGCAAAGCAAGACCTGAGTTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1211 ATTATTCCATGCTTGCTGGGTATGCTGGGTGCTTTTCTTTTGATTGGATCTGAGCCAAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1212 GGAGGATGATTTTGCAAAGGAATATATATGTCCAGATTCCAGGACCTAGAAAACAATTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1213 TGCTCCTTCCTGGCTCCCGAGATGCCGTTGGTTCAGTCTGGGCTTCAGTTTATCCATCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1214 AAGGATGGGAACTGCCCTAGTTTCTCATGTTACTGGGAGAAACATCATGATCAAAAGAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1215 CCTTCAGAGCAAACCAGCCGGAAATGGGGAAGGTGAGCAGCAGCAGCAAGAACCCCAGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1216 CACTGACGAGGCCATGGCAGAGACAGGAGGGCCAGCTCTCCGGCGCGTCGGCCCCCGGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1217 CCACGCTGCCCGGCTCTGGGGACAAGCAGCCCTTCTGCGAACCCAGAAAGCCGAAGCTCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1218 ACTGCTGGAAACGATCAAAATCCCCTAAGGGCAGTGCCCGGTAGCCAGACCTTCCAAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1219 TGACTTCTAACCGGGACACGCCCCGATCCTCTGCTGGGAGACTGCCCTGCCCAGCCTGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1220 GCAGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1221 >comp47_c0_seq6 len=1946 path=[83977:0-1640 85618:1641-1724 85702:1725-1748 85726:1749-1945]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1222 TTCCACACCGTAAATGTCACATTTATTTGTTGGAGGCTCCAAGCCTCTATAAGCACGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1223 CAGCAGGGCTCTCCCACATGCTGCCCTGAGCCCAGCTCCTTAAACATGCAGGATGGAGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1224 AGAGGATAGGACCCGGTGTCTTCAGGAGCAGACCCATAAGAAAAGCAAATTGTTCTATCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1225 CATGCCCTCCCCACCCAGCCTGTTCTGGCAGGGCCGCCTGGATCAGCTGCAGTAACCCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1226 TCTTGAGGGCCACCCTTCCTCACCTTCCCTTCCCTGTGATCTCCCTGAATGTCAGAGCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1227 TGATCCATGTGCTTTGACCCTTCACATGCTGCCATTCAGAAGCTTCTGGGCTTCTCGTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1228 CTCCGGTCGGTCAGGTTATCAGCTGGGTAGGGCAGGCCAGGCTCTCTGTCTTCACTCTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1229 GTTCCGACTCAGCACTAAGCATTTGTTGGGGATTGAACGAGCAAAGGCCTGTCCAGAGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1230 CTACCACAGGCTAAGGGGTGGTACACCCGACTCAGCTGTGACCAGCAGTAGATGTCTCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1231 AGCCTCCCGGGCTCCTCGTTGGGACTGAAACATCTTCAGGCCTCAGTTTTCCATGGCCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1232 AACCAACGCCTCCTATTCCAAGAGGCTTCTCTGGGTTGGCACCAGGTTCAGGGCTAGGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1233 TCTGATGGACAACCAACACGGCTACTTCAAGGCCTTGAGTACAGCCTCCAGCTTCATGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1234 CACGGCCAGGTCACCCTTCACCTTCAGCCGCCCACTCATGTAGGCCCCTAAGGGCCGAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1235 TTCTTTGCTCAACAAGGCCTGCAAGTCTGCTTCAGCCATCTCCACCACCACGTCAGGGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1236 GCCATCAGGCTCTCCATGTCCCACGCGGCCTTGTCCTGTAGTAAGGTCCAGGAAGTAGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1237 ACTCTGGGTGCCACTGGGCAAGATGACATTGAACTGGTAGCAGGCCCCAACCTGGCTGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1238 CAGTGCCTCTGACAGGAAGGGTTGCAGGGCTGTGAGGAGCCCCTCAGCCACGGGCTGCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1239 CGGGCTGGGCTCAGGCCCGGCCCCAGCAAGAGAGGCAGGAGGTTCCACTTCATTTATCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1240 CTCCAAGGTGTCTGGCCCTGGGGATGGAACATGTCCGACCGCTGAGTTCATACTTCCCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1241 TAGCAAGTGGAGGGCCAGCTGTTGGAGGGTGCTGTCCAGGCTGGGCACAGTCAGGCTGTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1242 TTGCGGTGGCTGCAACACAGCCTCTACTGCCAGCTCTACACGGTCGACCTCCAGTCCCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1243 AGCTCTGGTCACGTCATTGATCTCCAGCAGGAGCTGGTCACCGATCTTGAGCTTCTCCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1244 CTGGATCTCCTGCAGTGGCCTTCTGAGCAGGGCCTTAGTCATGGCGTTGTGGGCTGTCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1245 GCGAGTAGCTGTGTTCAGGTCCTTCACAGCCATCACGGATAGCACTGGGTCCCAGATGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1246 GAACTGGACATCAGCTCCCACCGACAGCACAGCCCCATCCTTAGAGGCCAGCTTGCAAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1247 AGGAACGTTGAAGGCTCGGGTCCTCAAATCTACCCTCTGGAAGGAGTCAATAAAGGGCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1248 GAGAAGAACCATGCCAGGCCCCTGGGGGTTACGGATCCGGCCCAGTCGAAACACAATCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1249 CCTCTCATAGGTGGGCACAATCTTCAGAGCAAACCAGCCGGAAATGGGGAAGGTGAGCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1250 CAGCAGCAAGAACCCCAGGACACTGACGAGGCCATGGCAGAGACAGGAGGGCCAGCTCTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1251 CGGCGCGTCGGCCCCCGGCCCCACGCTGCCCGGCTCTGGGGACAAGCAGCCCTTCTGCGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1252 ACCCAGAAAGCCGAAGCTCGACTGCTGGAAACGATCAAAATCCCCTAAGGGCAGTGCCCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1253 GTAGCCAGACCTTCCAAGCATGACTTCTAACCGGGACACGCCCCGATCCTCTGCTGGGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1254 ACTGCCCTGCCCAGCCTGTGGCAGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1255 >comp47_c0_seq7 len=2306 path=[83977:0-1640 94089:1641-1642 93127:1643-1866 91414:1867-2305]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1256 TTCCACACCGTAAATGTCACATTTATTTGTTGGAGGCTCCAAGCCTCTATAAGCACGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1257 CAGCAGGGCTCTCCCACATGCTGCCCTGAGCCCAGCTCCTTAAACATGCAGGATGGAGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1258 AGAGGATAGGACCCGGTGTCTTCAGGAGCAGACCCATAAGAAAAGCAAATTGTTCTATCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1259 CATGCCCTCCCCACCCAGCCTGTTCTGGCAGGGCCGCCTGGATCAGCTGCAGTAACCCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1260 TCTTGAGGGCCACCCTTCCTCACCTTCCCTTCCCTGTGATCTCCCTGAATGTCAGAGCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1261 TGATCCATGTGCTTTGACCCTTCACATGCTGCCATTCAGAAGCTTCTGGGCTTCTCGTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1262 CTCCGGTCGGTCAGGTTATCAGCTGGGTAGGGCAGGCCAGGCTCTCTGTCTTCACTCTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1263 GTTCCGACTCAGCACTAAGCATTTGTTGGGGATTGAACGAGCAAAGGCCTGTCCAGAGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1264 CTACCACAGGCTAAGGGGTGGTACACCCGACTCAGCTGTGACCAGCAGTAGATGTCTCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1265 AGCCTCCCGGGCTCCTCGTTGGGACTGAAACATCTTCAGGCCTCAGTTTTCCATGGCCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1266 AACCAACGCCTCCTATTCCAAGAGGCTTCTCTGGGTTGGCACCAGGTTCAGGGCTAGGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1267 TCTGATGGACAACCAACACGGCTACTTCAAGGCCTTGAGTACAGCCTCCAGCTTCATGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1268 CACGGCCAGGTCACCCTTCACCTTCAGCCGCCCACTCATGTAGGCCCCTAAGGGCCGAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1269 TTCTTTGCTCAACAAGGCCTGCAAGTCTGCTTCAGCCATCTCCACCACCACGTCAGGGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1270 GCCATCAGGCTCTCCATGTCCCACGCGGCCTTGTCCTGTAGTAAGGTCCAGGAAGTAGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1271 ACTCTGGGTGCCACTGGGCAAGATGACATTGAACTGGTAGCAGGCCCCAACCTGGCTGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1272 CAGTGCCTCTGACAGGAAGGGTTGCAGGGCTGTGAGGAGCCCCTCAGCCACGGGCTGCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1273 CGGGCTGGGCTCAGGCCCGGCCCCAGCAAGAGAGGCAGGAGGTTCCACTTCATTTATCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1274 CTCCAAGGTGTCTGGCCCTGGGGATGGAACATGTCCGACCGCTGAGTTCATACTTCCCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1275 TAGCAAGTGGAGGGCCAGCTGTTGGAGGGTGCTGTCCAGGCTGGGCACAGTCAGGCTGTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1276 TTGCGGTGGCTGCAACACAGCCTCTACTGCCAGCTCTACACGGTCGACCTCCAGTCCCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1277 AGCTCTGGTCACGTCATTGATCTCCAGCAGGAGCTGGTCACCGATCTTGAGCTTCTCCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1278 CTGGATCTCCTGCAGTGGCCTTCTGAGCAGGGCCTTAGTCATGGCGTTGTGGGCTGTCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1279 GCGAGTAGCTGTGTTCAGGTCCTTCACAGCCATCACGGATAGCACTGGGTCCCAGATGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1280 GAACTGGACATCAGCTCCCACCGACAGCACAGCCCCATCCTTAGAGGCCAGCTTGCAAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1281 AGGAACGTTGAAGGCTCGGGTCCTCAAATCTACCCTCTGGAAGGAGTCAATAAAGGGCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1282 GAGAAGAACCATGCCAGGCCCCTGGGGGTTACGGATCCGGCCCAGTCGAAACACAATCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1283 CCTCTCATAGGTGGGCACAATCTGGTCAGGACGGCAAAGGAAAGGGTTTGGAAGTGGTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1284 GCCTTGGCTGGCTGATGTCATTAGCCAGGTCTGCCCTCTCCACTCAGCCAGTCAAATGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1285 CTTCGGTGGGTGTGTGTAGTGTAGGCCAGAAGTCAACCCAGGCCACTTCCTATTTTTTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1286 TTTCCTCTGCCATGAGGTGAAGGACTTCCTGTGGTATACCCTCACCACTCTGATGCTCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1287 ATGGAAAACACTGGCTCAAGCCACCAAAGGCTGACACTCGTGAAGCTGAGAGCCAGACCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1288 AGCTCACTCTCTAGACTCTCACAGTGACAAGAACACTAACACACTTAGCTGTGTTTAGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1289 GAGAGACACCAAGCTCAGAGACAGACTTGCCCGTCAGTGAAAGGGGCGTGATCTGAAGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1290 AGAGCTCAGTGATGGGCCAGCCATGTCTTAGTCCCCACAAGTACTGACTTGATCAGGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1291 ACTTCACCTCTGGGGCCTGAAGCTACACATGACTCATTCAACAGAACTGTTTGCTCTTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1292 ATTGGCTGAGGAAAAGGCTAGGCTGCTCTAAGGAATGCCCTGAGGTTTCACTACTATCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1293 ATCCCTGGATCGCTTTGATAAGAGGGGCCAGGTCTCACATCCCTGGTTACAGGACATTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1294 CTTCAGTGGCACTGTAGAGGTAGGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1295 >comp47_c2_seq1 len=484 path=[88512:0-483]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1296 CCAGCGTGGGGCCGGGGGCCGGTGAGTGGCTACCCAGCACCGCGGACAGAGGGGCACCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1297 AAGACCTGTACTCTCTGCCTCTAGGAGGAAGGAGAGTGAAGGGGATAGGATATGAAGTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1298 GTGCCAGACAAGGTGTGGGGATGCTACCACCGATTTGTTCTCCCTACGGCACCAGCTGTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1299 GCTTTGGAAGCCGCGCAGCCCCATCTTCCCTAATCTTAGCCCATCCCGTTACTATTTCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1300 GGATAGCCCATCATGCATAGAAAGAAAACAGAGCCCTAGGCAGAGGGAGCCATAACCCAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1301 AAGGCATTTGTAGAGAAATGGAAAAAGAGTCGCCCTAGGGTAGCAGCGCAGGGAGCAGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1302 GTCTCCTGTGTCCTGGTGAAGATGCACAGAACAGAAAGCTGGGCCTGCAAGCTGCCTGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1303 TTGTTTGCTTTGGCTTCCTCTCTCCAAAGCCTGACTGTCCTTGGAGTATTCTGGTCCTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1304 GTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1305 >comp48_c0_seq1 len=5528 path=[94045:0-1233 95279:1234-1564 95610:1565-3646 104979:3647-3775 97692:3776-5228 99145:5229-5527]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1306 AATTGAATCCCTTTTTGTATTGAAAAAGTTGAAATGAAAGACATATACAGATTGAATGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1307 GTGATTGCAAAATATAATGCAATTTCGAACAATTAAAATTATGAAAATATACAAAATTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1308 TGGCAGCACACCTAGGTTTGTGCACTCTCCATCATGTGGAGATACTACAGAGGACTATCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1309 GTCCACAGCAAAGAAGTAACTTGAACCCGATTCCTGCTTTGCAAAGTCTTGACTTAGGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1310 CTCAGTAGTATAAAAAGCAGTGATTGTTTTTTTTCAGTCTGTAAACAGTAGTCGTGGTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1311 TTGTTGTTTTTAAATATCAATTTACCACACAAAAACAAAACAGAACAAAACCCATATAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1312 CCACAGCAGCAGCAGCACTGGGCCTTGAGCATTCTCCTTAGATGCTAGTGACATACAGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1313 GTGGGGAGAGGAGGCGTTCACTCAGTAAGAATATATATATATATATACTTTTAACTGTAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1314 ACAATGTATAGTGCATGACAGCTTCCAAAAGAATAGACTGATAAAAGATATTGGCCATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1315 CATAATTTCACTCTTTTTACAGTTATCTCAAAATGTAAGAATTAGATCTGATTGAAATGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1316 TACATTTAGTAAGAAAATCAGCAAGTAACAGAGGAAGTGTAACCCCACCATGACATTATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1317 TGTCAACAAGACCAGTGGAGGCCCTACATGTTAGAGCAGGAGACTGACAGGATAGACCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1318 TAGAGGAAGGAGCTATGCCTGAGGGCCATAGCCAGCCCATGCAGTCCATACGGACCATGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1319 TCAGCTGACAGAGCTTGATTTAGAGCATCTGTGACCGTGAACACACAGCACAATTTGAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1320 ATCCCAAGAAACATTATTCCAGGAGCCAGGGCAGTGCAAGCAAACGCCCACCCAGTCCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1321 TGGGAAACAGGCCACAACTACAGAACAGTACCACAAGGTGGTGTTCAAGGCAAGTCAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1322 TCAGGGTCTTCAACCCATCTTATTCAAAAAGGCCCTTTTTTTGGGGATGGAGCACGTGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1323 ACTCTGATGCAACCATGATGTAGGCTCCAGCACATCCTACAAGTAAGAAAGTAGTTTGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1324 CACATTTCCTTACAAGTAAATTAGTTAACCACTATGCTGATTTGTGAATCCCAGACAGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1325 ACGATAAAGAATGCAATGGTGTGCTGCTGGAGCAGTCCATGGGAAAGACCAGTCCTCACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1326 AAGTCATCTTTTCACCTTACAGTTACTCTCAGGAATAAAGTGACAGGGAACAAGAACAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1327 AGTGAGAGAGGAGATTCAGACACAAAACAGTCACGGAAAGCGCTGTCGGAGCTCGGCATG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1328 ACATAATCAAGAGCAGTTTTCATCTTCTCGCAGACCAGCCTCTTAAGCTGGAGGCTTAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1329 GAACAGGCCACCAACCTTAGGTGAACAACATGAATACACCCTGATGCAGTTCTTAAGTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1330 CAACAGGACACCAACATCAGGCCCATTATAAAACATACCTTTTTCAACCTAAAACTTAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1331 AACCTAGGTTAAACCCATATTTAATCCTTCCATCCCAAAGCCCCCCTTAAAAGCACTAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1332 GTAGTAAATCTGTTTCCAAGCATATTTATGCATATGTGTATCTGTGTGTGACTCATCAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1333 CAGCTGCACAAGGTGACTTAATGACGACACAAATATCAGACTCGCCTGCACACACCACGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1334 ACAACCTCTTCCAACAGCTTTTCCACCTTTCCCAGAAGACCAGCGGGGCTCAGTCTCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1335 AGTTTACGAAGCTCACGGTGGGCTGTGCTCAGATTTCTTCCTCAAAGTGGGCAGAACTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1336 GACTTCCTCACTGCCCTGAGGCTGAGCTCTCCCAGGAGCGGGGCTGGGGATGTCTTGGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1337 GCTGGGGCTGTGAAGCCAAAACTGAGCACCTGTGGTCATGTGTGGTGCCCTGTGGTGGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1338 CGTACTCAGCCACATCTCCCTTGAGCCTCTGTGGGTCCATCCCGGTTCTGTGGGATGGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1339 CAAGGAACCTGCCACTGAGGGAAGGGTCCTGCTCCTGGGTCTCCTACACCTGCTTTTGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1340 TCATACGGCTACAGTATGGGCTACCCAACCCAAACTCCCACTGCATGATGAAAAAGCAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1341 CCACCTGCTCTGAGGTCGATGCTATACTTATTCTCTATTGCTGCTTGTATAGAAATGTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1342 ACCCCAGCCATTCCTGGAGCTGGGAGTGAGGTGGGGTGCTCTTGTTGCTGTCCTGTATGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1343 ATGGACAGGTATAAAGAGTGGTAAACCCAGATGAGGGTCCTGCTTCTGGTTTATATACAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1344 TAATTTAATTTGTTGTATATATTTAATACCTCAAAAATTAATTCACGATCAAAGTCCTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1345 ATGCATTTGTGAGGAAGTTCTGGATTAGAACAATGCCAGCCAGATGTTGTTTTTGCTGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1346 GAAGGTGGTGTGTCATCTTCTGCTGTGGAACCTTCGGTGTTTATGGTTCAGAATTCCTTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1347 AATTTTTAGTTTCTTTGTAGTCTCAAGTCTTTTTCTCAGCAGCTCCCCTGTCTCCAGAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1348 TGAGTGCAGGTAACTGCTCTGGACTTTCCCCTGCACAGTCTTTGAAAATTTTCTTTCTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1349 CGTAGAGATAGAAGTTTCCTCTAACGTGAGCTCCTCAAGTCTAAGTGCAATCAGATGTGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1350 TTCAAGTCCTTTAATATGATCCACAGCATTGGAAATTACAGTCTGAAGTCCAGTAACGTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1351 GTCTTGGAAACTGGTGAAGATTGGAGGCATGATGATGCTCGTTTCTTTTTTCTTCTTTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1352 CTTTTTCTGGATATTTAATTTGTATGGTCGCAAGACACTTTCACAGTAACTGGACACCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1353 AAGGATGACAGAAATAGTCTCAACGAAGAAGACCAGATTCTCTAGGACTGCAGGCTGGGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1354 CTTCACATTGCCATCTGTAACTTCTAAGAGGTCCCCTTTACATGTGCTGAAGACACCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1355 CAATAGTTCTAGTAAAGATGCAAGACTATTTTCTATTCGTTCCTGTATATCCACTGTACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1356 CTCTAAGCCACTGGTGTCAAGCTCATACATGTCGCTGACCAGATGGAAGGACTGGACTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1357 GCACTGACAGCAGCCAGAACTGAAGAACCTGCCCATCCTGGTGGGAACAGGCCCAAGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1358 GGGGTACTGAATTTCCTTCTCAATAAACCGCTTCCCCGTCTCCACGGCCACCTCTAGCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1359 TTGGAGGAGCAAACGAAGGATGTCGATCCGGGAGGACACACCGTTCTCTGACATCTTCTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1360 TGAGTTCTTGGGCTCCACAGGGTGGGTAAGACTTGGAAGTCCACTGATCAGCCTCAACGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1361 TAAGGAGCGAATTCTTAACCACATGGTTTCTTCCTCCAAGGAGAGTTTCTTATGCTCTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1362 AGAAACATTCCTGTCTTTTGGATCCCAACTGAAGAAAACATCCAAGTCTCTGTTGTCTCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1363 CAAATCTTCCCATGGAACATCATCTTCCTCTGGCCTCAGATTCATTGATTTGATACTTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1364 TGCCAAGCTAATTGATATGTTTGCTTCAAGTAGAAGGTCTAACAGCATCCGCTCAGTGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1365 TACTTGTGCAAAATGGAGAGAATTATTCAGCCTGTTCCTAAAAGCGATAAACTCTGGGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1366 CTTCTCAAATGCACCATATTTGTAAGCTTGAATAATGTATTCTGAGGTCCTCTGATACAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1367 AGCCTCGCAGGGTTCATTTCAAGCCGTGGGGCTGCGCCACGGGTGCTAAGTCAACTGCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1368 TCGATGCGGCTTTTAAACCCCCAGGGGACACCTCGGCCAGCTGTTTGCCTGCAGTATATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1369 TTTCTGGTTGGAGTGGAAAAACCTGAGTGCAAAGTTACAGGACTGGGAGGCAGCAGCATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1370 CTGACCCAGGGATGCAGCATATCGGGTCAGAAGATAGCCAATGGTGTCGTGCTGGATGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1371 CTTAGCATCGAGACTGGAGTAGAGATCCACCACTGGTTCAAATGCACCCAGCACGCAGTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1372 GATCCGAACAAGTAGCAATTTGAACTGAGCATTGGATGGGCTGTGGGTTAAGCCTTCTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1373 CAGCAGAGTCAGGGCCTGCCAGACCGCAGTCTCCTCACCTGCTTCTCTCCATACATCAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1374 GAGCACATGAACAGCGAGCAGGCAGTAATAGTCTGAGAACTGCAACTCTGTCTTCAAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1375 AGAGCGCCCAAACTCCAGTCCGTGCTGGTACCTTAACATCAGTTCTTTGACCACATCCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1376 CTTCTGACTCTTATCCATGCTGTGGTACAAGCCAAGGAGCCGTGTCAGCTGCACAACACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1377 CAGATGCTGCTGCAGGCCTCGGATGTCGGCCGGCAGGGCAAGCTTATCCTCTGTCGGCGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1378 CGACAATGGAACAACTCCAAGGAGCTGGTTAATGAATTGTGTGCACTGGGCGGCAGGCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1379 GAGGTCAACGAACACCTTCAGGTCTGTGAAGCAGCATGGCTTATCCCCGAACTTCTTGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1380 ATACTGGAACATTAACTCTTCAGGGTCACCCAGCTTGTATTCGTCATTACAGCCTTGGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1381 CCGCAAGCGCCTGATGAGCTCCAGCTTAGCTAGGTGTGGGCCTCGGACATGTCGAGAGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1382 TTGTGATGCCTCTGTTATCCTGTCCTCTATAAACTTCACAGCATCTTCTGCAGAGCAGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1383 TACTTCCCCTTCTAAGGAGTGTTCCCCCTCAGCAGGCGGCGTCCAGGCTTCCTCAATCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1384 TCGAAAGACAGAATCGAAATAAGTCAGATAGAACTGCCAGTCATCTGAGTTTTTCAGAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1385 GAGGCGTCGGGAAAGGGCGTTGCACTCCGGCCACTTGCTCAGCTTCTTGTACATGGCCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1386 GCATTTGTTTTCCCGACTCTGAATTTCACTTGTCAACTTCTCTCCTAATTTTCCTCTAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1387 GACATCCAGGGCTTCCTGGTACTTTCCCAAGCGCTCCAGAATCATGTAATAAAGTTCAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1388 CTCAGCTTCAGCCTCTATCTTGTCCTCCTTCACCATCTTCTCTACCATTCTCTCCGCCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1389 GGGCAGAAACATGGTTTTGGAGAGGTTCTCATCCCGTGCGGATATAGATTGCATGATCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1390 GCTCATCACTGACCAAAAGTAGTAAGGGTTTTTGGGGACAATCTTATACAGAGCCATGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1391 AGCCTGCTGCATCTTCTTGTACTCGCCCACTCTGGCATAGGCCATGAAGAGGTGAGAGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1392 GTACTCCTCGCTGTTGGGAACTTTCTTCACAGCCGCCTCATAGAGCTTTGTGACTAACTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1393 CGGCCGGTGCATCTCTCGGTAGAGAATCGTCAGGGCCTGCAGGGAGTTGTCATCTGTGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1394 CTCAAGGGCAGCCACCTCCTGAGCCAAGGTGAAAGCTTCTTCCTGCTTGCCAGTTCTCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1395 TAAACCAATGGCCTTGAGAACCTTTGCACAGTGAAGATCTTTGTGTTTCTTCAACAGTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1396 ATCAGCTTGCTGAATTGCCATTTTATTATTTCCATTATCAAGATAATCGTAAATGGGCCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1397 GAGGCGCCGGTCGTTAGGGTCCTGCACATGGCCCCGCGTCGCCATGATGACAAGCGCAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1398 ACCTCAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1399 >comp48_c0_seq2 len=5399 path=[94045:0-1233 95279:1234-1564 95610:1565-3646 97692:3647-5099 99145:5100-5398]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1400 AATTGAATCCCTTTTTGTATTGAAAAAGTTGAAATGAAAGACATATACAGATTGAATGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1401 GTGATTGCAAAATATAATGCAATTTCGAACAATTAAAATTATGAAAATATACAAAATTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1402 TGGCAGCACACCTAGGTTTGTGCACTCTCCATCATGTGGAGATACTACAGAGGACTATCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1403 GTCCACAGCAAAGAAGTAACTTGAACCCGATTCCTGCTTTGCAAAGTCTTGACTTAGGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1404 CTCAGTAGTATAAAAAGCAGTGATTGTTTTTTTTCAGTCTGTAAACAGTAGTCGTGGTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1405 TTGTTGTTTTTAAATATCAATTTACCACACAAAAACAAAACAGAACAAAACCCATATAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1406 CCACAGCAGCAGCAGCACTGGGCCTTGAGCATTCTCCTTAGATGCTAGTGACATACAGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1407 GTGGGGAGAGGAGGCGTTCACTCAGTAAGAATATATATATATATATACTTTTAACTGTAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1408 ACAATGTATAGTGCATGACAGCTTCCAAAAGAATAGACTGATAAAAGATATTGGCCATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1409 CATAATTTCACTCTTTTTACAGTTATCTCAAAATGTAAGAATTAGATCTGATTGAAATGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1410 TACATTTAGTAAGAAAATCAGCAAGTAACAGAGGAAGTGTAACCCCACCATGACATTATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1411 TGTCAACAAGACCAGTGGAGGCCCTACATGTTAGAGCAGGAGACTGACAGGATAGACCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1412 TAGAGGAAGGAGCTATGCCTGAGGGCCATAGCCAGCCCATGCAGTCCATACGGACCATGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1413 TCAGCTGACAGAGCTTGATTTAGAGCATCTGTGACCGTGAACACACAGCACAATTTGAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1414 ATCCCAAGAAACATTATTCCAGGAGCCAGGGCAGTGCAAGCAAACGCCCACCCAGTCCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1415 TGGGAAACAGGCCACAACTACAGAACAGTACCACAAGGTGGTGTTCAAGGCAAGTCAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1416 TCAGGGTCTTCAACCCATCTTATTCAAAAAGGCCCTTTTTTTGGGGATGGAGCACGTGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1417 ACTCTGATGCAACCATGATGTAGGCTCCAGCACATCCTACAAGTAAGAAAGTAGTTTGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1418 CACATTTCCTTACAAGTAAATTAGTTAACCACTATGCTGATTTGTGAATCCCAGACAGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1419 ACGATAAAGAATGCAATGGTGTGCTGCTGGAGCAGTCCATGGGAAAGACCAGTCCTCACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1420 AAGTCATCTTTTCACCTTACAGTTACTCTCAGGAATAAAGTGACAGGGAACAAGAACAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1421 AGTGAGAGAGGAGATTCAGACACAAAACAGTCACGGAAAGCGCTGTCGGAGCTCGGCATG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1422 ACATAATCAAGAGCAGTTTTCATCTTCTCGCAGACCAGCCTCTTAAGCTGGAGGCTTAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1423 GAACAGGCCACCAACCTTAGGTGAACAACATGAATACACCCTGATGCAGTTCTTAAGTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1424 CAACAGGACACCAACATCAGGCCCATTATAAAACATACCTTTTTCAACCTAAAACTTAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1425 AACCTAGGTTAAACCCATATTTAATCCTTCCATCCCAAAGCCCCCCTTAAAAGCACTAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1426 GTAGTAAATCTGTTTCCAAGCATATTTATGCATATGTGTATCTGTGTGTGACTCATCAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1427 CAGCTGCACAAGGTGACTTAATGACGACACAAATATCAGACTCGCCTGCACACACCACGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1428 ACAACCTCTTCCAACAGCTTTTCCACCTTTCCCAGAAGACCAGCGGGGCTCAGTCTCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1429 AGTTTACGAAGCTCACGGTGGGCTGTGCTCAGATTTCTTCCTCAAAGTGGGCAGAACTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1430 GACTTCCTCACTGCCCTGAGGCTGAGCTCTCCCAGGAGCGGGGCTGGGGATGTCTTGGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1431 GCTGGGGCTGTGAAGCCAAAACTGAGCACCTGTGGTCATGTGTGGTGCCCTGTGGTGGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1432 CGTACTCAGCCACATCTCCCTTGAGCCTCTGTGGGTCCATCCCGGTTCTGTGGGATGGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1433 CAAGGAACCTGCCACTGAGGGAAGGGTCCTGCTCCTGGGTCTCCTACACCTGCTTTTGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1434 TCATACGGCTACAGTATGGGCTACCCAACCCAAACTCCCACTGCATGATGAAAAAGCAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1435 CCACCTGCTCTGAGGTCGATGCTATACTTATTCTCTATTGCTGCTTGTATAGAAATGTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1436 ACCCCAGCCATTCCTGGAGCTGGGAGTGAGGTGGGGTGCTCTTGTTGCTGTCCTGTATGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1437 ATGGACAGGTATAAAGAGTGGTAAACCCAGATGAGGGTCCTGCTTCTGGTTTATATACAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1438 TAATTTAATTTGTTGTATATATTTAATACCTCAAAAATTAATTCACGATCAAAGTCCTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1439 ATGCATTTGTGAGGAAGTTCTGGATTAGAACAATGCCAGCCAGATGTTGTTTTTGCTGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1440 GAAGGTGGTGTGTCATCTTCTGCTGTGGAACCTTCGGTGTTTATGGTTCAGAATTCCTTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1441 AATTTTTAGTTTCTTTGTAGTCTCAAGTCTTTTTCTCAGCAGCTCCCCTGTCTCCAGAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1442 TGAGTGCAGGTAACTGCTCTGGACTTTCCCCTGCACAGTCTTTGAAAATTTTCTTTCTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1443 CGTAGAGATAGAAGTTTCCTCTAACGTGAGCTCCTCAAGTCTAAGTGCAATCAGATGTGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1444 TTCAAGTCCTTTAATATGATCCACAGCATTGGAAATTACAGTCTGAAGTCCAGTAACGTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1445 GTCTTGGAAACTGGTGAAGATTGGAGGCATGATGATGCTCGTTTCTTTTTTCTTCTTTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1446 CTTTTTCTGGATATTTAATTTGTATGGTCGCAAGACACTTTCACAGTAACTGGACACCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1447 AAGGATGACAGAAATAGTCTCAACGAAGAAGACCAGATTCTCTAGGACTGCAGGCTGGGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1448 CTTCACATTGCCATCTGTAACTTCTAAGAGGTCCCCTTTACATGTGCTGAAGACACCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1449 CAATAGTTCTAGTAAAGATGCAAGACTATTTTCTATTCGTTCCTGTATATCCACTGTACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1450 CTCTAAGCCACTGGTGTCAAGCTCATACATGTCGCTGACCAGATGGAAGGACTGGACTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1451 GCACTGACAGCAGCCAGAACTGAAGAACCTGCCCATCCTGGTGGGAACAGGCCCAAGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1452 GGGGTACTGAATTTCCTTCTCAATAAACCGCTTCCCCGTCTCCACGGCCACCTCTAGCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1453 TTGGAGGAGCAAACGAAGGATGTCGATCCGGGAGGACACACCGTTCTCTGACATCTTCTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1454 TGAGTTCTTGGGCTCCACAGGGTGGGTAAGACTTGGAAGTCCACTGATCAGCCTCAACGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1455 TAAGGAGCGAATTCTTAACCACATGGTTTCTTCCTCCAAGGAGAGTTTCTTATGCTCTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1456 AGAAACATTCCTGTCTTTTGGATCCCAACTGAAGAAAACATCCAAGTCTCTGTTGTCTCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1457 CAAATCTTCCCATGGAACATCATCTTCCTCTGGCCTCAGATTCATTGATTTGATACTTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1458 TGCCAAGCTAATTGATATGTTTGCTTCAAGTAGAAGGTCTAACAGCATCCGCTCAGTGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1459 TACTTGTGCAAAATGGAGAGAATTATTCAGCCTGTTCCTAAAAGCGATAAACTCTGGGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1460 CTTCTCAAATGCACCATATTTGTAAGCTTGAATAATGTATTCTGAGGTATCTTTCTGGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1461 GGAGTGGAAAAACCTGAGTGCAAAGTTACAGGACTGGGAGGCAGCAGCATACTGACCCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1462 GGATGCAGCATATCGGGTCAGAAGATAGCCAATGGTGTCGTGCTGGATGTGCTTAGCATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1463 GAGACTGGAGTAGAGATCCACCACTGGTTCAAATGCACCCAGCACGCAGTAGATCCGAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1464 AAGTAGCAATTTGAACTGAGCATTGGATGGGCTGTGGGTTAAGCCTTCTTCCAGCAGAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1465 CAGGGCCTGCCAGACCGCAGTCTCCTCACCTGCTTCTCTCCATACATCAATGAGCACATG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1466 AACAGCGAGCAGGCAGTAATAGTCTGAGAACTGCAACTCTGTCTTCAAACAAGAGCGCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1467 AAACTCCAGTCCGTGCTGGTACCTTAACATCAGTTCTTTGACCACATCCAGCTTCTGACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1468 CTTATCCATGCTGTGGTACAAGCCAAGGAGCCGTGTCAGCTGCACAACACACAGATGCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1469 CTGCAGGCCTCGGATGTCGGCCGGCAGGGCAAGCTTATCCTCTGTCGGCGTCGACAATGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1470 AACAACTCCAAGGAGCTGGTTAATGAATTGTGTGCACTGGGCGGCAGGCAAGAGGTCAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1471 GAACACCTTCAGGTCTGTGAAGCAGCATGGCTTATCCCCGAACTTCTTGAAATACTGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1472 CATTAACTCTTCAGGGTCACCCAGCTTGTATTCGTCATTACAGCCTTGGCTCCGCAAGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1473 CCTGATGAGCTCCAGCTTAGCTAGGTGTGGGCCTCGGACATGTCGAGAGCTTTGTGATGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1474 CTCTGTTATCCTGTCCTCTATAAACTTCACAGCATCTTCTGCAGAGCAGTGTACTTCCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1475 TTCTAAGGAGTGTTCCCCCTCAGCAGGCGGCGTCCAGGCTTCCTCAATCAGTCGAAAGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1476 AGAATCGAAATAAGTCAGATAGAACTGCCAGTCATCTGAGTTTTTCAGAAGGAGGCGTCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1477 GGAAAGGGCGTTGCACTCCGGCCACTTGCTCAGCTTCTTGTACATGGCCATGCATTTGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1478 TTCCCGACTCTGAATTTCACTTGTCAACTTCTCTCCTAATTTTCCTCTAATGACATCCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1479 GGCTTCCTGGTACTTTCCCAAGCGCTCCAGAATCATGTAATAAAGTTCAACCTCAGCTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1480 AGCCTCTATCTTGTCCTCCTTCACCATCTTCTCTACCATTCTCTCCGCCAGGGGCAGAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1481 CATGGTTTTGGAGAGGTTCTCATCCCGTGCGGATATAGATTGCATGATCAAGCTCATCAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1482 TGACCAAAAGTAGTAAGGGTTTTTGGGGACAATCTTATACAGAGCCATGCCAGCCTGCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1483 CATCTTCTTGTACTCGCCCACTCTGGCATAGGCCATGAAGAGGTGAGAGTGGTACTCCTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1484 GCTGTTGGGAACTTTCTTCACAGCCGCCTCATAGAGCTTTGTGACTAACTCCGGCCGGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1485 CATCTCTCGGTAGAGAATCGTCAGGGCCTGCAGGGAGTTGTCATCTGTGGGCTCAAGGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1486 AGCCACCTCCTGAGCCAAGGTGAAAGCTTCTTCCTGCTTGCCAGTTCTCTGTAAACCAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1487 GGCCTTGAGAACCTTTGCACAGTGAAGATCTTTGTGTTTCTTCAACAGTTTATCAGCTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1488 CTGAATTGCCATTTTATTATTTCCATTATCAAGATAATCGTAAATGGGCCGGAGGCGCCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1489 GTCGTTAGGGTCCTGCACATGGCCCCGCGTCGCCATGATGACAAGCGCAGAACCTCAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1490 >comp49_c0_seq1 len=209 path=[116867:0-113 116241:114-208]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1491 CATCATGAGTGGTCACTAACTTGATCTTTTCATCTAAGATAACCTGGGTTTCTGTAGTAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1492 CTTAAGGGTTCAGGGGCCACACTGGGGATGCACGTCCAGGGCCATTTTTGGGGAGCAGGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1493 GTGTTTTAGAGGCACTAGAACCAGCTAATTTGCTTTGACTGCACAAGCAATGAGGAAGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1494 CAGAGAAGCTTAAGACAGTTTCTAAATAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1495 >comp49_c1_seq1 len=341 path=[112887:0-340]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1496 AGATTCTACTGGGCCCTACTCTTGCTAAGATGCAATAAGGAAGGGATTGCTCACTATGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1497 ACAAATTCCTTAGTTACAGAAACCCAACATAAGCATTTCTTTCTTACCTCTATCCTCCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1498 CACCCCTAAGACTCTACAAAGACAGAGCAAAGGAAGGACTTTTGCTTTCAATAATTAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1499 ACTTGCTTCTGCCAAAACGGAGGGACAAAGCAGGTTTCCAGTCTCAGCAATGCACTCTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1500 CTGTTCTGGGCCGTCTCTTGTTGTAACTCTGACACTGACTTACAAACACAGAGTATGCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1501 GAAGTAAAGAAGGAAGTAAGCATGTGGCGCTTACAGTGGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1502 >comp49_c2_seq1 len=409 path=[113331:0-121 113453:122-126 117458:127-408]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1503 AGGCCGTATGACAGAGGACATATTCTCCCCTAATACTACAAAACACACAATTAAATATCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1504 GCTTGTCATGGTCCTGTGGGATTGTTTCCACACATTAACAGCAACACAACTCAATATACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1505 TGCATCAGAGCCTCTATGCAAGTCTGTATGATGTCAACTACAGTCATGCTCCACAGGCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1506 TGATTGACTGCACTGGTCCCTACAGCCTGGGTATGTAGCATGTAGGTCTGAGTAAGTGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1507 CAGTACGATGGCCATGCAACAGCACAGTGCACAGCAGGCATGTCCCTGGTGTCAAGTGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1508 ACATAGAGATAGCTAGGTCTTACGGCTTAAGAACAGGAGAATCTAGCCAAATAAACAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1509 TCATTTTAGCTTACGTACTAAATACTGCCAGTTCAGAAAGGAAAGGTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1510 >comp49_c3_seq1 len=952 path=[111640:0-951]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1511 GTGCCGGAGACCAGGCCACAGACCAGAGAGACAACAGCAGGAAGAGGGAAGCATGCCCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1512 GTCACCAAGGAGCTCTCTGGCAGGCCTTCCATGGCTGCTAGGTGCAGAGAAGTTCTGGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1513 TCCACACAGCCGCTGGGGTCCCGGGGTGCAGGCCTATCCCCAGGGAGCTAAGGCAGGGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1514 GGTCCTTTGAGTGCCATGTCCATCCAGACTTTTGTCCTGAGACAGAACCATGTCACAGGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1515 TGGAAAGGTACAACCACTGCCTGTGAGGGTCTATGAAGAGTAGAGCTATTCATGTGCTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1516 CTCATCTGTGGGTGGGTTAAATGGGAGCAAAAGCCAAGAGGTGTCTAACTGTGCGCCAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1517 AGCCGTGCGTTAGGACGGGAAAGGACAAACAGAACCCCAGAAATAAGGACAACAAAATGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1518 ACAGAGGAAAAGAAAAGTCTAGCAAAATTCAGTGGACTCCACCACAAACAGAGGCATTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1519 GGCTGCTAGTTTGGGAATGTGACAATTTCAGACAAACAAAAGCTACCTCTGTTTCCTGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1520 TATCCCCTGACTCTCCTCCAAGTCACAAAGTTCAACTACTGAGAAAACTGAGGCTGTGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1521 TATCACGCTGAAGGCTTGTGCTTCTAAACCGCATTATTACATAGAAAGTGAGCAGGAGTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1522 ACCTCGGCAGCGGCAGCGCAGAAGTAACACCGGGTGAAAACAAACCACTCTGAACAACCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1523 AGGCATTTTAAAGAGCTTCTGGGAAGACAGCAGGGCCACGAGAAAATAGTGGTGCACGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1524 CATTTCTAGTCTAGCTGGCTAACTCAGCTCGGTGTCTTTGAGGGTTAAAGATCTGACTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1525 TGCTGGGCACAAACTGATGCATAGTACTTTATGGTGCCTTGAGATATTTCTAACTTGAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1526 CCCTGGGCTGCAACCCAAAACTGAGCCAAGTACAAGTTATCATCGTGTGCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1527 >comp49_c4_seq1 len=252 path=[115726:0-251]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1528 AATTTCTGTACCTTTCAGAAATTTAATGGAAAGGATTCCAAACTGGTCTCAGTTTTCAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1529 GGTCTACTTGTTCTGGGTGTCTTAAAGATATGCATTTCTTAGTGCATTTCTGCGGGAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1530 GTGTTGCTTAAATTGGGATATTTTTGTTACTTTGGAAATTTTTTACTAGATAGAAATTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1531 TATATGTCTTTTCCTTTCCAAAATTTAGTACTCATTTCTGATTTAATTGAAAGCAGCTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1532 GCTTGACATTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1533 >comp49_c5_seq1 len=205 path=[116571:0-204]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1534 ACGAAGGAAATGCTTAGGAGTATATGAGGACCTTTGTAGATGAGATTGTGTAGTCAGGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1535 GTCCTAGACACTGTCCTCTCCCCTTGTCCATTTACTACTTTGATTATGAACCAAAGTGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1536 GGGGGACATAACTGCATGGTTCCAAGTGTTGTTGACCACATTTAAGAACAGGTTGCTTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1537 ATATACGGAAGCCCAGGTAACCCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1538 >comp49_c6_seq1 len=574 path=[110610:0-20 110631:21-22 117435:23-44 110655:45-99 110710:100-100 110059:101-264 110223:265-573]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1539 CTTAGGGGTGTTGGAGGATAGAGCCATTGCAGACCTTTTGGGTGGTCCCTCCAGATGAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1540 GGCAGAGATGTTGTGAGCAGTGTACCTCTCCTCCCCTTGGGGCACCACACAGTCACTCGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1541 GGCATCACCAAAGGTGTGAAGGAGGACTTCCGCCTGGCCATGGAGCGCCAGGTCTCCCGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1542 TGTGGTGAGAACCTGATGGCGGTACTACATCGCTTCTGCATTAATGAGAAGATCTTGCTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1543 CTGCAGACTCTGACCTGATAGACCTCCTGGCCACCAGCGGCTCAGCCATGACAAGCGCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1544 CCAGACCAGGGCTGATGAAGAAGAAAAACACCAAGTTCTAACTCCCTTAGTTGCTTAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1545 GTCAATCCGAAGAGTATAGGAAGTTATTTCTATTTTTAAGACTTCAGGTTTTTTTAGTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1546 GTACAAAATAAGATTCAATCCATTTTGTAAATAAAAACCCGAAAGATTTGAAGTTTTAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1547 AAAAAACTTATTTTTAGTTTCAAGTAGGGTACATTTGTCTTCTATTTTTCTAATCATGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1548 AAAGGGGCAAAAATCCAACACAATTAAATGCAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1549 >comp49_c6_seq2 len=799 path=[113782:0-324 110710:325-325 110059:326-489 110223:490-798]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1550 GAGAGGCTCCTGAAGGTGGAACCTAAAGCTGCCCAAGGCACTGCATTGTGTGAGCTTCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1551 GAGTTCAGAGGCAAAGCAGGTGACACTTCACTTACCATTTGGCTGTGTGAAATGACCCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1552 TCTAGGACAGGAAAGATATCTGCCTAGTATGGAGACTGAGACGAATGGTCAGGAATGGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1553 ATCTGGTTGCAGCTTCTCTTTTTAAGTTTGGTTTAAATGCGTGACTATACTTAGCTATGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1554 GGCAGGCTGATTCCTACCCAGGTAACACTAGGTTGTGGTGCTGCTGTTAACCGTGGTCTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1555 TTCTGTTTCCCTTTCGCTGACCTCAGGCACCACACAGTCACTCGAGGCATCACCAAAGGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1556 GTGAAGGAGGACTTCCGCCTGGCCATGGAGCGCCAGGTCTCCCGCTGTGGTGAGAACCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1557 ATGGCGGTACTACATCGCTTCTGCATTAATGAGAAGATCTTGCTCCTGCAGACTCTGACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1558 TGATAGACCTCCTGGCCACCAGCGGCTCAGCCATGACAAGCGCTGCCAGACCAGGGCTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1559 TGAAGAAGAAAAACACCAAGTTCTAACTCCCTTAGTTGCTTAAAAGTCAATCCGAAGAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1560 ATAGGAAGTTATTTCTATTTTTAAGACTTCAGGTTTTTTTAGTTTGTACAAAATAAGATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1561 CAATCCATTTTGTAAATAAAAACCCGAAAGATTTGAAGTTTTAAAAAAAAACTTATTTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1562 AGTTTCAAGTAGGGTACATTTGTCTTCTATTTTTCTAATCATGGCAAAGGGGCAAAAATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1563 CAACACAATTAAATGCAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1564 >comp49_c6_seq3 len=2514 path=[108018:0-236 108255:237-1203 109222:1204-1651 109670:1652-2040 110059:2041-2204 110223:2205-2513]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1565 CAGTGGCCACCTGGGGGTTGGCGGCGCCCTAGTGTCGCCTACTGGAAGGGCAAAAACCCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1566 GGACCATGTCGGCCCAGGGCGACTGTGAGTTTCTGGTGCAGCGAGCCCGGGAACTAGTGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1567 CCCAGGACCTGTGGGCAGCCAAGGCATGGCTGATCACGGCCCGCAGCCTCTACCCGGCCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1568 ACTTCAACATCCAGTATGAAATGTACACCATCGAACGGAATGCCGAGAGGACTGCCACCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1569 CAGGGAGGTTGCTGTATGACATGTTTGTGAATTTCCCGGACCAGCCGGTGGTATGGAGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1570 AAATCAGCATCATCACGTCAGCATTGAGGAACGACTCACAAGATAAGCAGACCCAGTTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1571 TACGGAGTTTATTTGAAACCCTTCCCGGTCGGGTCCAGTGTGAAATGTTGTTGAAGGTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1572 CAGAGCAATGCTTCAACACGCTGGAACGATCAGAAATGTTGCTGCTGCTGCTGAGGCGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1573 TCCCTGAGACAGTGGTGCAACACGGGGTTGGCCTCGGGGAGGCCCTGCTGGAAGCTGAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1574 CCATTGAAGAACAAGACTCTCCTGTTAACTGCTTTAGAAAGCTATTTGTTTGTGATGTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1575 TTCCTCTAATAATCAACAACCATGATGTCCGCTTGCCCGCCAATCTCTTATATAAATACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1576 TGAACAAAGCAGCTGAATTTTACATCAACTATGTCACTCGGTCCACACAGTCAGAAAATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1577 AGCATCAAGGTGCACAGGATACATCTGATTTAATGTCGCCTAGCAAGCGTAGCTCTCAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1578 AGTACATAATAGAAGGACTGACTGAGAAATCATCCCACATCGTCGACCCCTGGGAGAGGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1579 TGTTTAAGATTCTGAATGTTGTTGGAATGAGATGCGAATGGCAGATGGATAAAGGGAGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1580 GAAGCTGCAGTGACCTGCTGCACCGGATGAAGGAGCTCTGCAGATACATGAACAGCTTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1581 ACAGCGAAGCTCACAACAACTATAAAAACCAAGTGCTCTACTCCACGATGCTGGTGTTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1582 TCAAGAGTGCGTTCCAGTACGTCAGCAGCATACAGCCATCTCTCTTCCAAGGTCCTAACG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1583 CCCCAAGCCAGGTTCCACTAATTCTTCTGGAAGATGTGGCCAATGTGTATGGTGATGTAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1584 AAATTGATCGCAGTAAACACATACACAAGAAGAGGAAGCTAGCTGAGGGAAGAGAAAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1585 CCATGAGTTCAGATGATGAAGAGTGTTCAGCGAAAGGCAGAAACCGGCACATTGTTGTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1586 GCAAAGCTGACCTCAGCAACTCCATCGAAGTACTGGAGAGCTTCAAACTGGCCAGGGAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1587 GCTGGGAGTTACTCTACTCTCTGGAATTCCTTGACAAAGAATTTACAAGAATTTGCTTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1588 CTTGGAAGACAGACACCTGGCTGTGGCTAAGAATCTTCCTCACAGATATGATCATCTACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1589 AGGGTCAATATAAGAAGGCCATAGCCAGTCTGCATCACTTAGCAGCTCTGCAAGGATCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1590 TTTCTCAGCCACAGATCACAGGACAGGGGACTTTAGAACACCAGAGGGCGCTCATCCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1591 TGGCAACGTGTCACTTTGCTCTGGGGGAGTACAGAATGACGTGCGAGAAAGTCCTAGATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1592 TGATGTGTTACATGGTGCTCCCCATACAAGATGGCGGGAAGCCACAGGAAGAGCCGTCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1593 AAGTAAAGCCCAAGTGTAGAAAAGGTTTGGATCTGAAGCTTCTGCCCTGTACCAGTAAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1594 CTATCATGCCATACTGCCTGCACTTGATGCTGGCCTGCTTTAAGCTGAGAGCTTTTACAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1595 ACAGCAGAGACGACATGGCACTGGGCCATGTGATTGTACTGCTCCAGCAGGAGTGGCCAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1596 GGGGAGAGAACCTTTTCCTGAAAGCCATCAGTAAGATTTGCCAGCAAGGAAATTTCCAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1597 ATGAGAACTTCTTCAGCTATGTTACAAACATTGATATGCTGGAGGAATTTGCTTATTTAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1598 GAACCCAAGAAGGAGGGAAGATTCATCTGGAATTACTCCCAAATCAAGGAATGCTGATCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1599 AGCACCACACAGTCACTCGAGGCATCACCAAAGGTGTGAAGGAGGACTTCCGCCTGGCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1600 TGGAGCGCCAGGTCTCCCGCTGTGGTGAGAACCTGATGGCGGTACTACATCGCTTCTGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1601 TTAATGAGAAGATCTTGCTCCTGCAGACTCTGACCTGATAGACCTCCTGGCCACCAGCGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1602 CTCAGCCATGACAAGCGCTGCCAGACCAGGGCTGATGAAGAAGAAAAACACCAAGTTCTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1603 ACTCCCTTAGTTGCTTAAAAGTCAATCCGAAGAGTATAGGAAGTTATTTCTATTTTTAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1604 ACTTCAGGTTTTTTTAGTTTGTACAAAATAAGATTCAATCCATTTTGTAAATAAAAACCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1605 GAAAGATTTGAAGTTTTAAAAAAAAACTTATTTTTAGTTTCAAGTAGGGTACATTTGTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1606 TCTATTTTTCTAATCATGGCAAAGGGGCAAAAATCCAACACAATTAAATGCAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1607 >comp49_c6_seq4 len=2592 path=[108018:0-236 108255:237-1203 109222:1204-1651 109670:1652-2040 117435:2041-2062 110655:2063-2117 110710:2118-2118 110059:2119-2282 110223:2283-2591]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1608 CAGTGGCCACCTGGGGGTTGGCGGCGCCCTAGTGTCGCCTACTGGAAGGGCAAAAACCCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1609 GGACCATGTCGGCCCAGGGCGACTGTGAGTTTCTGGTGCAGCGAGCCCGGGAACTAGTGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1610 CCCAGGACCTGTGGGCAGCCAAGGCATGGCTGATCACGGCCCGCAGCCTCTACCCGGCCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1611 ACTTCAACATCCAGTATGAAATGTACACCATCGAACGGAATGCCGAGAGGACTGCCACCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1612 CAGGGAGGTTGCTGTATGACATGTTTGTGAATTTCCCGGACCAGCCGGTGGTATGGAGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1613 AAATCAGCATCATCACGTCAGCATTGAGGAACGACTCACAAGATAAGCAGACCCAGTTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1614 TACGGAGTTTATTTGAAACCCTTCCCGGTCGGGTCCAGTGTGAAATGTTGTTGAAGGTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1615 CAGAGCAATGCTTCAACACGCTGGAACGATCAGAAATGTTGCTGCTGCTGCTGAGGCGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1616 TCCCTGAGACAGTGGTGCAACACGGGGTTGGCCTCGGGGAGGCCCTGCTGGAAGCTGAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1617 CCATTGAAGAACAAGACTCTCCTGTTAACTGCTTTAGAAAGCTATTTGTTTGTGATGTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1618 TTCCTCTAATAATCAACAACCATGATGTCCGCTTGCCCGCCAATCTCTTATATAAATACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1619 TGAACAAAGCAGCTGAATTTTACATCAACTATGTCACTCGGTCCACACAGTCAGAAAATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1620 AGCATCAAGGTGCACAGGATACATCTGATTTAATGTCGCCTAGCAAGCGTAGCTCTCAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1621 AGTACATAATAGAAGGACTGACTGAGAAATCATCCCACATCGTCGACCCCTGGGAGAGGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1622 TGTTTAAGATTCTGAATGTTGTTGGAATGAGATGCGAATGGCAGATGGATAAAGGGAGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1623 GAAGCTGCAGTGACCTGCTGCACCGGATGAAGGAGCTCTGCAGATACATGAACAGCTTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1624 ACAGCGAAGCTCACAACAACTATAAAAACCAAGTGCTCTACTCCACGATGCTGGTGTTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1625 TCAAGAGTGCGTTCCAGTACGTCAGCAGCATACAGCCATCTCTCTTCCAAGGTCCTAACG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1626 CCCCAAGCCAGGTTCCACTAATTCTTCTGGAAGATGTGGCCAATGTGTATGGTGATGTAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1627 AAATTGATCGCAGTAAACACATACACAAGAAGAGGAAGCTAGCTGAGGGAAGAGAAAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1628 CCATGAGTTCAGATGATGAAGAGTGTTCAGCGAAAGGCAGAAACCGGCACATTGTTGTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1629 GCAAAGCTGACCTCAGCAACTCCATCGAAGTACTGGAGAGCTTCAAACTGGCCAGGGAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1630 GCTGGGAGTTACTCTACTCTCTGGAATTCCTTGACAAAGAATTTACAAGAATTTGCTTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1631 CTTGGAAGACAGACACCTGGCTGTGGCTAAGAATCTTCCTCACAGATATGATCATCTACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1632 AGGGTCAATATAAGAAGGCCATAGCCAGTCTGCATCACTTAGCAGCTCTGCAAGGATCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1633 TTTCTCAGCCACAGATCACAGGACAGGGGACTTTAGAACACCAGAGGGCGCTCATCCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1634 TGGCAACGTGTCACTTTGCTCTGGGGGAGTACAGAATGACGTGCGAGAAAGTCCTAGATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1635 TGATGTGTTACATGGTGCTCCCCATACAAGATGGCGGGAAGCCACAGGAAGAGCCGTCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1636 AAGTAAAGCCCAAGTGTAGAAAAGGTTTGGATCTGAAGCTTCTGCCCTGTACCAGTAAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1637 CTATCATGCCATACTGCCTGCACTTGATGCTGGCCTGCTTTAAGCTGAGAGCTTTTACAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1638 ACAGCAGAGACGACATGGCACTGGGCCATGTGATTGTACTGCTCCAGCAGGAGTGGCCAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1639 GGGGAGAGAACCTTTTCCTGAAAGCCATCAGTAAGATTTGCCAGCAAGGAAATTTCCAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1640 ATGAGAACTTCTTCAGCTATGTTACAAACATTGATATGCTGGAGGAATTTGCTTATTTAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1641 GAACCCAAGAAGGAGGGAAGATTCATCTGGAATTACTCCCAAATCAAGGAATGCTGATCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1642 ACCATTGCAGACCTTTTGGGTGGTCCCTCCAGATGAGTGGCAGAGATGTTGTGAGCAGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1643 TACCTCTCCTCCCCTTGGGGCACCACACAGTCACTCGAGGCATCACCAAAGGTGTGAAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1644 AGGACTTCCGCCTGGCCATGGAGCGCCAGGTCTCCCGCTGTGGTGAGAACCTGATGGCGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1645 TACTACATCGCTTCTGCATTAATGAGAAGATCTTGCTCCTGCAGACTCTGACCTGATAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1646 CCTCCTGGCCACCAGCGGCTCAGCCATGACAAGCGCTGCCAGACCAGGGCTGATGAAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1647 GAAAAACACCAAGTTCTAACTCCCTTAGTTGCTTAAAAGTCAATCCGAAGAGTATAGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1648 GTTATTTCTATTTTTAAGACTTCAGGTTTTTTTAGTTTGTACAAAATAAGATTCAATCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1649 TTTTGTAAATAAAAACCCGAAAGATTTGAAGTTTTAAAAAAAAACTTATTTTTAGTTTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1650 AGTAGGGTACATTTGTCTTCTATTTTTCTAATCATGGCAAAGGGGCAAAAATCCAACACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1651 ATTAAATGCAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1652 >comp50_c0_seq1 len=298 path=[133615:0-297]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1653 GACTTGTTCTAAGCAAGGGTCTGTGAGGTGGGGAAAGATAGCACTGTTGTAGTTAACACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1654 AATGTTCTTATTGTTCACTAAGCTCTGCTCACTTGTAGAAATGTTAACCAAGAACACCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1655 AAATAGTTGCTCAGCAGCCAGAAGCCAGGAGTTCCTCACCTGTGCCTTTTCGACTTTGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1656 AACATCTGCCTTGAAATTTTGAGAAACAACATTCTTTGTCCTTCCTGCCCGCCTTAGATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1657 TTTGTCTGTTCTTCTACACTGTTGTGAATCACACCTTTGTACACTGAAGTCAATGTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1658 >comp50_c1_seq1 len=3918 path=[124800:0-145 124946:146-1346 126147:1347-1438 126239:1439-1579 126380:1580-2915 127716:2916-3682 131163:3683-3917]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1659 CGGCGTGTGACGCAGTCAGGCCTCTGCGCGCTGCGCCCGAAGCGGCGGTCGGTGGCAGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1660 GCGGCGGCGACGACGGTTTTTCTGGAGGCCGCGCGGTGAGCGGCGGGTGACGGGCGGACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1661 TGGGCTCTCACTCCAGACGCACCGCTCTTTCTGAAGCAAACACTTGCTTTGAAGATGTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1662 AACAAATCATTTGGAACCCCCTTTGGGGGTAGTACAGGGGGCTTTGGCACAACGTCAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1663 TTTGGGCAAAATACTGGCTTTGGTACGACTAGTGGAGGAGCATTTGGAACATCTGCATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1664 GGTTCTAGCAACAATACTGGAGGCTTATTTGGAAATTCACAGACCAAACCAGGAGGATTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1665 TTTGGTACCAGTTCATTTAGCCAGCCAGCAACCTCCACAAGCACTGGGTTTGGGTTTGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1666 ACATCAACAGGAACATCAAATAGCTTATTTGGAACTGCAAGTACCGGGACCAGTCTTTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1667 TCATCCCAGAACAATGCATTTGCACAAAATAAACCAACTGGCTTTGGGAATTTTGGAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1668 AGTACTAGCAGTGGAGGACTCTTTGGAACTACAAATACCACCTCTAATCCTTTTGGTAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1669 ACATCTGGCTCCCTTTTTGGGCCAAGTAGTTTTACAGCAGCACCTACAGGAACTACCATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1670 AAATTTAATCCTCCCACTGGTACAGATACTATGGTCAAAGCTGGAGTTAGCACTAACATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1671 AGTACAAAGCATCAGTGTATTACTGCTATGAAAGAATATGAAAGCAAGTCATTAGAGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1672 CTACGTTTGGAGGATTATCAGGCTAACCGGAAAGGCCCACAGAACCAAGTGGGAGGAGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1673 ACCACGGCTGGCTTATTTGGGTCTTCTCCAGCAACTTCCAGTGCAACAGGGCTCTTCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1674 TCCTCCACCACTAATTCAGCCTTTTCATATGGTCAGAACAAAACTGCCTTTGGAACTAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1675 ACAACTGGATTTGGAACAAATCCAGGTGGTCTCTTTGGCCAACAGAATCAACAGACTACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1676 AGTCTCTTCAGCAAACCATTTGGCCAGGCTACAACCACCCCGAATACTGGCTTTTCCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1677 GGTAATACCAGCACCCTTGGACAGCCAAGCACCAATACTATGGGCCTATTTGGAGTAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1678 CAAGCCTCACAACCAGGAGGTCTTTTTGGGACAGCTACAAACACCAGCACTGGGACAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1679 TTTGGGACAGGAACAGGTCTCTTTGGGCAGCCCAATACTGGATTTGGTGCAGTTGGTTCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1680 ACCCTGTTTGGCAATAACAAGCTTACAACTTTTGGAACCAGCACAACCAGTGCTCCTTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1681 TTTGGTACAACCAGTGGCGGGCTCTTCGGGTTTGGCACAAATAACAGTGGGAGCAGTATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1682 TTTGGAAGTAAGCCAGCAGCTGGAACTTTGGGAACTGGACTTGGTACAGGATTTGGAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1683 GCTCTTGGTGCTGGACAGGCATCTTTGTTTGGAAACAACCAACCTAAGATTGGAGGGCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1684 CTTGGTACAGGAGCCTTTGGGGCCCCTGGATTTAATACTTCGACAGCCATTTTGGGCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1685 GGCGCCCCCCAGGCCCCAGTAGCTTTGACAGATCCAAATGCTTCTGCTGCCCAGCAGGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1686 GTTCTCCAGCAGCACCTCAATAGCCTAACATACTCACCCTTTGGAGACTCCCCCCTCTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1687 CGGAATCCTATGTCAGATCCTAAGAAGAAAGAAGAGAGACTGAAACCAACCAATCCAGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1688 GCTCAGAAAGCTCTTACAACACCTACTCATTATAAACTTACACCTCGCCCTGCTACCAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1689 GTCAGGCCAAAGGCTTTGCAAACAACAGGCACAGCCAAATCACATCTCTTTGATGGGCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1690 GATGACGATGAACCATCTCTAGCCAACGGAGCATTCATGCCTAAAAAGAGCATCAAGAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1691 TTGGTTTTGAAAAATCTCAACAATAGCAATCTCTTTTCTCCTGTTAATCATGATTCAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1692 GATCTAGCTTCACCCTCTGAGTATCCAGAAAATGGAGAAAGATTTAGCTTCCTGAGCAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1693 CCTGTTGATGAGAACAATCAGCAGGATGGAGAAGATGACTCTCTTGTATCACGATTTTAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1694 ACTAATCCTATTGCCAAACCCATTCCACAAACTCCAGAGAGTGTTGGAAACAAAAATAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1695 AGTAGCAGCAATGTGGAAGATACCATTGTTGCCTTGAACATGCGTGCTGCTTTGCGCAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1696 GGATTGGAAGGAAGCAGTGAAGAGACGTCATTCCATGATGAGTCATTGCAAGATGACCGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1697 GAAGAGATAGAAAATAATGCTTACCACATACACCCAGCAGGCATTGTTCTCACAAAAGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1698 GGTTATTACACTATCCCATCTATGGATGACCTTGCTAAAATTACCAACGAGAAGGGAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1699 TGCATTGTTTCTGACTTCACCATTGGTCGTAAAGGATATGGCTCAATCTATTTTGAAGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1700 GATGTGAATTTGACAAATCTAAATTTGGATGATATTGTGCATATCCGAAGGAAAGAAGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1701 ATTGTCTATGTAGATGATAACCAAAAGCCACCTGTGGGTGAAGGGCTAAATAGGAAGGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1702 GAAGTTACTTTGGATGGAGTTTGGCCAACAGATAAAACATCCCGGTGTTTAATAAAGAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1703 CCAGATCGACTTGCTGATATCAACTATGAGGGGAGATTAGAAGCAGTCTCAAGAAAGCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1704 GGGGCCCAATTCAAGGAGTATCGGCCTGAAACTGGTTCTTGGGTATTTAAGGTCTCCCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1705 TTTTCCAAGTATGGCCTTCAGGATTCTGATGAAGAGGAGGAGGAACACCCACCCAAAACG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1706 ACTTCAAAGAAGCTGAAGACTGCCCCTTTGCCCCCTGCAGGCCAGGCAACCACTTTCCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1707 ATGACTCTTAATGGCAAGCCTGCACCCCCACCTCAGAGCCAGAGCCCAGAAGTGGAGCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1708 TTAGGCAGGGTTGTGGAACTGGACAGCGACATGGTAGATATCACCCAGGAGCCAGTTCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1709 GATTCTGTGTTAGAAGAGAGTGTGCCCGAGGATCAGGAGCCTGTGTCTGCTTCAACGCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1710 ATTGCATCTTCACTGGGAATTAATCCACATGTTTTACAGATCATGAAAGCATCATTGCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1711 GTTGACGAAGAAGATGTAGATGCCATGGATCAACGCTTTGGTCACATCCCTTCCAAAGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1712 GAGACTGTCCAGGAAATCTGTTCTCCTAGACTCCCCATTTCAGCCTCCCACTCATCAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1713 TCCCGCTCCATAGTTGGTGGGTTGCTGCAATCAAAATTTGCAAGTGGAACTTTTCTTTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1714 CCAAGTGCCTCCGTGCAAGAATGTCGCACTCCCAGGACATCATCTCGCATGAACATCCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1715 TCCACATCCCCCTGGTCTGTCCCTCTGCCCCTGGCCACTGTGTTCACAGTGCCCAGCCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1716 GCCCCTGAGGTTCAGCTAAAAACAGTGGGGATACGAAGGCAACCAGGCCTAGTCCCTCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1717 GAAAAATCCATTACATATGGCAAGGGGAAGCTCTTGATGGACATGGCCCTATTCATGGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1718 CGTTCATTTCGGGTTGGTTGGGGTCCCAACTGGACTCTTGCTAATAGTGGAGAACAACTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1719 CATGGCTCCCATGAACTGGAAAATCATCAGGTTGCCGATTCTATGGAATATGGATTCCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1720 CCCAATCCAGTAGCTGTTAAATCGTGAGTTATGTTTATTGATGCTTTGGGGGAATGTCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1721 CATTATAGTTGGGGCTGTTCTGTTATCAAGAAACCCAAGGTCAGCACCCTGCTTTTTGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1722 CTCTCTATATAAATTTTTAACCCAAGTATAAGTATTTCATATGTTATGTACATAGTATCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1723 TATATGTTCCTATGTAGTCCCTACAATTAAGTCCTCTGGTAATTATCATACAAAATGTAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1724 TGCATTTACACCAAATAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1725 >comp50_c1_seq2 len=5677 path=[124800:0-145 124946:146-1346 126147:1347-1438 126380:1439-2774 127716:2775-3541 128483:3542-4072 129014:4073-4248 129190:4249-4259 129201:4260-4909 129851:4910-5676]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1726 CGGCGTGTGACGCAGTCAGGCCTCTGCGCGCTGCGCCCGAAGCGGCGGTCGGTGGCAGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1727 GCGGCGGCGACGACGGTTTTTCTGGAGGCCGCGCGGTGAGCGGCGGGTGACGGGCGGACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1728 TGGGCTCTCACTCCAGACGCACCGCTCTTTCTGAAGCAAACACTTGCTTTGAAGATGTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1729 AACAAATCATTTGGAACCCCCTTTGGGGGTAGTACAGGGGGCTTTGGCACAACGTCAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1730 TTTGGGCAAAATACTGGCTTTGGTACGACTAGTGGAGGAGCATTTGGAACATCTGCATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1731 GGTTCTAGCAACAATACTGGAGGCTTATTTGGAAATTCACAGACCAAACCAGGAGGATTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1732 TTTGGTACCAGTTCATTTAGCCAGCCAGCAACCTCCACAAGCACTGGGTTTGGGTTTGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1733 ACATCAACAGGAACATCAAATAGCTTATTTGGAACTGCAAGTACCGGGACCAGTCTTTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1734 TCATCCCAGAACAATGCATTTGCACAAAATAAACCAACTGGCTTTGGGAATTTTGGAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1735 AGTACTAGCAGTGGAGGACTCTTTGGAACTACAAATACCACCTCTAATCCTTTTGGTAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1736 ACATCTGGCTCCCTTTTTGGGCCAAGTAGTTTTACAGCAGCACCTACAGGAACTACCATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1737 AAATTTAATCCTCCCACTGGTACAGATACTATGGTCAAAGCTGGAGTTAGCACTAACATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1738 AGTACAAAGCATCAGTGTATTACTGCTATGAAAGAATATGAAAGCAAGTCATTAGAGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1739 CTACGTTTGGAGGATTATCAGGCTAACCGGAAAGGCCCACAGAACCAAGTGGGAGGAGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1740 ACCACGGCTGGCTTATTTGGGTCTTCTCCAGCAACTTCCAGTGCAACAGGGCTCTTCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1741 TCCTCCACCACTAATTCAGCCTTTTCATATGGTCAGAACAAAACTGCCTTTGGAACTAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1742 ACAACTGGATTTGGAACAAATCCAGGTGGTCTCTTTGGCCAACAGAATCAACAGACTACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1743 AGTCTCTTCAGCAAACCATTTGGCCAGGCTACAACCACCCCGAATACTGGCTTTTCCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1744 GGTAATACCAGCACCCTTGGACAGCCAAGCACCAATACTATGGGCCTATTTGGAGTAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1745 CAAGCCTCACAACCAGGAGGTCTTTTTGGGACAGCTACAAACACCAGCACTGGGACAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1746 TTTGGGACAGGAACAGGTCTCTTTGGGCAGCCCAATACTGGATTTGGTGCAGTTGGTTCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1747 ACCCTGTTTGGCAATAACAAGCTTACAACTTTTGGAACCAGCACAACCAGTGCTCCTTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1748 TTTGGTACAACCAGTGGCGGGCTCTTCGGGTTTGGCACAAATAACAGTGGGAGCAGTATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1749 TTTGGAAGTAAGCCAGCAGCTGGAACTTTGGGAACTGGACTTGGTACAGGATTTGGAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1750 GCTTTGACAGATCCAAATGCTTCTGCTGCCCAGCAGGCTGTTCTCCAGCAGCACCTCAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1751 AGCCTAACATACTCACCCTTTGGAGACTCCCCCCTCTTCCGGAATCCTATGTCAGATCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1752 AAGAAGAAAGAAGAGAGACTGAAACCAACCAATCCAGCTGCTCAGAAAGCTCTTACAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1753 CCTACTCATTATAAACTTACACCTCGCCCTGCTACCAGAGTCAGGCCAAAGGCTTTGCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1754 ACAACAGGCACAGCCAAATCACATCTCTTTGATGGGCTGGATGACGATGAACCATCTCTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1755 GCCAACGGAGCATTCATGCCTAAAAAGAGCATCAAGAAGTTGGTTTTGAAAAATCTCAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1756 AATAGCAATCTCTTTTCTCCTGTTAATCATGATTCAGAAGATCTAGCTTCACCCTCTGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1757 TATCCAGAAAATGGAGAAAGATTTAGCTTCCTGAGCAAACCTGTTGATGAGAACAATCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1758 CAGGATGGAGAAGATGACTCTCTTGTATCACGATTTTACACTAATCCTATTGCCAAACCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1759 ATTCCACAAACTCCAGAGAGTGTTGGAAACAAAAATAACAGTAGCAGCAATGTGGAAGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1760 ACCATTGTTGCCTTGAACATGCGTGCTGCTTTGCGCAATGGATTGGAAGGAAGCAGTGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1761 GAGACGTCATTCCATGATGAGTCATTGCAAGATGACCGAGAAGAGATAGAAAATAATGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1762 TACCACATACACCCAGCAGGCATTGTTCTCACAAAAGTTGGTTATTACACTATCCCATCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1763 ATGGATGACCTTGCTAAAATTACCAACGAGAAGGGAGAATGCATTGTTTCTGACTTCACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1764 ATTGGTCGTAAAGGATATGGCTCAATCTATTTTGAAGGAGATGTGAATTTGACAAATCTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1765 AATTTGGATGATATTGTGCATATCCGAAGGAAAGAAGTTATTGTCTATGTAGATGATAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1766 CAAAAGCCACCTGTGGGTGAAGGGCTAAATAGGAAGGCTGAAGTTACTTTGGATGGAGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1767 TGGCCAACAGATAAAACATCCCGGTGTTTAATAAAGAGTCCAGATCGACTTGCTGATATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1768 AACTATGAGGGGAGATTAGAAGCAGTCTCAAGAAAGCAAGGGGCCCAATTCAAGGAGTAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1769 CGGCCTGAAACTGGTTCTTGGGTATTTAAGGTCTCCCATTTTTCCAAGTATGGCCTTCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1770 GATTCTGATGAAGAGGAGGAGGAACACCCACCCAAAACGACTTCAAAGAAGCTGAAGACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1771 GCCCCTTTGCCCCCTGCAGGCCAGGCAACCACTTTCCAGATGACTCTTAATGGCAAGCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1772 GCACCCCCACCTCAGAGCCAGAGCCCAGAAGTGGAGCAGTTAGGCAGGGTTGTGGAACTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1773 GACAGCGACATGGTAGATATCACCCAGGAGCCAGTTCCAGATTCTGTGTTAGAAGAGAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1774 GTGCCCGAGGATCAGGAGCCTGTGTCTGCTTCAACGCATATTGCATCTTCACTGGGAATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1775 AATCCACATGTTTTACAGATCATGAAAGCATCATTGCTTGTTGACGAAGAAGATGTAGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1776 GCCATGGATCAACGCTTTGGTCACATCCCTTCCAAAGGAGAGACTGTCCAGGAAATCTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1777 TCTCCTAGACTCCCCATTTCAGCCTCCCACTCATCAAAATCCCGCTCCATAGTTGGTGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1778 TTGCTGCAATCAAAATTTGCAAGTGGAACTTTTCTTTCACCAAGTGCCTCCGTGCAAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1779 TGTCGCACTCCCAGGACATCATCTCGCATGAACATCCCATCCACATCCCCCTGGTCTGTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1780 CCTCTGCCCCTGGCCACTGTGTTCACAGTGCCCAGCCCAGCCCCTGAGGTTCAGCTAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1781 ACAGTGGGGATACGAAGGCAACCAGGCCTAGTCCCTCTTGAAAAATCCATTACATATGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1782 AAGGGGAAGCTCTTGATGGACATGGCCCTATTCATGGGACGTTCATTTCGGGTTGGTTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1783 GGTCCCAACTGGACTCTTGCTAATAGTGGAGAACAACTGCATGGCTCCCATGAACTGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1784 AATCATCAGGTTGCCGATTCTATGGAATATGGATTCCTGCCCAATCCAGTAGCTGTTAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1785 TCTCTATCTGAATCCCCATTCAAAGTTCATTTGGAAAAACTCGGCTTAAGACAGAGGAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1786 CTGGATGAAGATCTGCAGTTATACCAGACACCTCTAGAGCTCAAATTAAAACATAGCACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1787 GTCCATGTAGATGAGCTGTGTCCTCTCATTGTCCCCAACCCTGGGGTTTCAGTCATTCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1788 GATTATGCAGATTGGGTTAAGGACTCACCTGGAGATTTCCTGGAACTACCAATTGTGAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1789 CACTGGAGCCTGACATGGACATTATGTGAAGCCCTATGGGGCCACCTGAAGGAGCTTGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1790 GGCCAGCTGGATGAGCCCAGCGAATACATTCAGACTCTGGAGCGTAGAAGAGCTTTTTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1791 CGCTGGCTGTCACATACCGCTGCACCTCAGATTGAAGAGGAAGTCTCCTTAACCCGCAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1792 GACAGTCCCGTAGAGGCTGTCTTCAGCTACCTCACGGGCAGTAGGATTAGTGAGGCCTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1793 TGTCTGGCACAGCAGTCAGGTGATCATCGCCTTGCCCTTCTTCTGTCTCAGTTGGTGGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1794 AGCCAGTCAGTCCGGGAGCTGCTCACCATGCAGTTGGCCGATTGGCATCAGCTCCAGGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1795 GACTCCTTCATCCACGATGAGCGATTGCGCATATTTGCCCTGTTGGCTGGAAAACCGGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1796 TGGCAGCTCTCAGAGCAGAAACAAATCAATGTTTGCTCCCAGCTAGATTGGAAACGAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1797 CTTGCTATCCATCTTTGGTATTTGCTTCCGCCAACCGCCTCCATTTCCAGGGCTCTCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1798 ATGTATGAAGAAGCATTTCAGAATACTCCTGAGGGTGATAAATATGCCTGCTCCCCTCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1799 CCTTCTTACCTGGAGGGCTGCGGCTGTATGGTAGAGGAAGAAAAAGACTCCCGGAGACCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1800 CTTCAAGATGTTTGCTTTCATCTTCTAAAACTCTACAGTGACAGACATTATGAGCTCAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1801 CAGCTATTAGAACCTCGAAGCATAACTGCAGATCCTTTGGACTACCGCCTGAGCTGGCAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1802 CTTTGGGAAGTGCTACGTGCTCTTAACTATACCCATCTCTCAGAACAGTGTGAAGGTGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1803 CTACAGGCCAGTTATGCTGGCCAACTGGAAAGTGAAGGACTCTGGGAGTGGGCCATCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1804 GTCTTCCTACACATTGACAACTCGGGCATGCGTGAGAAGGCTGTTCGAGAGCTGCTGACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1805 AGGCACTGCCAACTGTCAGAGACCCCTGAGTCTTGGGCTAAGGAGGCGTTCCTCACACAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1806 AAGCTTTGTGTGCCTGCTGAGTGGATTCATGAGGCCAAAGCAGTTCGAGCACACATGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1807 TCCAATAAGCACTTGGAGGCCCTCTATTTATTTAAAGCTGGTCACTGGAACCGCTGCCAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1808 AAACTAGTCATTCGTCACCTAGCTTCTGATGCCATTATTAATGAGAACTATGACTACCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1809 AAAGGATTCTTAGAAGATCTGGCACCTCCAGAGCGCAGCAGCCTCATCCAGGACTGGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1810 ACATCTGGGCTCGTTTACCTGGATTATATTCGAGTGATTGAAATGCTCCACCGTATTCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1811 CAGGTGGATTGCTCAGGTTATGAACTAGAGCACTTACATACCAAAGTGACTTCACTGTGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1812 AATCGGATAGAACAGATTCCGTGTTACAATGCCAAGGATCGCCTGGCTCAATCAGATATG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1813 GCCAAGCGGGTAGCCAACTTACTGCGGGTAGTGCTGAGCCTTCAGCATGCTCCTGATGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1814 ACCTCCAACTCAACGCCAGACCCTCAGCGAGTCCCTTTGCGTCTTTTGGCTCCCCACATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1815 GGCAGGCTCCCCATGCCTGAGGACTACGCCTTGGAGGAACTGCGAGGCCTTACCCAGTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1816 TACCTTCGAGAACTGACTGTTGGGAGCCAGTGAGCTTGGCTCTTGCCACCACACTCATGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1817 CCACTCACACTCGCCACACCACAGTCCCCAGCACTGTTTTAGTTGACACTTTGCCAATCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1818 CTGGGAATCCTCCATTCCTTTCTGCTGCATCTTCTAGTTATTCAGGGGTTTTCCTAATAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1819 TGAGCATAGCCTACAATAGCTCATAAGGGCTTCTGGAACAACAACAAAGAAGACAGGTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1820 CCATTTATCAACCTCAAGACCTTTTTTTTTCTTTTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1821 >comp50_c1_seq3 len=3828 path=[124800:0-145 124946:146-1346 131552:1347-1397 126147:1398-1489 126380:1490-2825 127716:2826-3592 131163:3593-3827]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1822 CGGCGTGTGACGCAGTCAGGCCTCTGCGCGCTGCGCCCGAAGCGGCGGTCGGTGGCAGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1823 GCGGCGGCGACGACGGTTTTTCTGGAGGCCGCGCGGTGAGCGGCGGGTGACGGGCGGACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1824 TGGGCTCTCACTCCAGACGCACCGCTCTTTCTGAAGCAAACACTTGCTTTGAAGATGTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1825 AACAAATCATTTGGAACCCCCTTTGGGGGTAGTACAGGGGGCTTTGGCACAACGTCAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1826 TTTGGGCAAAATACTGGCTTTGGTACGACTAGTGGAGGAGCATTTGGAACATCTGCATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1827 GGTTCTAGCAACAATACTGGAGGCTTATTTGGAAATTCACAGACCAAACCAGGAGGATTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1828 TTTGGTACCAGTTCATTTAGCCAGCCAGCAACCTCCACAAGCACTGGGTTTGGGTTTGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1829 ACATCAACAGGAACATCAAATAGCTTATTTGGAACTGCAAGTACCGGGACCAGTCTTTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1830 TCATCCCAGAACAATGCATTTGCACAAAATAAACCAACTGGCTTTGGGAATTTTGGAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1831 AGTACTAGCAGTGGAGGACTCTTTGGAACTACAAATACCACCTCTAATCCTTTTGGTAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1832 ACATCTGGCTCCCTTTTTGGGCCAAGTAGTTTTACAGCAGCACCTACAGGAACTACCATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1833 AAATTTAATCCTCCCACTGGTACAGATACTATGGTCAAAGCTGGAGTTAGCACTAACATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1834 AGTACAAAGCATCAGTGTATTACTGCTATGAAAGAATATGAAAGCAAGTCATTAGAGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1835 CTACGTTTGGAGGATTATCAGGCTAACCGGAAAGGCCCACAGAACCAAGTGGGAGGAGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1836 ACCACGGCTGGCTTATTTGGGTCTTCTCCAGCAACTTCCAGTGCAACAGGGCTCTTCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1837 TCCTCCACCACTAATTCAGCCTTTTCATATGGTCAGAACAAAACTGCCTTTGGAACTAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1838 ACAACTGGATTTGGAACAAATCCAGGTGGTCTCTTTGGCCAACAGAATCAACAGACTACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1839 AGTCTCTTCAGCAAACCATTTGGCCAGGCTACAACCACCCCGAATACTGGCTTTTCCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1840 GGTAATACCAGCACCCTTGGACAGCCAAGCACCAATACTATGGGCCTATTTGGAGTAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1841 CAAGCCTCACAACCAGGAGGTCTTTTTGGGACAGCTACAAACACCAGCACTGGGACAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1842 TTTGGGACAGGAACAGGTCTCTTTGGGCAGCCCAATACTGGATTTGGTGCAGTTGGTTCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1843 ACCCTGTTTGGCAATAACAAGCTTACAACTTTTGGAACCAGCACAACCAGTGCTCCTTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1844 TTTGGTACAACCAGTGGCGGGCTCTTCGGTAACAAACCAACCCTGACTTTAGGAACCAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1845 ACAAACACTTCCAATTTTGGGTTTGGCACAAATAACAGTGGGAGCAGTATTTTTGGAAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1846 AAGCCAGCAGCTGGAACTTTGGGAACTGGACTTGGTACAGGATTTGGAACAGCTTTGACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1847 GATCCAAATGCTTCTGCTGCCCAGCAGGCTGTTCTCCAGCAGCACCTCAATAGCCTAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1848 TACTCACCCTTTGGAGACTCCCCCCTCTTCCGGAATCCTATGTCAGATCCTAAGAAGAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1849 GAAGAGAGACTGAAACCAACCAATCCAGCTGCTCAGAAAGCTCTTACAACACCTACTCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1850 TATAAACTTACACCTCGCCCTGCTACCAGAGTCAGGCCAAAGGCTTTGCAAACAACAGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1851 ACAGCCAAATCACATCTCTTTGATGGGCTGGATGACGATGAACCATCTCTAGCCAACGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1852 GCATTCATGCCTAAAAAGAGCATCAAGAAGTTGGTTTTGAAAAATCTCAACAATAGCAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1853 CTCTTTTCTCCTGTTAATCATGATTCAGAAGATCTAGCTTCACCCTCTGAGTATCCAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1854 AATGGAGAAAGATTTAGCTTCCTGAGCAAACCTGTTGATGAGAACAATCAGCAGGATGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1855 GAAGATGACTCTCTTGTATCACGATTTTACACTAATCCTATTGCCAAACCCATTCCACAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1856 ACTCCAGAGAGTGTTGGAAACAAAAATAACAGTAGCAGCAATGTGGAAGATACCATTGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1857 GCCTTGAACATGCGTGCTGCTTTGCGCAATGGATTGGAAGGAAGCAGTGAAGAGACGTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1858 TTCCATGATGAGTCATTGCAAGATGACCGAGAAGAGATAGAAAATAATGCTTACCACATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1859 CACCCAGCAGGCATTGTTCTCACAAAAGTTGGTTATTACACTATCCCATCTATGGATGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1860 CTTGCTAAAATTACCAACGAGAAGGGAGAATGCATTGTTTCTGACTTCACCATTGGTCGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1861 AAAGGATATGGCTCAATCTATTTTGAAGGAGATGTGAATTTGACAAATCTAAATTTGGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1862 GATATTGTGCATATCCGAAGGAAAGAAGTTATTGTCTATGTAGATGATAACCAAAAGCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1863 CCTGTGGGTGAAGGGCTAAATAGGAAGGCTGAAGTTACTTTGGATGGAGTTTGGCCAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1864 GATAAAACATCCCGGTGTTTAATAAAGAGTCCAGATCGACTTGCTGATATCAACTATGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1865 GGGAGATTAGAAGCAGTCTCAAGAAAGCAAGGGGCCCAATTCAAGGAGTATCGGCCTGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1866 ACTGGTTCTTGGGTATTTAAGGTCTCCCATTTTTCCAAGTATGGCCTTCAGGATTCTGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1867 GAAGAGGAGGAGGAACACCCACCCAAAACGACTTCAAAGAAGCTGAAGACTGCCCCTTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1868 CCCCCTGCAGGCCAGGCAACCACTTTCCAGATGACTCTTAATGGCAAGCCTGCACCCCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1869 CCTCAGAGCCAGAGCCCAGAAGTGGAGCAGTTAGGCAGGGTTGTGGAACTGGACAGCGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1870 ATGGTAGATATCACCCAGGAGCCAGTTCCAGATTCTGTGTTAGAAGAGAGTGTGCCCGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1871 GATCAGGAGCCTGTGTCTGCTTCAACGCATATTGCATCTTCACTGGGAATTAATCCACAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1872 GTTTTACAGATCATGAAAGCATCATTGCTTGTTGACGAAGAAGATGTAGATGCCATGGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1873 CAACGCTTTGGTCACATCCCTTCCAAAGGAGAGACTGTCCAGGAAATCTGTTCTCCTAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1874 CTCCCCATTTCAGCCTCCCACTCATCAAAATCCCGCTCCATAGTTGGTGGGTTGCTGCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1875 TCAAAATTTGCAAGTGGAACTTTTCTTTCACCAAGTGCCTCCGTGCAAGAATGTCGCACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1876 CCCAGGACATCATCTCGCATGAACATCCCATCCACATCCCCCTGGTCTGTCCCTCTGCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1877 CTGGCCACTGTGTTCACAGTGCCCAGCCCAGCCCCTGAGGTTCAGCTAAAAACAGTGGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1878 ATACGAAGGCAACCAGGCCTAGTCCCTCTTGAAAAATCCATTACATATGGCAAGGGGAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1879 CTCTTGATGGACATGGCCCTATTCATGGGACGTTCATTTCGGGTTGGTTGGGGTCCCAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1880 TGGACTCTTGCTAATAGTGGAGAACAACTGCATGGCTCCCATGAACTGGAAAATCATCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1881 GTTGCCGATTCTATGGAATATGGATTCCTGCCCAATCCAGTAGCTGTTAAATCGTGAGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1882 ATGTTTATTGATGCTTTGGGGGAATGTCCACATTATAGTTGGGGCTGTTCTGTTATCAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1883 AAACCCAAGGTCAGCACCCTGCTTTTTGATCTCTCTATATAAATTTTTAACCCAAGTATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1884 AGTATTTCATATGTTATGTACATAGTATCATATATGTTCCTATGTAGTCCCTACAATTAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1885 GTCCTCTGGTAATTATCATACAAAATGTATTGCATTTACACCAAATAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1886 >comp50_c1_seq4 len=3777 path=[124800:0-145 124946:146-1346 126147:1347-1438 126380:1439-2774 127716:2775-3541 131163:3542-3776]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1887 CGGCGTGTGACGCAGTCAGGCCTCTGCGCGCTGCGCCCGAAGCGGCGGTCGGTGGCAGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1888 GCGGCGGCGACGACGGTTTTTCTGGAGGCCGCGCGGTGAGCGGCGGGTGACGGGCGGACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1889 TGGGCTCTCACTCCAGACGCACCGCTCTTTCTGAAGCAAACACTTGCTTTGAAGATGTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1890 AACAAATCATTTGGAACCCCCTTTGGGGGTAGTACAGGGGGCTTTGGCACAACGTCAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1891 TTTGGGCAAAATACTGGCTTTGGTACGACTAGTGGAGGAGCATTTGGAACATCTGCATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1892 GGTTCTAGCAACAATACTGGAGGCTTATTTGGAAATTCACAGACCAAACCAGGAGGATTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1893 TTTGGTACCAGTTCATTTAGCCAGCCAGCAACCTCCACAAGCACTGGGTTTGGGTTTGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1894 ACATCAACAGGAACATCAAATAGCTTATTTGGAACTGCAAGTACCGGGACCAGTCTTTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1895 TCATCCCAGAACAATGCATTTGCACAAAATAAACCAACTGGCTTTGGGAATTTTGGAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1896 AGTACTAGCAGTGGAGGACTCTTTGGAACTACAAATACCACCTCTAATCCTTTTGGTAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1897 ACATCTGGCTCCCTTTTTGGGCCAAGTAGTTTTACAGCAGCACCTACAGGAACTACCATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1898 AAATTTAATCCTCCCACTGGTACAGATACTATGGTCAAAGCTGGAGTTAGCACTAACATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1899 AGTACAAAGCATCAGTGTATTACTGCTATGAAAGAATATGAAAGCAAGTCATTAGAGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1900 CTACGTTTGGAGGATTATCAGGCTAACCGGAAAGGCCCACAGAACCAAGTGGGAGGAGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1901 ACCACGGCTGGCTTATTTGGGTCTTCTCCAGCAACTTCCAGTGCAACAGGGCTCTTCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1902 TCCTCCACCACTAATTCAGCCTTTTCATATGGTCAGAACAAAACTGCCTTTGGAACTAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1903 ACAACTGGATTTGGAACAAATCCAGGTGGTCTCTTTGGCCAACAGAATCAACAGACTACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1904 AGTCTCTTCAGCAAACCATTTGGCCAGGCTACAACCACCCCGAATACTGGCTTTTCCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1905 GGTAATACCAGCACCCTTGGACAGCCAAGCACCAATACTATGGGCCTATTTGGAGTAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1906 CAAGCCTCACAACCAGGAGGTCTTTTTGGGACAGCTACAAACACCAGCACTGGGACAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1907 TTTGGGACAGGAACAGGTCTCTTTGGGCAGCCCAATACTGGATTTGGTGCAGTTGGTTCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1908 ACCCTGTTTGGCAATAACAAGCTTACAACTTTTGGAACCAGCACAACCAGTGCTCCTTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1909 TTTGGTACAACCAGTGGCGGGCTCTTCGGGTTTGGCACAAATAACAGTGGGAGCAGTATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1910 TTTGGAAGTAAGCCAGCAGCTGGAACTTTGGGAACTGGACTTGGTACAGGATTTGGAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1911 GCTTTGACAGATCCAAATGCTTCTGCTGCCCAGCAGGCTGTTCTCCAGCAGCACCTCAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1912 AGCCTAACATACTCACCCTTTGGAGACTCCCCCCTCTTCCGGAATCCTATGTCAGATCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1913 AAGAAGAAAGAAGAGAGACTGAAACCAACCAATCCAGCTGCTCAGAAAGCTCTTACAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1914 CCTACTCATTATAAACTTACACCTCGCCCTGCTACCAGAGTCAGGCCAAAGGCTTTGCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1915 ACAACAGGCACAGCCAAATCACATCTCTTTGATGGGCTGGATGACGATGAACCATCTCTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1916 GCCAACGGAGCATTCATGCCTAAAAAGAGCATCAAGAAGTTGGTTTTGAAAAATCTCAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1917 AATAGCAATCTCTTTTCTCCTGTTAATCATGATTCAGAAGATCTAGCTTCACCCTCTGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1918 TATCCAGAAAATGGAGAAAGATTTAGCTTCCTGAGCAAACCTGTTGATGAGAACAATCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1919 CAGGATGGAGAAGATGACTCTCTTGTATCACGATTTTACACTAATCCTATTGCCAAACCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1920 ATTCCACAAACTCCAGAGAGTGTTGGAAACAAAAATAACAGTAGCAGCAATGTGGAAGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1921 ACCATTGTTGCCTTGAACATGCGTGCTGCTTTGCGCAATGGATTGGAAGGAAGCAGTGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1922 GAGACGTCATTCCATGATGAGTCATTGCAAGATGACCGAGAAGAGATAGAAAATAATGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1923 TACCACATACACCCAGCAGGCATTGTTCTCACAAAAGTTGGTTATTACACTATCCCATCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1924 ATGGATGACCTTGCTAAAATTACCAACGAGAAGGGAGAATGCATTGTTTCTGACTTCACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1925 ATTGGTCGTAAAGGATATGGCTCAATCTATTTTGAAGGAGATGTGAATTTGACAAATCTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1926 AATTTGGATGATATTGTGCATATCCGAAGGAAAGAAGTTATTGTCTATGTAGATGATAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1927 CAAAAGCCACCTGTGGGTGAAGGGCTAAATAGGAAGGCTGAAGTTACTTTGGATGGAGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1928 TGGCCAACAGATAAAACATCCCGGTGTTTAATAAAGAGTCCAGATCGACTTGCTGATATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1929 AACTATGAGGGGAGATTAGAAGCAGTCTCAAGAAAGCAAGGGGCCCAATTCAAGGAGTAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1930 CGGCCTGAAACTGGTTCTTGGGTATTTAAGGTCTCCCATTTTTCCAAGTATGGCCTTCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1931 GATTCTGATGAAGAGGAGGAGGAACACCCACCCAAAACGACTTCAAAGAAGCTGAAGACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1932 GCCCCTTTGCCCCCTGCAGGCCAGGCAACCACTTTCCAGATGACTCTTAATGGCAAGCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1933 GCACCCCCACCTCAGAGCCAGAGCCCAGAAGTGGAGCAGTTAGGCAGGGTTGTGGAACTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1934 GACAGCGACATGGTAGATATCACCCAGGAGCCAGTTCCAGATTCTGTGTTAGAAGAGAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1935 GTGCCCGAGGATCAGGAGCCTGTGTCTGCTTCAACGCATATTGCATCTTCACTGGGAATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1936 AATCCACATGTTTTACAGATCATGAAAGCATCATTGCTTGTTGACGAAGAAGATGTAGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1937 GCCATGGATCAACGCTTTGGTCACATCCCTTCCAAAGGAGAGACTGTCCAGGAAATCTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1938 TCTCCTAGACTCCCCATTTCAGCCTCCCACTCATCAAAATCCCGCTCCATAGTTGGTGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1939 TTGCTGCAATCAAAATTTGCAAGTGGAACTTTTCTTTCACCAAGTGCCTCCGTGCAAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1940 TGTCGCACTCCCAGGACATCATCTCGCATGAACATCCCATCCACATCCCCCTGGTCTGTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1941 CCTCTGCCCCTGGCCACTGTGTTCACAGTGCCCAGCCCAGCCCCTGAGGTTCAGCTAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1942 ACAGTGGGGATACGAAGGCAACCAGGCCTAGTCCCTCTTGAAAAATCCATTACATATGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1943 AAGGGGAAGCTCTTGATGGACATGGCCCTATTCATGGGACGTTCATTTCGGGTTGGTTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1944 GGTCCCAACTGGACTCTTGCTAATAGTGGAGAACAACTGCATGGCTCCCATGAACTGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1945 AATCATCAGGTTGCCGATTCTATGGAATATGGATTCCTGCCCAATCCAGTAGCTGTTAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1946 TCGTGAGTTATGTTTATTGATGCTTTGGGGGAATGTCCACATTATAGTTGGGGCTGTTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1947 GTTATCAAGAAACCCAAGGTCAGCACCCTGCTTTTTGATCTCTCTATATAAATTTTTAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1948 CCAAGTATAAGTATTTCATATGTTATGTACATAGTATCATATATGTTCCTATGTAGTCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1949 TACAATTAAGTCCTCTGGTAATTATCATACAAAATGTATTGCATTTACACCAAATAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1950 >comp50_c1_seq5 len=3969 path=[124800:0-145 124946:146-1346 131552:1347-1397 126147:1398-1489 126239:1490-1630 126380:1631-2966 127716:2967-3733 131163:3734-3968]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1951 CGGCGTGTGACGCAGTCAGGCCTCTGCGCGCTGCGCCCGAAGCGGCGGTCGGTGGCAGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1952 GCGGCGGCGACGACGGTTTTTCTGGAGGCCGCGCGGTGAGCGGCGGGTGACGGGCGGACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1953 TGGGCTCTCACTCCAGACGCACCGCTCTTTCTGAAGCAAACACTTGCTTTGAAGATGTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1954 AACAAATCATTTGGAACCCCCTTTGGGGGTAGTACAGGGGGCTTTGGCACAACGTCAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1955 TTTGGGCAAAATACTGGCTTTGGTACGACTAGTGGAGGAGCATTTGGAACATCTGCATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1956 GGTTCTAGCAACAATACTGGAGGCTTATTTGGAAATTCACAGACCAAACCAGGAGGATTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1957 TTTGGTACCAGTTCATTTAGCCAGCCAGCAACCTCCACAAGCACTGGGTTTGGGTTTGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1958 ACATCAACAGGAACATCAAATAGCTTATTTGGAACTGCAAGTACCGGGACCAGTCTTTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1959 TCATCCCAGAACAATGCATTTGCACAAAATAAACCAACTGGCTTTGGGAATTTTGGAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1960 AGTACTAGCAGTGGAGGACTCTTTGGAACTACAAATACCACCTCTAATCCTTTTGGTAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1961 ACATCTGGCTCCCTTTTTGGGCCAAGTAGTTTTACAGCAGCACCTACAGGAACTACCATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1962 AAATTTAATCCTCCCACTGGTACAGATACTATGGTCAAAGCTGGAGTTAGCACTAACATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1963 AGTACAAAGCATCAGTGTATTACTGCTATGAAAGAATATGAAAGCAAGTCATTAGAGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1964 CTACGTTTGGAGGATTATCAGGCTAACCGGAAAGGCCCACAGAACCAAGTGGGAGGAGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1965 ACCACGGCTGGCTTATTTGGGTCTTCTCCAGCAACTTCCAGTGCAACAGGGCTCTTCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1966 TCCTCCACCACTAATTCAGCCTTTTCATATGGTCAGAACAAAACTGCCTTTGGAACTAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1967 ACAACTGGATTTGGAACAAATCCAGGTGGTCTCTTTGGCCAACAGAATCAACAGACTACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1968 AGTCTCTTCAGCAAACCATTTGGCCAGGCTACAACCACCCCGAATACTGGCTTTTCCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1969 GGTAATACCAGCACCCTTGGACAGCCAAGCACCAATACTATGGGCCTATTTGGAGTAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1970 CAAGCCTCACAACCAGGAGGTCTTTTTGGGACAGCTACAAACACCAGCACTGGGACAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1971 TTTGGGACAGGAACAGGTCTCTTTGGGCAGCCCAATACTGGATTTGGTGCAGTTGGTTCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1972 ACCCTGTTTGGCAATAACAAGCTTACAACTTTTGGAACCAGCACAACCAGTGCTCCTTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1973 TTTGGTACAACCAGTGGCGGGCTCTTCGGTAACAAACCAACCCTGACTTTAGGAACCAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1974 ACAAACACTTCCAATTTTGGGTTTGGCACAAATAACAGTGGGAGCAGTATTTTTGGAAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1975 AAGCCAGCAGCTGGAACTTTGGGAACTGGACTTGGTACAGGATTTGGAACAGCTCTTGGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1976 GCTGGACAGGCATCTTTGTTTGGAAACAACCAACCTAAGATTGGAGGGCCTCTTGGTACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1977 GGAGCCTTTGGGGCCCCTGGATTTAATACTTCGACAGCCATTTTGGGCTTTGGCGCCCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1978 CAGGCCCCAGTAGCTTTGACAGATCCAAATGCTTCTGCTGCCCAGCAGGCTGTTCTCCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1979 CAGCACCTCAATAGCCTAACATACTCACCCTTTGGAGACTCCCCCCTCTTCCGGAATCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1980 ATGTCAGATCCTAAGAAGAAAGAAGAGAGACTGAAACCAACCAATCCAGCTGCTCAGAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1981 GCTCTTACAACACCTACTCATTATAAACTTACACCTCGCCCTGCTACCAGAGTCAGGCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1982 AAGGCTTTGCAAACAACAGGCACAGCCAAATCACATCTCTTTGATGGGCTGGATGACGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1983 GAACCATCTCTAGCCAACGGAGCATTCATGCCTAAAAAGAGCATCAAGAAGTTGGTTTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1984 AAAAATCTCAACAATAGCAATCTCTTTTCTCCTGTTAATCATGATTCAGAAGATCTAGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1985 TCACCCTCTGAGTATCCAGAAAATGGAGAAAGATTTAGCTTCCTGAGCAAACCTGTTGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1986 GAGAACAATCAGCAGGATGGAGAAGATGACTCTCTTGTATCACGATTTTACACTAATCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1987 ATTGCCAAACCCATTCCACAAACTCCAGAGAGTGTTGGAAACAAAAATAACAGTAGCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1988 AATGTGGAAGATACCATTGTTGCCTTGAACATGCGTGCTGCTTTGCGCAATGGATTGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1989 GGAAGCAGTGAAGAGACGTCATTCCATGATGAGTCATTGCAAGATGACCGAGAAGAGATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1990 GAAAATAATGCTTACCACATACACCCAGCAGGCATTGTTCTCACAAAAGTTGGTTATTAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1991 ACTATCCCATCTATGGATGACCTTGCTAAAATTACCAACGAGAAGGGAGAATGCATTGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1992 TCTGACTTCACCATTGGTCGTAAAGGATATGGCTCAATCTATTTTGAAGGAGATGTGAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1993 TTGACAAATCTAAATTTGGATGATATTGTGCATATCCGAAGGAAAGAAGTTATTGTCTAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1994 GTAGATGATAACCAAAAGCCACCTGTGGGTGAAGGGCTAAATAGGAAGGCTGAAGTTACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1995 TTGGATGGAGTTTGGCCAACAGATAAAACATCCCGGTGTTTAATAAAGAGTCCAGATCGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1996 CTTGCTGATATCAACTATGAGGGGAGATTAGAAGCAGTCTCAAGAAAGCAAGGGGCCCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1997 TTCAAGGAGTATCGGCCTGAAACTGGTTCTTGGGTATTTAAGGTCTCCCATTTTTCCAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1998 TATGGCCTTCAGGATTCTGATGAAGAGGAGGAGGAACACCCACCCAAAACGACTTCAAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
1999 AAGCTGAAGACTGCCCCTTTGCCCCCTGCAGGCCAGGCAACCACTTTCCAGATGACTCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2000 AATGGCAAGCCTGCACCCCCACCTCAGAGCCAGAGCCCAGAAGTGGAGCAGTTAGGCAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2001 GTTGTGGAACTGGACAGCGACATGGTAGATATCACCCAGGAGCCAGTTCCAGATTCTGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2002 TTAGAAGAGAGTGTGCCCGAGGATCAGGAGCCTGTGTCTGCTTCAACGCATATTGCATCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2003 TCACTGGGAATTAATCCACATGTTTTACAGATCATGAAAGCATCATTGCTTGTTGACGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2004 GAAGATGTAGATGCCATGGATCAACGCTTTGGTCACATCCCTTCCAAAGGAGAGACTGTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2005 CAGGAAATCTGTTCTCCTAGACTCCCCATTTCAGCCTCCCACTCATCAAAATCCCGCTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2006 ATAGTTGGTGGGTTGCTGCAATCAAAATTTGCAAGTGGAACTTTTCTTTCACCAAGTGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2007 TCCGTGCAAGAATGTCGCACTCCCAGGACATCATCTCGCATGAACATCCCATCCACATCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2008 CCCTGGTCTGTCCCTCTGCCCCTGGCCACTGTGTTCACAGTGCCCAGCCCAGCCCCTGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2009 GTTCAGCTAAAAACAGTGGGGATACGAAGGCAACCAGGCCTAGTCCCTCTTGAAAAATCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2010 ATTACATATGGCAAGGGGAAGCTCTTGATGGACATGGCCCTATTCATGGGACGTTCATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2011 CGGGTTGGTTGGGGTCCCAACTGGACTCTTGCTAATAGTGGAGAACAACTGCATGGCTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2012 CATGAACTGGAAAATCATCAGGTTGCCGATTCTATGGAATATGGATTCCTGCCCAATCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2013 GTAGCTGTTAAATCGTGAGTTATGTTTATTGATGCTTTGGGGGAATGTCCACATTATAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2014 TGGGGCTGTTCTGTTATCAAGAAACCCAAGGTCAGCACCCTGCTTTTTGATCTCTCTATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2015 TAAATTTTTAACCCAAGTATAAGTATTTCATATGTTATGTACATAGTATCATATATGTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2016 CTATGTAGTCCCTACAATTAAGTCCTCTGGTAATTATCATACAAAATGTATTGCATTTAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2017 ACCAAATAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2018 >comp50_c1_seq6 len=5728 path=[124800:0-145 124946:146-1346 131552:1347-1397 126147:1398-1489 126380:1490-2825 127716:2826-3592 128483:3593-4123 129014:4124-4299 129190:4300-4310 129201:4311-4960 129851:4961-5727]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2019 CGGCGTGTGACGCAGTCAGGCCTCTGCGCGCTGCGCCCGAAGCGGCGGTCGGTGGCAGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2020 GCGGCGGCGACGACGGTTTTTCTGGAGGCCGCGCGGTGAGCGGCGGGTGACGGGCGGACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2021 TGGGCTCTCACTCCAGACGCACCGCTCTTTCTGAAGCAAACACTTGCTTTGAAGATGTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2022 AACAAATCATTTGGAACCCCCTTTGGGGGTAGTACAGGGGGCTTTGGCACAACGTCAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2023 TTTGGGCAAAATACTGGCTTTGGTACGACTAGTGGAGGAGCATTTGGAACATCTGCATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2024 GGTTCTAGCAACAATACTGGAGGCTTATTTGGAAATTCACAGACCAAACCAGGAGGATTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2025 TTTGGTACCAGTTCATTTAGCCAGCCAGCAACCTCCACAAGCACTGGGTTTGGGTTTGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2026 ACATCAACAGGAACATCAAATAGCTTATTTGGAACTGCAAGTACCGGGACCAGTCTTTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2027 TCATCCCAGAACAATGCATTTGCACAAAATAAACCAACTGGCTTTGGGAATTTTGGAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2028 AGTACTAGCAGTGGAGGACTCTTTGGAACTACAAATACCACCTCTAATCCTTTTGGTAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2029 ACATCTGGCTCCCTTTTTGGGCCAAGTAGTTTTACAGCAGCACCTACAGGAACTACCATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2030 AAATTTAATCCTCCCACTGGTACAGATACTATGGTCAAAGCTGGAGTTAGCACTAACATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2031 AGTACAAAGCATCAGTGTATTACTGCTATGAAAGAATATGAAAGCAAGTCATTAGAGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2032 CTACGTTTGGAGGATTATCAGGCTAACCGGAAAGGCCCACAGAACCAAGTGGGAGGAGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2033 ACCACGGCTGGCTTATTTGGGTCTTCTCCAGCAACTTCCAGTGCAACAGGGCTCTTCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2034 TCCTCCACCACTAATTCAGCCTTTTCATATGGTCAGAACAAAACTGCCTTTGGAACTAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2035 ACAACTGGATTTGGAACAAATCCAGGTGGTCTCTTTGGCCAACAGAATCAACAGACTACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2036 AGTCTCTTCAGCAAACCATTTGGCCAGGCTACAACCACCCCGAATACTGGCTTTTCCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2037 GGTAATACCAGCACCCTTGGACAGCCAAGCACCAATACTATGGGCCTATTTGGAGTAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2038 CAAGCCTCACAACCAGGAGGTCTTTTTGGGACAGCTACAAACACCAGCACTGGGACAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2039 TTTGGGACAGGAACAGGTCTCTTTGGGCAGCCCAATACTGGATTTGGTGCAGTTGGTTCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2040 ACCCTGTTTGGCAATAACAAGCTTACAACTTTTGGAACCAGCACAACCAGTGCTCCTTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2041 TTTGGTACAACCAGTGGCGGGCTCTTCGGTAACAAACCAACCCTGACTTTAGGAACCAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2042 ACAAACACTTCCAATTTTGGGTTTGGCACAAATAACAGTGGGAGCAGTATTTTTGGAAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2043 AAGCCAGCAGCTGGAACTTTGGGAACTGGACTTGGTACAGGATTTGGAACAGCTTTGACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2044 GATCCAAATGCTTCTGCTGCCCAGCAGGCTGTTCTCCAGCAGCACCTCAATAGCCTAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2045 TACTCACCCTTTGGAGACTCCCCCCTCTTCCGGAATCCTATGTCAGATCCTAAGAAGAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2046 GAAGAGAGACTGAAACCAACCAATCCAGCTGCTCAGAAAGCTCTTACAACACCTACTCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2047 TATAAACTTACACCTCGCCCTGCTACCAGAGTCAGGCCAAAGGCTTTGCAAACAACAGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2048 ACAGCCAAATCACATCTCTTTGATGGGCTGGATGACGATGAACCATCTCTAGCCAACGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2049 GCATTCATGCCTAAAAAGAGCATCAAGAAGTTGGTTTTGAAAAATCTCAACAATAGCAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2050 CTCTTTTCTCCTGTTAATCATGATTCAGAAGATCTAGCTTCACCCTCTGAGTATCCAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2051 AATGGAGAAAGATTTAGCTTCCTGAGCAAACCTGTTGATGAGAACAATCAGCAGGATGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2052 GAAGATGACTCTCTTGTATCACGATTTTACACTAATCCTATTGCCAAACCCATTCCACAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2053 ACTCCAGAGAGTGTTGGAAACAAAAATAACAGTAGCAGCAATGTGGAAGATACCATTGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2054 GCCTTGAACATGCGTGCTGCTTTGCGCAATGGATTGGAAGGAAGCAGTGAAGAGACGTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2055 TTCCATGATGAGTCATTGCAAGATGACCGAGAAGAGATAGAAAATAATGCTTACCACATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2056 CACCCAGCAGGCATTGTTCTCACAAAAGTTGGTTATTACACTATCCCATCTATGGATGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2057 CTTGCTAAAATTACCAACGAGAAGGGAGAATGCATTGTTTCTGACTTCACCATTGGTCGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2058 AAAGGATATGGCTCAATCTATTTTGAAGGAGATGTGAATTTGACAAATCTAAATTTGGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2059 GATATTGTGCATATCCGAAGGAAAGAAGTTATTGTCTATGTAGATGATAACCAAAAGCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2060 CCTGTGGGTGAAGGGCTAAATAGGAAGGCTGAAGTTACTTTGGATGGAGTTTGGCCAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2061 GATAAAACATCCCGGTGTTTAATAAAGAGTCCAGATCGACTTGCTGATATCAACTATGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2062 GGGAGATTAGAAGCAGTCTCAAGAAAGCAAGGGGCCCAATTCAAGGAGTATCGGCCTGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2063 ACTGGTTCTTGGGTATTTAAGGTCTCCCATTTTTCCAAGTATGGCCTTCAGGATTCTGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2064 GAAGAGGAGGAGGAACACCCACCCAAAACGACTTCAAAGAAGCTGAAGACTGCCCCTTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2065 CCCCCTGCAGGCCAGGCAACCACTTTCCAGATGACTCTTAATGGCAAGCCTGCACCCCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2066 CCTCAGAGCCAGAGCCCAGAAGTGGAGCAGTTAGGCAGGGTTGTGGAACTGGACAGCGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2067 ATGGTAGATATCACCCAGGAGCCAGTTCCAGATTCTGTGTTAGAAGAGAGTGTGCCCGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2068 GATCAGGAGCCTGTGTCTGCTTCAACGCATATTGCATCTTCACTGGGAATTAATCCACAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2069 GTTTTACAGATCATGAAAGCATCATTGCTTGTTGACGAAGAAGATGTAGATGCCATGGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2070 CAACGCTTTGGTCACATCCCTTCCAAAGGAGAGACTGTCCAGGAAATCTGTTCTCCTAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2071 CTCCCCATTTCAGCCTCCCACTCATCAAAATCCCGCTCCATAGTTGGTGGGTTGCTGCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2072 TCAAAATTTGCAAGTGGAACTTTTCTTTCACCAAGTGCCTCCGTGCAAGAATGTCGCACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2073 CCCAGGACATCATCTCGCATGAACATCCCATCCACATCCCCCTGGTCTGTCCCTCTGCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2074 CTGGCCACTGTGTTCACAGTGCCCAGCCCAGCCCCTGAGGTTCAGCTAAAAACAGTGGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2075 ATACGAAGGCAACCAGGCCTAGTCCCTCTTGAAAAATCCATTACATATGGCAAGGGGAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2076 CTCTTGATGGACATGGCCCTATTCATGGGACGTTCATTTCGGGTTGGTTGGGGTCCCAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2077 TGGACTCTTGCTAATAGTGGAGAACAACTGCATGGCTCCCATGAACTGGAAAATCATCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2078 GTTGCCGATTCTATGGAATATGGATTCCTGCCCAATCCAGTAGCTGTTAAATCTCTATCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2079 GAATCCCCATTCAAAGTTCATTTGGAAAAACTCGGCTTAAGACAGAGGAAGCTGGATGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2080 GATCTGCAGTTATACCAGACACCTCTAGAGCTCAAATTAAAACATAGCACTGTCCATGTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2081 GATGAGCTGTGTCCTCTCATTGTCCCCAACCCTGGGGTTTCAGTCATTCATGATTATGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2082 GATTGGGTTAAGGACTCACCTGGAGATTTCCTGGAACTACCAATTGTGAAGCACTGGAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2083 CTGACATGGACATTATGTGAAGCCCTATGGGGCCACCTGAAGGAGCTTGACGGCCAGCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2084 GATGAGCCCAGCGAATACATTCAGACTCTGGAGCGTAGAAGAGCTTTTTCCCGCTGGCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2085 TCACATACCGCTGCACCTCAGATTGAAGAGGAAGTCTCCTTAACCCGCAGAGACAGTCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2086 GTAGAGGCTGTCTTCAGCTACCTCACGGGCAGTAGGATTAGTGAGGCCTGTTGTCTGGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2087 CAGCAGTCAGGTGATCATCGCCTTGCCCTTCTTCTGTCTCAGTTGGTGGGAAGCCAGTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2088 GTCCGGGAGCTGCTCACCATGCAGTTGGCCGATTGGCATCAGCTCCAGGCTGACTCCTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2089 ATCCACGATGAGCGATTGCGCATATTTGCCCTGTTGGCTGGAAAACCGGTGTGGCAGCTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2090 TCAGAGCAGAAACAAATCAATGTTTGCTCCCAGCTAGATTGGAAACGAACACTTGCTATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2091 CATCTTTGGTATTTGCTTCCGCCAACCGCCTCCATTTCCAGGGCTCTCAGCATGTATGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2092 GAAGCATTTCAGAATACTCCTGAGGGTGATAAATATGCCTGCTCCCCTCTTCCTTCTTAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2093 CTGGAGGGCTGCGGCTGTATGGTAGAGGAAGAAAAAGACTCCCGGAGACCACTTCAAGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2094 GTTTGCTTTCATCTTCTAAAACTCTACAGTGACAGACATTATGAGCTCAATCAGCTATTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2095 GAACCTCGAAGCATAACTGCAGATCCTTTGGACTACCGCCTGAGCTGGCACCTTTGGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2096 GTGCTACGTGCTCTTAACTATACCCATCTCTCAGAACAGTGTGAAGGTGTGCTACAGGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2097 AGTTATGCTGGCCAACTGGAAAGTGAAGGACTCTGGGAGTGGGCCATCTTTGTCTTCCTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2098 CACATTGACAACTCGGGCATGCGTGAGAAGGCTGTTCGAGAGCTGCTGACAAGGCACTGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2099 CAACTGTCAGAGACCCCTGAGTCTTGGGCTAAGGAGGCGTTCCTCACACAGAAGCTTTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2100 GTGCCTGCTGAGTGGATTCATGAGGCCAAAGCAGTTCGAGCACACATGGAATCCAATAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2101 CACTTGGAGGCCCTCTATTTATTTAAAGCTGGTCACTGGAACCGCTGCCACAAACTAGTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2102 ATTCGTCACCTAGCTTCTGATGCCATTATTAATGAGAACTATGACTACCTGAAAGGATTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2103 TTAGAAGATCTGGCACCTCCAGAGCGCAGCAGCCTCATCCAGGACTGGGAAACATCTGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2104 CTCGTTTACCTGGATTATATTCGAGTGATTGAAATGCTCCACCGTATTCAGCAGGTGGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2105 TGCTCAGGTTATGAACTAGAGCACTTACATACCAAAGTGACTTCACTGTGCAATCGGATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2106 GAACAGATTCCGTGTTACAATGCCAAGGATCGCCTGGCTCAATCAGATATGGCCAAGCGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2107 GTAGCCAACTTACTGCGGGTAGTGCTGAGCCTTCAGCATGCTCCTGATGCCACCTCCAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2108 TCAACGCCAGACCCTCAGCGAGTCCCTTTGCGTCTTTTGGCTCCCCACATTGGCAGGCTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2109 CCCATGCCTGAGGACTACGCCTTGGAGGAACTGCGAGGCCTTACCCAGTCCTACCTTCGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2110 GAACTGACTGTTGGGAGCCAGTGAGCTTGGCTCTTGCCACCACACTCATGCCCACTCACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2111 CTCGCCACACCACAGTCCCCAGCACTGTTTTAGTTGACACTTTGCCAATCTCTGGGAATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2112 CTCCATTCCTTTCTGCTGCATCTTCTAGTTATTCAGGGGTTTTCCTAATACTGAGCATAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2113 CCTACAATAGCTCATAAGGGCTTCTGGAACAACAACAAAGAAGACAGGTCTCCATTTATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2114 AACCTCAAGACCTTTTTTTTTCTTTTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2115 >comp50_c1_seq7 len=5818 path=[124800:0-145 124946:146-1346 126147:1347-1438 126239:1439-1579 126380:1580-2915 127716:2916-3682 128483:3683-4213 129014:4214-4389 129190:4390-4400 129201:4401-5050 129851:5051-5817]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2116 CGGCGTGTGACGCAGTCAGGCCTCTGCGCGCTGCGCCCGAAGCGGCGGTCGGTGGCAGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2117 GCGGCGGCGACGACGGTTTTTCTGGAGGCCGCGCGGTGAGCGGCGGGTGACGGGCGGACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2118 TGGGCTCTCACTCCAGACGCACCGCTCTTTCTGAAGCAAACACTTGCTTTGAAGATGTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2119 AACAAATCATTTGGAACCCCCTTTGGGGGTAGTACAGGGGGCTTTGGCACAACGTCAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2120 TTTGGGCAAAATACTGGCTTTGGTACGACTAGTGGAGGAGCATTTGGAACATCTGCATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2121 GGTTCTAGCAACAATACTGGAGGCTTATTTGGAAATTCACAGACCAAACCAGGAGGATTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2122 TTTGGTACCAGTTCATTTAGCCAGCCAGCAACCTCCACAAGCACTGGGTTTGGGTTTGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2123 ACATCAACAGGAACATCAAATAGCTTATTTGGAACTGCAAGTACCGGGACCAGTCTTTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2124 TCATCCCAGAACAATGCATTTGCACAAAATAAACCAACTGGCTTTGGGAATTTTGGAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2125 AGTACTAGCAGTGGAGGACTCTTTGGAACTACAAATACCACCTCTAATCCTTTTGGTAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2126 ACATCTGGCTCCCTTTTTGGGCCAAGTAGTTTTACAGCAGCACCTACAGGAACTACCATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2127 AAATTTAATCCTCCCACTGGTACAGATACTATGGTCAAAGCTGGAGTTAGCACTAACATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2128 AGTACAAAGCATCAGTGTATTACTGCTATGAAAGAATATGAAAGCAAGTCATTAGAGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2129 CTACGTTTGGAGGATTATCAGGCTAACCGGAAAGGCCCACAGAACCAAGTGGGAGGAGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2130 ACCACGGCTGGCTTATTTGGGTCTTCTCCAGCAACTTCCAGTGCAACAGGGCTCTTCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2131 TCCTCCACCACTAATTCAGCCTTTTCATATGGTCAGAACAAAACTGCCTTTGGAACTAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2132 ACAACTGGATTTGGAACAAATCCAGGTGGTCTCTTTGGCCAACAGAATCAACAGACTACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2133 AGTCTCTTCAGCAAACCATTTGGCCAGGCTACAACCACCCCGAATACTGGCTTTTCCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2134 GGTAATACCAGCACCCTTGGACAGCCAAGCACCAATACTATGGGCCTATTTGGAGTAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2135 CAAGCCTCACAACCAGGAGGTCTTTTTGGGACAGCTACAAACACCAGCACTGGGACAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2136 TTTGGGACAGGAACAGGTCTCTTTGGGCAGCCCAATACTGGATTTGGTGCAGTTGGTTCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2137 ACCCTGTTTGGCAATAACAAGCTTACAACTTTTGGAACCAGCACAACCAGTGCTCCTTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2138 TTTGGTACAACCAGTGGCGGGCTCTTCGGGTTTGGCACAAATAACAGTGGGAGCAGTATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2139 TTTGGAAGTAAGCCAGCAGCTGGAACTTTGGGAACTGGACTTGGTACAGGATTTGGAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2140 GCTCTTGGTGCTGGACAGGCATCTTTGTTTGGAAACAACCAACCTAAGATTGGAGGGCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2141 CTTGGTACAGGAGCCTTTGGGGCCCCTGGATTTAATACTTCGACAGCCATTTTGGGCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2142 GGCGCCCCCCAGGCCCCAGTAGCTTTGACAGATCCAAATGCTTCTGCTGCCCAGCAGGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2143 GTTCTCCAGCAGCACCTCAATAGCCTAACATACTCACCCTTTGGAGACTCCCCCCTCTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2144 CGGAATCCTATGTCAGATCCTAAGAAGAAAGAAGAGAGACTGAAACCAACCAATCCAGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2145 GCTCAGAAAGCTCTTACAACACCTACTCATTATAAACTTACACCTCGCCCTGCTACCAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2146 GTCAGGCCAAAGGCTTTGCAAACAACAGGCACAGCCAAATCACATCTCTTTGATGGGCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2147 GATGACGATGAACCATCTCTAGCCAACGGAGCATTCATGCCTAAAAAGAGCATCAAGAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2148 TTGGTTTTGAAAAATCTCAACAATAGCAATCTCTTTTCTCCTGTTAATCATGATTCAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2149 GATCTAGCTTCACCCTCTGAGTATCCAGAAAATGGAGAAAGATTTAGCTTCCTGAGCAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2150 CCTGTTGATGAGAACAATCAGCAGGATGGAGAAGATGACTCTCTTGTATCACGATTTTAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2151 ACTAATCCTATTGCCAAACCCATTCCACAAACTCCAGAGAGTGTTGGAAACAAAAATAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2152 AGTAGCAGCAATGTGGAAGATACCATTGTTGCCTTGAACATGCGTGCTGCTTTGCGCAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2153 GGATTGGAAGGAAGCAGTGAAGAGACGTCATTCCATGATGAGTCATTGCAAGATGACCGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2154 GAAGAGATAGAAAATAATGCTTACCACATACACCCAGCAGGCATTGTTCTCACAAAAGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2155 GGTTATTACACTATCCCATCTATGGATGACCTTGCTAAAATTACCAACGAGAAGGGAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2156 TGCATTGTTTCTGACTTCACCATTGGTCGTAAAGGATATGGCTCAATCTATTTTGAAGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2157 GATGTGAATTTGACAAATCTAAATTTGGATGATATTGTGCATATCCGAAGGAAAGAAGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2158 ATTGTCTATGTAGATGATAACCAAAAGCCACCTGTGGGTGAAGGGCTAAATAGGAAGGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2159 GAAGTTACTTTGGATGGAGTTTGGCCAACAGATAAAACATCCCGGTGTTTAATAAAGAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2160 CCAGATCGACTTGCTGATATCAACTATGAGGGGAGATTAGAAGCAGTCTCAAGAAAGCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2161 GGGGCCCAATTCAAGGAGTATCGGCCTGAAACTGGTTCTTGGGTATTTAAGGTCTCCCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2162 TTTTCCAAGTATGGCCTTCAGGATTCTGATGAAGAGGAGGAGGAACACCCACCCAAAACG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2163 ACTTCAAAGAAGCTGAAGACTGCCCCTTTGCCCCCTGCAGGCCAGGCAACCACTTTCCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2164 ATGACTCTTAATGGCAAGCCTGCACCCCCACCTCAGAGCCAGAGCCCAGAAGTGGAGCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2165 TTAGGCAGGGTTGTGGAACTGGACAGCGACATGGTAGATATCACCCAGGAGCCAGTTCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2166 GATTCTGTGTTAGAAGAGAGTGTGCCCGAGGATCAGGAGCCTGTGTCTGCTTCAACGCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2167 ATTGCATCTTCACTGGGAATTAATCCACATGTTTTACAGATCATGAAAGCATCATTGCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2168 GTTGACGAAGAAGATGTAGATGCCATGGATCAACGCTTTGGTCACATCCCTTCCAAAGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2169 GAGACTGTCCAGGAAATCTGTTCTCCTAGACTCCCCATTTCAGCCTCCCACTCATCAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2170 TCCCGCTCCATAGTTGGTGGGTTGCTGCAATCAAAATTTGCAAGTGGAACTTTTCTTTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2171 CCAAGTGCCTCCGTGCAAGAATGTCGCACTCCCAGGACATCATCTCGCATGAACATCCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2172 TCCACATCCCCCTGGTCTGTCCCTCTGCCCCTGGCCACTGTGTTCACAGTGCCCAGCCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2173 GCCCCTGAGGTTCAGCTAAAAACAGTGGGGATACGAAGGCAACCAGGCCTAGTCCCTCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2174 GAAAAATCCATTACATATGGCAAGGGGAAGCTCTTGATGGACATGGCCCTATTCATGGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2175 CGTTCATTTCGGGTTGGTTGGGGTCCCAACTGGACTCTTGCTAATAGTGGAGAACAACTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2176 CATGGCTCCCATGAACTGGAAAATCATCAGGTTGCCGATTCTATGGAATATGGATTCCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2177 CCCAATCCAGTAGCTGTTAAATCTCTATCTGAATCCCCATTCAAAGTTCATTTGGAAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2178 CTCGGCTTAAGACAGAGGAAGCTGGATGAAGATCTGCAGTTATACCAGACACCTCTAGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2179 CTCAAATTAAAACATAGCACTGTCCATGTAGATGAGCTGTGTCCTCTCATTGTCCCCAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2180 CCTGGGGTTTCAGTCATTCATGATTATGCAGATTGGGTTAAGGACTCACCTGGAGATTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2181 CTGGAACTACCAATTGTGAAGCACTGGAGCCTGACATGGACATTATGTGAAGCCCTATGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2182 GGCCACCTGAAGGAGCTTGACGGCCAGCTGGATGAGCCCAGCGAATACATTCAGACTCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2183 GAGCGTAGAAGAGCTTTTTCCCGCTGGCTGTCACATACCGCTGCACCTCAGATTGAAGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2184 GAAGTCTCCTTAACCCGCAGAGACAGTCCCGTAGAGGCTGTCTTCAGCTACCTCACGGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2185 AGTAGGATTAGTGAGGCCTGTTGTCTGGCACAGCAGTCAGGTGATCATCGCCTTGCCCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2186 CTTCTGTCTCAGTTGGTGGGAAGCCAGTCAGTCCGGGAGCTGCTCACCATGCAGTTGGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2187 GATTGGCATCAGCTCCAGGCTGACTCCTTCATCCACGATGAGCGATTGCGCATATTTGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2188 CTGTTGGCTGGAAAACCGGTGTGGCAGCTCTCAGAGCAGAAACAAATCAATGTTTGCTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2189 CAGCTAGATTGGAAACGAACACTTGCTATCCATCTTTGGTATTTGCTTCCGCCAACCGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2190 TCCATTTCCAGGGCTCTCAGCATGTATGAAGAAGCATTTCAGAATACTCCTGAGGGTGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2191 AAATATGCCTGCTCCCCTCTTCCTTCTTACCTGGAGGGCTGCGGCTGTATGGTAGAGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2192 GAAAAAGACTCCCGGAGACCACTTCAAGATGTTTGCTTTCATCTTCTAAAACTCTACAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2193 GACAGACATTATGAGCTCAATCAGCTATTAGAACCTCGAAGCATAACTGCAGATCCTTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2194 GACTACCGCCTGAGCTGGCACCTTTGGGAAGTGCTACGTGCTCTTAACTATACCCATCTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2195 TCAGAACAGTGTGAAGGTGTGCTACAGGCCAGTTATGCTGGCCAACTGGAAAGTGAAGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2196 CTCTGGGAGTGGGCCATCTTTGTCTTCCTACACATTGACAACTCGGGCATGCGTGAGAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2197 GCTGTTCGAGAGCTGCTGACAAGGCACTGCCAACTGTCAGAGACCCCTGAGTCTTGGGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2198 AAGGAGGCGTTCCTCACACAGAAGCTTTGTGTGCCTGCTGAGTGGATTCATGAGGCCAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2199 GCAGTTCGAGCACACATGGAATCCAATAAGCACTTGGAGGCCCTCTATTTATTTAAAGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2200 GGTCACTGGAACCGCTGCCACAAACTAGTCATTCGTCACCTAGCTTCTGATGCCATTATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2201 AATGAGAACTATGACTACCTGAAAGGATTCTTAGAAGATCTGGCACCTCCAGAGCGCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2202 AGCCTCATCCAGGACTGGGAAACATCTGGGCTCGTTTACCTGGATTATATTCGAGTGATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2203 GAAATGCTCCACCGTATTCAGCAGGTGGATTGCTCAGGTTATGAACTAGAGCACTTACAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2204 ACCAAAGTGACTTCACTGTGCAATCGGATAGAACAGATTCCGTGTTACAATGCCAAGGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2205 CGCCTGGCTCAATCAGATATGGCCAAGCGGGTAGCCAACTTACTGCGGGTAGTGCTGAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2206 CTTCAGCATGCTCCTGATGCCACCTCCAACTCAACGCCAGACCCTCAGCGAGTCCCTTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2207 CGTCTTTTGGCTCCCCACATTGGCAGGCTCCCCATGCCTGAGGACTACGCCTTGGAGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2208 CTGCGAGGCCTTACCCAGTCCTACCTTCGAGAACTGACTGTTGGGAGCCAGTGAGCTTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2209 CTCTTGCCACCACACTCATGCCCACTCACACTCGCCACACCACAGTCCCCAGCACTGTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2210 TAGTTGACACTTTGCCAATCTCTGGGAATCCTCCATTCCTTTCTGCTGCATCTTCTAGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2211 ATTCAGGGGTTTTCCTAATACTGAGCATAGCCTACAATAGCTCATAAGGGCTTCTGGAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2212 AACAACAAAGAAGACAGGTCTCCATTTATCAACCTCAAGACCTTTTTTTTTCTTTTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2213 >comp50_c1_seq8 len=3011 path=[124800:0-145 124946:146-1346 131552:1347-1397 126147:1398-1489 126380:1490-2825 132231:2826-3010]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2214 CGGCGTGTGACGCAGTCAGGCCTCTGCGCGCTGCGCCCGAAGCGGCGGTCGGTGGCAGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2215 GCGGCGGCGACGACGGTTTTTCTGGAGGCCGCGCGGTGAGCGGCGGGTGACGGGCGGACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2216 TGGGCTCTCACTCCAGACGCACCGCTCTTTCTGAAGCAAACACTTGCTTTGAAGATGTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2217 AACAAATCATTTGGAACCCCCTTTGGGGGTAGTACAGGGGGCTTTGGCACAACGTCAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2218 TTTGGGCAAAATACTGGCTTTGGTACGACTAGTGGAGGAGCATTTGGAACATCTGCATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2219 GGTTCTAGCAACAATACTGGAGGCTTATTTGGAAATTCACAGACCAAACCAGGAGGATTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2220 TTTGGTACCAGTTCATTTAGCCAGCCAGCAACCTCCACAAGCACTGGGTTTGGGTTTGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2221 ACATCAACAGGAACATCAAATAGCTTATTTGGAACTGCAAGTACCGGGACCAGTCTTTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2222 TCATCCCAGAACAATGCATTTGCACAAAATAAACCAACTGGCTTTGGGAATTTTGGAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2223 AGTACTAGCAGTGGAGGACTCTTTGGAACTACAAATACCACCTCTAATCCTTTTGGTAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2224 ACATCTGGCTCCCTTTTTGGGCCAAGTAGTTTTACAGCAGCACCTACAGGAACTACCATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2225 AAATTTAATCCTCCCACTGGTACAGATACTATGGTCAAAGCTGGAGTTAGCACTAACATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2226 AGTACAAAGCATCAGTGTATTACTGCTATGAAAGAATATGAAAGCAAGTCATTAGAGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2227 CTACGTTTGGAGGATTATCAGGCTAACCGGAAAGGCCCACAGAACCAAGTGGGAGGAGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2228 ACCACGGCTGGCTTATTTGGGTCTTCTCCAGCAACTTCCAGTGCAACAGGGCTCTTCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2229 TCCTCCACCACTAATTCAGCCTTTTCATATGGTCAGAACAAAACTGCCTTTGGAACTAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2230 ACAACTGGATTTGGAACAAATCCAGGTGGTCTCTTTGGCCAACAGAATCAACAGACTACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2231 AGTCTCTTCAGCAAACCATTTGGCCAGGCTACAACCACCCCGAATACTGGCTTTTCCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2232 GGTAATACCAGCACCCTTGGACAGCCAAGCACCAATACTATGGGCCTATTTGGAGTAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2233 CAAGCCTCACAACCAGGAGGTCTTTTTGGGACAGCTACAAACACCAGCACTGGGACAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2234 TTTGGGACAGGAACAGGTCTCTTTGGGCAGCCCAATACTGGATTTGGTGCAGTTGGTTCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2235 ACCCTGTTTGGCAATAACAAGCTTACAACTTTTGGAACCAGCACAACCAGTGCTCCTTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2236 TTTGGTACAACCAGTGGCGGGCTCTTCGGTAACAAACCAACCCTGACTTTAGGAACCAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2237 ACAAACACTTCCAATTTTGGGTTTGGCACAAATAACAGTGGGAGCAGTATTTTTGGAAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2238 AAGCCAGCAGCTGGAACTTTGGGAACTGGACTTGGTACAGGATTTGGAACAGCTTTGACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2239 GATCCAAATGCTTCTGCTGCCCAGCAGGCTGTTCTCCAGCAGCACCTCAATAGCCTAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2240 TACTCACCCTTTGGAGACTCCCCCCTCTTCCGGAATCCTATGTCAGATCCTAAGAAGAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2241 GAAGAGAGACTGAAACCAACCAATCCAGCTGCTCAGAAAGCTCTTACAACACCTACTCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2242 TATAAACTTACACCTCGCCCTGCTACCAGAGTCAGGCCAAAGGCTTTGCAAACAACAGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2243 ACAGCCAAATCACATCTCTTTGATGGGCTGGATGACGATGAACCATCTCTAGCCAACGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2244 GCATTCATGCCTAAAAAGAGCATCAAGAAGTTGGTTTTGAAAAATCTCAACAATAGCAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2245 CTCTTTTCTCCTGTTAATCATGATTCAGAAGATCTAGCTTCACCCTCTGAGTATCCAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2246 AATGGAGAAAGATTTAGCTTCCTGAGCAAACCTGTTGATGAGAACAATCAGCAGGATGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2247 GAAGATGACTCTCTTGTATCACGATTTTACACTAATCCTATTGCCAAACCCATTCCACAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2248 ACTCCAGAGAGTGTTGGAAACAAAAATAACAGTAGCAGCAATGTGGAAGATACCATTGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2249 GCCTTGAACATGCGTGCTGCTTTGCGCAATGGATTGGAAGGAAGCAGTGAAGAGACGTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2250 TTCCATGATGAGTCATTGCAAGATGACCGAGAAGAGATAGAAAATAATGCTTACCACATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2251 CACCCAGCAGGCATTGTTCTCACAAAAGTTGGTTATTACACTATCCCATCTATGGATGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2252 CTTGCTAAAATTACCAACGAGAAGGGAGAATGCATTGTTTCTGACTTCACCATTGGTCGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2253 AAAGGATATGGCTCAATCTATTTTGAAGGAGATGTGAATTTGACAAATCTAAATTTGGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2254 GATATTGTGCATATCCGAAGGAAAGAAGTTATTGTCTATGTAGATGATAACCAAAAGCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2255 CCTGTGGGTGAAGGGCTAAATAGGAAGGCTGAAGTTACTTTGGATGGAGTTTGGCCAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2256 GATAAAACATCCCGGTGTTTAATAAAGAGTCCAGATCGACTTGCTGATATCAACTATGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2257 GGGAGATTAGAAGCAGTCTCAAGAAAGCAAGGGGCCCAATTCAAGGAGTATCGGCCTGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2258 ACTGGTTCTTGGGTATTTAAGGTCTCCCATTTTTCCAAGTATGGCCTTCAGGATTCTGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2259 GAAGAGGAGGAGGAACACCCACCCAAAACGACTTCAAAGAAGCTGAAGACTGCCCCTTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2260 CCCCCTGCAGGCCAGGCAACCACTTTCCAGATGACTCTTAATGGCAAGCCTGCACCCCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2261 CCTCAGGTAGAGAAGGGCAGAGAATGTGAATGCAGCTGTGGTAAAGAAGTCAGCTGTGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2262 ACCCTGGCTGCTATTTTTTACTCAAGATTTAAAGGGTTTTCTTGCTGTTTGGATCATTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2263 ACAGATTGTAACTTTCAATTTCTCTCATTTGGACTTGTAATGTTTTGATCAGTGATCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2264 TTGAGATAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2265 >comp50_c1_seq9 len=2960 path=[124800:0-145 124946:146-1346 126147:1347-1438 126380:1439-2774 132231:2775-2959]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2266 CGGCGTGTGACGCAGTCAGGCCTCTGCGCGCTGCGCCCGAAGCGGCGGTCGGTGGCAGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2267 GCGGCGGCGACGACGGTTTTTCTGGAGGCCGCGCGGTGAGCGGCGGGTGACGGGCGGACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2268 TGGGCTCTCACTCCAGACGCACCGCTCTTTCTGAAGCAAACACTTGCTTTGAAGATGTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2269 AACAAATCATTTGGAACCCCCTTTGGGGGTAGTACAGGGGGCTTTGGCACAACGTCAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2270 TTTGGGCAAAATACTGGCTTTGGTACGACTAGTGGAGGAGCATTTGGAACATCTGCATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2271 GGTTCTAGCAACAATACTGGAGGCTTATTTGGAAATTCACAGACCAAACCAGGAGGATTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2272 TTTGGTACCAGTTCATTTAGCCAGCCAGCAACCTCCACAAGCACTGGGTTTGGGTTTGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2273 ACATCAACAGGAACATCAAATAGCTTATTTGGAACTGCAAGTACCGGGACCAGTCTTTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2274 TCATCCCAGAACAATGCATTTGCACAAAATAAACCAACTGGCTTTGGGAATTTTGGAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2275 AGTACTAGCAGTGGAGGACTCTTTGGAACTACAAATACCACCTCTAATCCTTTTGGTAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2276 ACATCTGGCTCCCTTTTTGGGCCAAGTAGTTTTACAGCAGCACCTACAGGAACTACCATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2277 AAATTTAATCCTCCCACTGGTACAGATACTATGGTCAAAGCTGGAGTTAGCACTAACATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2278 AGTACAAAGCATCAGTGTATTACTGCTATGAAAGAATATGAAAGCAAGTCATTAGAGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2279 CTACGTTTGGAGGATTATCAGGCTAACCGGAAAGGCCCACAGAACCAAGTGGGAGGAGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2280 ACCACGGCTGGCTTATTTGGGTCTTCTCCAGCAACTTCCAGTGCAACAGGGCTCTTCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2281 TCCTCCACCACTAATTCAGCCTTTTCATATGGTCAGAACAAAACTGCCTTTGGAACTAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2282 ACAACTGGATTTGGAACAAATCCAGGTGGTCTCTTTGGCCAACAGAATCAACAGACTACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2283 AGTCTCTTCAGCAAACCATTTGGCCAGGCTACAACCACCCCGAATACTGGCTTTTCCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2284 GGTAATACCAGCACCCTTGGACAGCCAAGCACCAATACTATGGGCCTATTTGGAGTAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2285 CAAGCCTCACAACCAGGAGGTCTTTTTGGGACAGCTACAAACACCAGCACTGGGACAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2286 TTTGGGACAGGAACAGGTCTCTTTGGGCAGCCCAATACTGGATTTGGTGCAGTTGGTTCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2287 ACCCTGTTTGGCAATAACAAGCTTACAACTTTTGGAACCAGCACAACCAGTGCTCCTTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2288 TTTGGTACAACCAGTGGCGGGCTCTTCGGGTTTGGCACAAATAACAGTGGGAGCAGTATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2289 TTTGGAAGTAAGCCAGCAGCTGGAACTTTGGGAACTGGACTTGGTACAGGATTTGGAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2290 GCTTTGACAGATCCAAATGCTTCTGCTGCCCAGCAGGCTGTTCTCCAGCAGCACCTCAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2291 AGCCTAACATACTCACCCTTTGGAGACTCCCCCCTCTTCCGGAATCCTATGTCAGATCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2292 AAGAAGAAAGAAGAGAGACTGAAACCAACCAATCCAGCTGCTCAGAAAGCTCTTACAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2293 CCTACTCATTATAAACTTACACCTCGCCCTGCTACCAGAGTCAGGCCAAAGGCTTTGCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2294 ACAACAGGCACAGCCAAATCACATCTCTTTGATGGGCTGGATGACGATGAACCATCTCTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2295 GCCAACGGAGCATTCATGCCTAAAAAGAGCATCAAGAAGTTGGTTTTGAAAAATCTCAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2296 AATAGCAATCTCTTTTCTCCTGTTAATCATGATTCAGAAGATCTAGCTTCACCCTCTGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2297 TATCCAGAAAATGGAGAAAGATTTAGCTTCCTGAGCAAACCTGTTGATGAGAACAATCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2298 CAGGATGGAGAAGATGACTCTCTTGTATCACGATTTTACACTAATCCTATTGCCAAACCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2299 ATTCCACAAACTCCAGAGAGTGTTGGAAACAAAAATAACAGTAGCAGCAATGTGGAAGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2300 ACCATTGTTGCCTTGAACATGCGTGCTGCTTTGCGCAATGGATTGGAAGGAAGCAGTGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2301 GAGACGTCATTCCATGATGAGTCATTGCAAGATGACCGAGAAGAGATAGAAAATAATGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2302 TACCACATACACCCAGCAGGCATTGTTCTCACAAAAGTTGGTTATTACACTATCCCATCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2303 ATGGATGACCTTGCTAAAATTACCAACGAGAAGGGAGAATGCATTGTTTCTGACTTCACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2304 ATTGGTCGTAAAGGATATGGCTCAATCTATTTTGAAGGAGATGTGAATTTGACAAATCTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2305 AATTTGGATGATATTGTGCATATCCGAAGGAAAGAAGTTATTGTCTATGTAGATGATAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2306 CAAAAGCCACCTGTGGGTGAAGGGCTAAATAGGAAGGCTGAAGTTACTTTGGATGGAGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2307 TGGCCAACAGATAAAACATCCCGGTGTTTAATAAAGAGTCCAGATCGACTTGCTGATATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2308 AACTATGAGGGGAGATTAGAAGCAGTCTCAAGAAAGCAAGGGGCCCAATTCAAGGAGTAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2309 CGGCCTGAAACTGGTTCTTGGGTATTTAAGGTCTCCCATTTTTCCAAGTATGGCCTTCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2310 GATTCTGATGAAGAGGAGGAGGAACACCCACCCAAAACGACTTCAAAGAAGCTGAAGACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2311 GCCCCTTTGCCCCCTGCAGGCCAGGCAACCACTTTCCAGATGACTCTTAATGGCAAGCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2312 GCACCCCCACCTCAGGTAGAGAAGGGCAGAGAATGTGAATGCAGCTGTGGTAAAGAAGTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2313 AGCTGTGCAACCCTGGCTGCTATTTTTTACTCAAGATTTAAAGGGTTTTCTTGCTGTTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2314 GATCATTCTACAGATTGTAACTTTCAATTTCTCTCATTTGGACTTGTAATGTTTTGATCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2315 GTGATCAGCTTGAGATAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2316 >comp50_c1_seq10 len=3152 path=[124800:0-145 124946:146-1346 131552:1347-1397 126147:1398-1489 126239:1490-1630 126380:1631-2966 132231:2967-3151]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2317 CGGCGTGTGACGCAGTCAGGCCTCTGCGCGCTGCGCCCGAAGCGGCGGTCGGTGGCAGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2318 GCGGCGGCGACGACGGTTTTTCTGGAGGCCGCGCGGTGAGCGGCGGGTGACGGGCGGACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2319 TGGGCTCTCACTCCAGACGCACCGCTCTTTCTGAAGCAAACACTTGCTTTGAAGATGTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2320 AACAAATCATTTGGAACCCCCTTTGGGGGTAGTACAGGGGGCTTTGGCACAACGTCAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2321 TTTGGGCAAAATACTGGCTTTGGTACGACTAGTGGAGGAGCATTTGGAACATCTGCATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2322 GGTTCTAGCAACAATACTGGAGGCTTATTTGGAAATTCACAGACCAAACCAGGAGGATTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2323 TTTGGTACCAGTTCATTTAGCCAGCCAGCAACCTCCACAAGCACTGGGTTTGGGTTTGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2324 ACATCAACAGGAACATCAAATAGCTTATTTGGAACTGCAAGTACCGGGACCAGTCTTTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2325 TCATCCCAGAACAATGCATTTGCACAAAATAAACCAACTGGCTTTGGGAATTTTGGAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2326 AGTACTAGCAGTGGAGGACTCTTTGGAACTACAAATACCACCTCTAATCCTTTTGGTAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2327 ACATCTGGCTCCCTTTTTGGGCCAAGTAGTTTTACAGCAGCACCTACAGGAACTACCATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2328 AAATTTAATCCTCCCACTGGTACAGATACTATGGTCAAAGCTGGAGTTAGCACTAACATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2329 AGTACAAAGCATCAGTGTATTACTGCTATGAAAGAATATGAAAGCAAGTCATTAGAGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2330 CTACGTTTGGAGGATTATCAGGCTAACCGGAAAGGCCCACAGAACCAAGTGGGAGGAGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2331 ACCACGGCTGGCTTATTTGGGTCTTCTCCAGCAACTTCCAGTGCAACAGGGCTCTTCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2332 TCCTCCACCACTAATTCAGCCTTTTCATATGGTCAGAACAAAACTGCCTTTGGAACTAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2333 ACAACTGGATTTGGAACAAATCCAGGTGGTCTCTTTGGCCAACAGAATCAACAGACTACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2334 AGTCTCTTCAGCAAACCATTTGGCCAGGCTACAACCACCCCGAATACTGGCTTTTCCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2335 GGTAATACCAGCACCCTTGGACAGCCAAGCACCAATACTATGGGCCTATTTGGAGTAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2336 CAAGCCTCACAACCAGGAGGTCTTTTTGGGACAGCTACAAACACCAGCACTGGGACAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2337 TTTGGGACAGGAACAGGTCTCTTTGGGCAGCCCAATACTGGATTTGGTGCAGTTGGTTCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2338 ACCCTGTTTGGCAATAACAAGCTTACAACTTTTGGAACCAGCACAACCAGTGCTCCTTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2339 TTTGGTACAACCAGTGGCGGGCTCTTCGGTAACAAACCAACCCTGACTTTAGGAACCAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2340 ACAAACACTTCCAATTTTGGGTTTGGCACAAATAACAGTGGGAGCAGTATTTTTGGAAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2341 AAGCCAGCAGCTGGAACTTTGGGAACTGGACTTGGTACAGGATTTGGAACAGCTCTTGGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2342 GCTGGACAGGCATCTTTGTTTGGAAACAACCAACCTAAGATTGGAGGGCCTCTTGGTACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2343 GGAGCCTTTGGGGCCCCTGGATTTAATACTTCGACAGCCATTTTGGGCTTTGGCGCCCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2344 CAGGCCCCAGTAGCTTTGACAGATCCAAATGCTTCTGCTGCCCAGCAGGCTGTTCTCCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2345 CAGCACCTCAATAGCCTAACATACTCACCCTTTGGAGACTCCCCCCTCTTCCGGAATCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2346 ATGTCAGATCCTAAGAAGAAAGAAGAGAGACTGAAACCAACCAATCCAGCTGCTCAGAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2347 GCTCTTACAACACCTACTCATTATAAACTTACACCTCGCCCTGCTACCAGAGTCAGGCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2348 AAGGCTTTGCAAACAACAGGCACAGCCAAATCACATCTCTTTGATGGGCTGGATGACGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2349 GAACCATCTCTAGCCAACGGAGCATTCATGCCTAAAAAGAGCATCAAGAAGTTGGTTTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2350 AAAAATCTCAACAATAGCAATCTCTTTTCTCCTGTTAATCATGATTCAGAAGATCTAGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2351 TCACCCTCTGAGTATCCAGAAAATGGAGAAAGATTTAGCTTCCTGAGCAAACCTGTTGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2352 GAGAACAATCAGCAGGATGGAGAAGATGACTCTCTTGTATCACGATTTTACACTAATCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2353 ATTGCCAAACCCATTCCACAAACTCCAGAGAGTGTTGGAAACAAAAATAACAGTAGCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2354 AATGTGGAAGATACCATTGTTGCCTTGAACATGCGTGCTGCTTTGCGCAATGGATTGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2355 GGAAGCAGTGAAGAGACGTCATTCCATGATGAGTCATTGCAAGATGACCGAGAAGAGATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2356 GAAAATAATGCTTACCACATACACCCAGCAGGCATTGTTCTCACAAAAGTTGGTTATTAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2357 ACTATCCCATCTATGGATGACCTTGCTAAAATTACCAACGAGAAGGGAGAATGCATTGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2358 TCTGACTTCACCATTGGTCGTAAAGGATATGGCTCAATCTATTTTGAAGGAGATGTGAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2359 TTGACAAATCTAAATTTGGATGATATTGTGCATATCCGAAGGAAAGAAGTTATTGTCTAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2360 GTAGATGATAACCAAAAGCCACCTGTGGGTGAAGGGCTAAATAGGAAGGCTGAAGTTACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2361 TTGGATGGAGTTTGGCCAACAGATAAAACATCCCGGTGTTTAATAAAGAGTCCAGATCGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2362 CTTGCTGATATCAACTATGAGGGGAGATTAGAAGCAGTCTCAAGAAAGCAAGGGGCCCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2363 TTCAAGGAGTATCGGCCTGAAACTGGTTCTTGGGTATTTAAGGTCTCCCATTTTTCCAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2364 TATGGCCTTCAGGATTCTGATGAAGAGGAGGAGGAACACCCACCCAAAACGACTTCAAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2365 AAGCTGAAGACTGCCCCTTTGCCCCCTGCAGGCCAGGCAACCACTTTCCAGATGACTCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2366 AATGGCAAGCCTGCACCCCCACCTCAGGTAGAGAAGGGCAGAGAATGTGAATGCAGCTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2367 GGTAAAGAAGTCAGCTGTGCAACCCTGGCTGCTATTTTTTACTCAAGATTTAAAGGGTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2368 TCTTGCTGTTTGGATCATTCTACAGATTGTAACTTTCAATTTCTCTCATTTGGACTTGTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2369 ATGTTTTGATCAGTGATCAGCTTGAGATAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2370 >comp50_c1_seq11 len=5869 path=[124800:0-145 124946:146-1346 131552:1347-1397 126147:1398-1489 126239:1490-1630 126380:1631-2966 127716:2967-3733 128483:3734-4264 129014:4265-4440 129190:4441-4451 129201:4452-5101 129851:5102-5868]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2371 CGGCGTGTGACGCAGTCAGGCCTCTGCGCGCTGCGCCCGAAGCGGCGGTCGGTGGCAGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2372 GCGGCGGCGACGACGGTTTTTCTGGAGGCCGCGCGGTGAGCGGCGGGTGACGGGCGGACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2373 TGGGCTCTCACTCCAGACGCACCGCTCTTTCTGAAGCAAACACTTGCTTTGAAGATGTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2374 AACAAATCATTTGGAACCCCCTTTGGGGGTAGTACAGGGGGCTTTGGCACAACGTCAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2375 TTTGGGCAAAATACTGGCTTTGGTACGACTAGTGGAGGAGCATTTGGAACATCTGCATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2376 GGTTCTAGCAACAATACTGGAGGCTTATTTGGAAATTCACAGACCAAACCAGGAGGATTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2377 TTTGGTACCAGTTCATTTAGCCAGCCAGCAACCTCCACAAGCACTGGGTTTGGGTTTGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2378 ACATCAACAGGAACATCAAATAGCTTATTTGGAACTGCAAGTACCGGGACCAGTCTTTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2379 TCATCCCAGAACAATGCATTTGCACAAAATAAACCAACTGGCTTTGGGAATTTTGGAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2380 AGTACTAGCAGTGGAGGACTCTTTGGAACTACAAATACCACCTCTAATCCTTTTGGTAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2381 ACATCTGGCTCCCTTTTTGGGCCAAGTAGTTTTACAGCAGCACCTACAGGAACTACCATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2382 AAATTTAATCCTCCCACTGGTACAGATACTATGGTCAAAGCTGGAGTTAGCACTAACATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2383 AGTACAAAGCATCAGTGTATTACTGCTATGAAAGAATATGAAAGCAAGTCATTAGAGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2384 CTACGTTTGGAGGATTATCAGGCTAACCGGAAAGGCCCACAGAACCAAGTGGGAGGAGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2385 ACCACGGCTGGCTTATTTGGGTCTTCTCCAGCAACTTCCAGTGCAACAGGGCTCTTCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2386 TCCTCCACCACTAATTCAGCCTTTTCATATGGTCAGAACAAAACTGCCTTTGGAACTAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2387 ACAACTGGATTTGGAACAAATCCAGGTGGTCTCTTTGGCCAACAGAATCAACAGACTACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2388 AGTCTCTTCAGCAAACCATTTGGCCAGGCTACAACCACCCCGAATACTGGCTTTTCCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2389 GGTAATACCAGCACCCTTGGACAGCCAAGCACCAATACTATGGGCCTATTTGGAGTAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2390 CAAGCCTCACAACCAGGAGGTCTTTTTGGGACAGCTACAAACACCAGCACTGGGACAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2391 TTTGGGACAGGAACAGGTCTCTTTGGGCAGCCCAATACTGGATTTGGTGCAGTTGGTTCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2392 ACCCTGTTTGGCAATAACAAGCTTACAACTTTTGGAACCAGCACAACCAGTGCTCCTTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2393 TTTGGTACAACCAGTGGCGGGCTCTTCGGTAACAAACCAACCCTGACTTTAGGAACCAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2394 ACAAACACTTCCAATTTTGGGTTTGGCACAAATAACAGTGGGAGCAGTATTTTTGGAAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2395 AAGCCAGCAGCTGGAACTTTGGGAACTGGACTTGGTACAGGATTTGGAACAGCTCTTGGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2396 GCTGGACAGGCATCTTTGTTTGGAAACAACCAACCTAAGATTGGAGGGCCTCTTGGTACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2397 GGAGCCTTTGGGGCCCCTGGATTTAATACTTCGACAGCCATTTTGGGCTTTGGCGCCCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2398 CAGGCCCCAGTAGCTTTGACAGATCCAAATGCTTCTGCTGCCCAGCAGGCTGTTCTCCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2399 CAGCACCTCAATAGCCTAACATACTCACCCTTTGGAGACTCCCCCCTCTTCCGGAATCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2400 ATGTCAGATCCTAAGAAGAAAGAAGAGAGACTGAAACCAACCAATCCAGCTGCTCAGAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2401 GCTCTTACAACACCTACTCATTATAAACTTACACCTCGCCCTGCTACCAGAGTCAGGCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2402 AAGGCTTTGCAAACAACAGGCACAGCCAAATCACATCTCTTTGATGGGCTGGATGACGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2403 GAACCATCTCTAGCCAACGGAGCATTCATGCCTAAAAAGAGCATCAAGAAGTTGGTTTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2404 AAAAATCTCAACAATAGCAATCTCTTTTCTCCTGTTAATCATGATTCAGAAGATCTAGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2405 TCACCCTCTGAGTATCCAGAAAATGGAGAAAGATTTAGCTTCCTGAGCAAACCTGTTGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2406 GAGAACAATCAGCAGGATGGAGAAGATGACTCTCTTGTATCACGATTTTACACTAATCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2407 ATTGCCAAACCCATTCCACAAACTCCAGAGAGTGTTGGAAACAAAAATAACAGTAGCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2408 AATGTGGAAGATACCATTGTTGCCTTGAACATGCGTGCTGCTTTGCGCAATGGATTGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2409 GGAAGCAGTGAAGAGACGTCATTCCATGATGAGTCATTGCAAGATGACCGAGAAGAGATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2410 GAAAATAATGCTTACCACATACACCCAGCAGGCATTGTTCTCACAAAAGTTGGTTATTAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2411 ACTATCCCATCTATGGATGACCTTGCTAAAATTACCAACGAGAAGGGAGAATGCATTGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2412 TCTGACTTCACCATTGGTCGTAAAGGATATGGCTCAATCTATTTTGAAGGAGATGTGAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2413 TTGACAAATCTAAATTTGGATGATATTGTGCATATCCGAAGGAAAGAAGTTATTGTCTAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2414 GTAGATGATAACCAAAAGCCACCTGTGGGTGAAGGGCTAAATAGGAAGGCTGAAGTTACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2415 TTGGATGGAGTTTGGCCAACAGATAAAACATCCCGGTGTTTAATAAAGAGTCCAGATCGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2416 CTTGCTGATATCAACTATGAGGGGAGATTAGAAGCAGTCTCAAGAAAGCAAGGGGCCCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2417 TTCAAGGAGTATCGGCCTGAAACTGGTTCTTGGGTATTTAAGGTCTCCCATTTTTCCAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2418 TATGGCCTTCAGGATTCTGATGAAGAGGAGGAGGAACACCCACCCAAAACGACTTCAAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2419 AAGCTGAAGACTGCCCCTTTGCCCCCTGCAGGCCAGGCAACCACTTTCCAGATGACTCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2420 AATGGCAAGCCTGCACCCCCACCTCAGAGCCAGAGCCCAGAAGTGGAGCAGTTAGGCAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2421 GTTGTGGAACTGGACAGCGACATGGTAGATATCACCCAGGAGCCAGTTCCAGATTCTGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2422 TTAGAAGAGAGTGTGCCCGAGGATCAGGAGCCTGTGTCTGCTTCAACGCATATTGCATCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2423 TCACTGGGAATTAATCCACATGTTTTACAGATCATGAAAGCATCATTGCTTGTTGACGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2424 GAAGATGTAGATGCCATGGATCAACGCTTTGGTCACATCCCTTCCAAAGGAGAGACTGTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2425 CAGGAAATCTGTTCTCCTAGACTCCCCATTTCAGCCTCCCACTCATCAAAATCCCGCTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2426 ATAGTTGGTGGGTTGCTGCAATCAAAATTTGCAAGTGGAACTTTTCTTTCACCAAGTGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2427 TCCGTGCAAGAATGTCGCACTCCCAGGACATCATCTCGCATGAACATCCCATCCACATCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2428 CCCTGGTCTGTCCCTCTGCCCCTGGCCACTGTGTTCACAGTGCCCAGCCCAGCCCCTGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2429 GTTCAGCTAAAAACAGTGGGGATACGAAGGCAACCAGGCCTAGTCCCTCTTGAAAAATCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2430 ATTACATATGGCAAGGGGAAGCTCTTGATGGACATGGCCCTATTCATGGGACGTTCATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2431 CGGGTTGGTTGGGGTCCCAACTGGACTCTTGCTAATAGTGGAGAACAACTGCATGGCTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2432 CATGAACTGGAAAATCATCAGGTTGCCGATTCTATGGAATATGGATTCCTGCCCAATCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2433 GTAGCTGTTAAATCTCTATCTGAATCCCCATTCAAAGTTCATTTGGAAAAACTCGGCTTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2434 AGACAGAGGAAGCTGGATGAAGATCTGCAGTTATACCAGACACCTCTAGAGCTCAAATTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2435 AAACATAGCACTGTCCATGTAGATGAGCTGTGTCCTCTCATTGTCCCCAACCCTGGGGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2436 TCAGTCATTCATGATTATGCAGATTGGGTTAAGGACTCACCTGGAGATTTCCTGGAACTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2437 CCAATTGTGAAGCACTGGAGCCTGACATGGACATTATGTGAAGCCCTATGGGGCCACCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2438 AAGGAGCTTGACGGCCAGCTGGATGAGCCCAGCGAATACATTCAGACTCTGGAGCGTAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2439 AGAGCTTTTTCCCGCTGGCTGTCACATACCGCTGCACCTCAGATTGAAGAGGAAGTCTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2440 TTAACCCGCAGAGACAGTCCCGTAGAGGCTGTCTTCAGCTACCTCACGGGCAGTAGGATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2441 AGTGAGGCCTGTTGTCTGGCACAGCAGTCAGGTGATCATCGCCTTGCCCTTCTTCTGTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2442 CAGTTGGTGGGAAGCCAGTCAGTCCGGGAGCTGCTCACCATGCAGTTGGCCGATTGGCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2443 CAGCTCCAGGCTGACTCCTTCATCCACGATGAGCGATTGCGCATATTTGCCCTGTTGGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2444 GGAAAACCGGTGTGGCAGCTCTCAGAGCAGAAACAAATCAATGTTTGCTCCCAGCTAGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2445 TGGAAACGAACACTTGCTATCCATCTTTGGTATTTGCTTCCGCCAACCGCCTCCATTTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2446 AGGGCTCTCAGCATGTATGAAGAAGCATTTCAGAATACTCCTGAGGGTGATAAATATGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2447 TGCTCCCCTCTTCCTTCTTACCTGGAGGGCTGCGGCTGTATGGTAGAGGAAGAAAAAGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2448 TCCCGGAGACCACTTCAAGATGTTTGCTTTCATCTTCTAAAACTCTACAGTGACAGACAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2449 TATGAGCTCAATCAGCTATTAGAACCTCGAAGCATAACTGCAGATCCTTTGGACTACCGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2450 CTGAGCTGGCACCTTTGGGAAGTGCTACGTGCTCTTAACTATACCCATCTCTCAGAACAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2451 TGTGAAGGTGTGCTACAGGCCAGTTATGCTGGCCAACTGGAAAGTGAAGGACTCTGGGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2452 TGGGCCATCTTTGTCTTCCTACACATTGACAACTCGGGCATGCGTGAGAAGGCTGTTCGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2453 GAGCTGCTGACAAGGCACTGCCAACTGTCAGAGACCCCTGAGTCTTGGGCTAAGGAGGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2454 TTCCTCACACAGAAGCTTTGTGTGCCTGCTGAGTGGATTCATGAGGCCAAAGCAGTTCGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2455 GCACACATGGAATCCAATAAGCACTTGGAGGCCCTCTATTTATTTAAAGCTGGTCACTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2456 AACCGCTGCCACAAACTAGTCATTCGTCACCTAGCTTCTGATGCCATTATTAATGAGAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2457 TATGACTACCTGAAAGGATTCTTAGAAGATCTGGCACCTCCAGAGCGCAGCAGCCTCATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2458 CAGGACTGGGAAACATCTGGGCTCGTTTACCTGGATTATATTCGAGTGATTGAAATGCTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2459 CACCGTATTCAGCAGGTGGATTGCTCAGGTTATGAACTAGAGCACTTACATACCAAAGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2460 ACTTCACTGTGCAATCGGATAGAACAGATTCCGTGTTACAATGCCAAGGATCGCCTGGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2461 CAATCAGATATGGCCAAGCGGGTAGCCAACTTACTGCGGGTAGTGCTGAGCCTTCAGCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2462 GCTCCTGATGCCACCTCCAACTCAACGCCAGACCCTCAGCGAGTCCCTTTGCGTCTTTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2463 GCTCCCCACATTGGCAGGCTCCCCATGCCTGAGGACTACGCCTTGGAGGAACTGCGAGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2464 CTTACCCAGTCCTACCTTCGAGAACTGACTGTTGGGAGCCAGTGAGCTTGGCTCTTGCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2465 CCACACTCATGCCCACTCACACTCGCCACACCACAGTCCCCAGCACTGTTTTAGTTGACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2466 CTTTGCCAATCTCTGGGAATCCTCCATTCCTTTCTGCTGCATCTTCTAGTTATTCAGGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2467 TTTTCCTAATACTGAGCATAGCCTACAATAGCTCATAAGGGCTTCTGGAACAACAACAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2468 GAAGACAGGTCTCCATTTATCAACCTCAAGACCTTTTTTTTTCTTTTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2469 >comp50_c1_seq12 len=3101 path=[124800:0-145 124946:146-1346 126147:1347-1438 126239:1439-1579 126380:1580-2915 132231:2916-3100]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2470 CGGCGTGTGACGCAGTCAGGCCTCTGCGCGCTGCGCCCGAAGCGGCGGTCGGTGGCAGCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2471 GCGGCGGCGACGACGGTTTTTCTGGAGGCCGCGCGGTGAGCGGCGGGTGACGGGCGGACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2472 TGGGCTCTCACTCCAGACGCACCGCTCTTTCTGAAGCAAACACTTGCTTTGAAGATGTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2473 AACAAATCATTTGGAACCCCCTTTGGGGGTAGTACAGGGGGCTTTGGCACAACGTCAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2474 TTTGGGCAAAATACTGGCTTTGGTACGACTAGTGGAGGAGCATTTGGAACATCTGCATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2475 GGTTCTAGCAACAATACTGGAGGCTTATTTGGAAATTCACAGACCAAACCAGGAGGATTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2476 TTTGGTACCAGTTCATTTAGCCAGCCAGCAACCTCCACAAGCACTGGGTTTGGGTTTGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2477 ACATCAACAGGAACATCAAATAGCTTATTTGGAACTGCAAGTACCGGGACCAGTCTTTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2478 TCATCCCAGAACAATGCATTTGCACAAAATAAACCAACTGGCTTTGGGAATTTTGGAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2479 AGTACTAGCAGTGGAGGACTCTTTGGAACTACAAATACCACCTCTAATCCTTTTGGTAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2480 ACATCTGGCTCCCTTTTTGGGCCAAGTAGTTTTACAGCAGCACCTACAGGAACTACCATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2481 AAATTTAATCCTCCCACTGGTACAGATACTATGGTCAAAGCTGGAGTTAGCACTAACATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2482 AGTACAAAGCATCAGTGTATTACTGCTATGAAAGAATATGAAAGCAAGTCATTAGAGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2483 CTACGTTTGGAGGATTATCAGGCTAACCGGAAAGGCCCACAGAACCAAGTGGGAGGAGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2484 ACCACGGCTGGCTTATTTGGGTCTTCTCCAGCAACTTCCAGTGCAACAGGGCTCTTCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2485 TCCTCCACCACTAATTCAGCCTTTTCATATGGTCAGAACAAAACTGCCTTTGGAACTAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2486 ACAACTGGATTTGGAACAAATCCAGGTGGTCTCTTTGGCCAACAGAATCAACAGACTACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2487 AGTCTCTTCAGCAAACCATTTGGCCAGGCTACAACCACCCCGAATACTGGCTTTTCCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2488 GGTAATACCAGCACCCTTGGACAGCCAAGCACCAATACTATGGGCCTATTTGGAGTAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2489 CAAGCCTCACAACCAGGAGGTCTTTTTGGGACAGCTACAAACACCAGCACTGGGACAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2490 TTTGGGACAGGAACAGGTCTCTTTGGGCAGCCCAATACTGGATTTGGTGCAGTTGGTTCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2491 ACCCTGTTTGGCAATAACAAGCTTACAACTTTTGGAACCAGCACAACCAGTGCTCCTTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2492 TTTGGTACAACCAGTGGCGGGCTCTTCGGGTTTGGCACAAATAACAGTGGGAGCAGTATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2493 TTTGGAAGTAAGCCAGCAGCTGGAACTTTGGGAACTGGACTTGGTACAGGATTTGGAACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2494 GCTCTTGGTGCTGGACAGGCATCTTTGTTTGGAAACAACCAACCTAAGATTGGAGGGCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2495 CTTGGTACAGGAGCCTTTGGGGCCCCTGGATTTAATACTTCGACAGCCATTTTGGGCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2496 GGCGCCCCCCAGGCCCCAGTAGCTTTGACAGATCCAAATGCTTCTGCTGCCCAGCAGGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2497 GTTCTCCAGCAGCACCTCAATAGCCTAACATACTCACCCTTTGGAGACTCCCCCCTCTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2498 CGGAATCCTATGTCAGATCCTAAGAAGAAAGAAGAGAGACTGAAACCAACCAATCCAGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2499 GCTCAGAAAGCTCTTACAACACCTACTCATTATAAACTTACACCTCGCCCTGCTACCAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2500 GTCAGGCCAAAGGCTTTGCAAACAACAGGCACAGCCAAATCACATCTCTTTGATGGGCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2501 GATGACGATGAACCATCTCTAGCCAACGGAGCATTCATGCCTAAAAAGAGCATCAAGAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2502 TTGGTTTTGAAAAATCTCAACAATAGCAATCTCTTTTCTCCTGTTAATCATGATTCAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2503 GATCTAGCTTCACCCTCTGAGTATCCAGAAAATGGAGAAAGATTTAGCTTCCTGAGCAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2504 CCTGTTGATGAGAACAATCAGCAGGATGGAGAAGATGACTCTCTTGTATCACGATTTTAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2505 ACTAATCCTATTGCCAAACCCATTCCACAAACTCCAGAGAGTGTTGGAAACAAAAATAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2506 AGTAGCAGCAATGTGGAAGATACCATTGTTGCCTTGAACATGCGTGCTGCTTTGCGCAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2507 GGATTGGAAGGAAGCAGTGAAGAGACGTCATTCCATGATGAGTCATTGCAAGATGACCGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2508 GAAGAGATAGAAAATAATGCTTACCACATACACCCAGCAGGCATTGTTCTCACAAAAGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2509 GGTTATTACACTATCCCATCTATGGATGACCTTGCTAAAATTACCAACGAGAAGGGAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2510 TGCATTGTTTCTGACTTCACCATTGGTCGTAAAGGATATGGCTCAATCTATTTTGAAGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2511 GATGTGAATTTGACAAATCTAAATTTGGATGATATTGTGCATATCCGAAGGAAAGAAGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2512 ATTGTCTATGTAGATGATAACCAAAAGCCACCTGTGGGTGAAGGGCTAAATAGGAAGGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2513 GAAGTTACTTTGGATGGAGTTTGGCCAACAGATAAAACATCCCGGTGTTTAATAAAGAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2514 CCAGATCGACTTGCTGATATCAACTATGAGGGGAGATTAGAAGCAGTCTCAAGAAAGCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2515 GGGGCCCAATTCAAGGAGTATCGGCCTGAAACTGGTTCTTGGGTATTTAAGGTCTCCCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2516 TTTTCCAAGTATGGCCTTCAGGATTCTGATGAAGAGGAGGAGGAACACCCACCCAAAACG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2517 ACTTCAAAGAAGCTGAAGACTGCCCCTTTGCCCCCTGCAGGCCAGGCAACCACTTTCCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2518 ATGACTCTTAATGGCAAGCCTGCACCCCCACCTCAGGTAGAGAAGGGCAGAGAATGTGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2519 TGCAGCTGTGGTAAAGAAGTCAGCTGTGCAACCCTGGCTGCTATTTTTTACTCAAGATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2520 AAAGGGTTTTCTTGCTGTTTGGATCATTCTACAGATTGTAACTTTCAATTTCTCTCATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2521 GGACTTGTAATGTTTTGATCAGTGATCAGCTTGAGATAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2522 >comp50_c2_seq1 len=341 path=[132921:0-340]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2523 TGCAAGATAACCAATACATTTTAATGCAACAAAGCACAGCTCGGTACAAAAGTATGGGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2524 TCAGTAATTACTTGCTTCACGACTTATGTGGACACTACAAGATCTAAACATCAAAAGTTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2525 TATGTAGAATGCCTGGTTTACAAATACTTAGGTGTCAAAAGTTATGAAGGTAAGTTTATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2526 CATACCAAATATTTTGAGATACATCTCATGTAACCCTAAACTTGATATATAGCCAAGAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2527 GACGATGAATTTCTGATTCTCCAGCCTTTATCTCCTAAGTGACTAGATTATATGCATATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2528 CCAACACATACGGCCTGATTCTAAATTACTTAATTCCTTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2529 >comp50_c3_seq1 len=821 path=[117385:0-820]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2530 ACCGGGAATACTATAAACATTTAATTTTATTTTTTTAAGAAAGTACTTCAGAAAGAGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2531 AATAATCTAGATCATTTATATATATATATATATTTTTTAATAAAAACCTTTACATAATCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2532 TCATGCATAAAGACCAAGGGGTGGCCATATTGTCTGTGACAGCCCCAAATATCAGCTGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2533 TCAGGCTAGTACCTGGGACTTCCTATAGCCAGCAGCAATGTGGTAAAGGCCTTCTCTATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2534 TGCCCCTAGGGCGCATCCAGACCTGTCTCAGTGACAGTTTTATCTTCTTGGAAATGTTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2535 TGGCTAGATGGGAGGGCAGGGAGGAACATCCTTGACATTCTTCATCTAAACTCCTCTGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2536 AAATCGAAGACGACGACGACTGATGATCAAGGGCCTGAGCGAATCTGGAGCTTCTCAGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2537 TGGTTCTCGGTGGCTTGGGGCCACTGCGCATGATAGTATGGTGTCCAAAGGATACACAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2538 GCATGAGTAAAGGCCTTGAAGATCTCTACCTCTATGGCAGACAGCCCTTCTATCTTAAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2539 TTACCAAAGAACAAGGTCCAACTCTCTTTTGACTCCAAAATCCACCGTTACTGAGAAATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2540 TACTTGAGGGACAAATCTGTAAGGAAGGTCAGTCAGTCATATGCCAGATGTCTGTCAAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2541 AGTCACGGTACAAAAGGATCGCAGTGGTGGAGGTTAGATGCTGGCATGGGGTGAGAGCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2542 GAACGCTGGGTGTGGAAAAGAATTCCCTAGGTTTTGGGAGGTTCTGCCAAAGAGGTTTTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2543 TTGACCATTTTTCAAAAGAAAAAAAAAAAAAAAAAAAAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2544 >comp51_c0_seq1 len=518 path=[152504:0-517]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2545 ATCAAAATCACTCAAATGAAGACCACCAGGGGGTACAACAAAATCCCCCCCCCCCCCAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2546 TTTGGTTAAGACAACCATCATTACGCTGGAAAAGGAAAAAAATCTGTCTAGCTCTTAGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2547 CATACTTTGTGACACCTCAAAGTTCTGAAATTCTAAGGATACTGTGAGGGAGACCTGGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2548 AGAAAGTGATGATGTCAGCCCCACACCTGACTCAGAGCACCTGAGAAAAAGTGATCATAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2549 AAGTTAAAGTGTTACTGTTAATCAAACACACTGTGCTGCCATCTTGCACTTCCTTCTCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2550 ACTCACTTGCACACTTCTAAAAAGTCACCACAGGGAAGTGCACTGAGCTGGCTGAATCAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2551 CATTCCAGGCCATAGTACCCCACCACACCCACACCCACACAGACATGCAACATGCACACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2552 CCCATGCACATGCATGCCCTCACCTCCTCTCCTGCACACACATAATACACAAATGCACAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2553 GTAACACACAACACACACACACCCAGCACTCATACTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2554 >comp51_c1_seq1 len=281 path=[155151:0-280]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2555 GCCAGTAGAAATGTGGACATGATAAGCCATCGTGTGGCCAAACTAGAGGAGACAAGGAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2556 GCTTTTCATCCTCTGTTTTGGAGCCAGGCCATGTCAGTAGCTTTCAGTGGAAAGTCTGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2557 GGGACATTTGACTGTCCATGGCTGTAGAGCAGGCACACTGTCCAGGCCGCCTAACTGTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2558 GACCAGCACTAATGAAATGTCAGTGTCCTGCACTCACTGTCTGCATGTTGTTCAAATGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2559 TTTCTGCATGGTGCTTTGACTTTGGCTGTCCCATGACCCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2560 >comp51_c2_seq1 len=8756 path=[143081:0-113 143195:114-310 143392:311-1851 144933:1852-4357 147439:4358-4676 147758:4677-5459 148541:5460-6055 149137:6056-6291 149373:6292-6637 157051:6638-6638 149720:6639-7142 157057:7143-7159 157094:7160-7162 150244:7163-7237 150319:7238-7959 151042:7960-8755]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2561 GGCGCGCTGACGTCTCCTTCGGACACGTCGGCGGCGGCACCTGGAGCCGGATGTGCCAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2562 ATGGCTGCGGCTGCTGCTGGGAACGCGCTAGTTCCCCCTACTGCCGCCGCCGTCGCCGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2563 TGGGTTTCAGTTCGCGGCGCCTGAGAAGCCAACCACAGCTCACAGGCACAAATTAAAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2564 AAGCTCTACTCTGCCCCCTTGATAAGCAGCATCTCCTTGTGGAAAAGACTCCAACATGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2565 GCCACCACCTCAGGCAGTCCCGTCTGGGGTGGCTGGACCACCCCCAGCTGGGAATCCTCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2566 GAGCATGTTCTGGGCCAACAGCCCTTACAGGAAGCCAGCCAATAATGCACCAGTGGCTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2567 CATAACACGCCCATTGCAGCCAGTAACGGATCCGTTTGCTTTTAATAGACAGACTCTTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2568 AAACACACCAGTAGGAAGTTCATCCAAAAGCAGCCTGCCCAATTTGCCTGGCCCAGCCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2569 CTCTGTTTTTTCTCAGTGGCCTGGTTTGCCTGTGACTCCCACAAATGCTGGGGATAGCTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2570 CACAGGATTGCATGAGCCTCTGTCAGGAACTCTGTCACAGCCTAGAGCAGATGCCAGTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2571 ATTTCCTCCTGCATCTACCCCTTCTTCACTCCCTGGGCTGGAGGTGAGCAGGAATGCTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2572 GGCTGATCCCAGCTCAGGACATGAAGTCCAGATGCTGCCACATTCAGCTCACTACATTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2573 AGGAGTGGGTCCTGAGCAGCCTCTCGGGGGCCAAATGAATGACAGTGGGTCCGGGCCTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2574 CCAACCCATGAATAGGCATGCCCCCCATGATGGTGCCGTGACCCACGCAGCATCTCCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2575 CCTCCCTCAGCCACAGATGCCAGGTCAGTGGGGGCCTGCACAAGGAGGCCCTCAGCCCTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2576 CTATCAGCATCACTCACCCTACCTGGAGGGACCTGTTCAGAACATGGGGCTCCAGGCTGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2577 CAGCTTGCCCCATTTTCCCCCTCCATCTAGTCTACACCAGGGACCTGGCCATGAGTCTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2578 TGCCCCACAAACATTTACTCCAGCATCCTTGGCCAGTGGTGAAGGGAATGAGATAGTTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2579 CCAGCAAAGTAAAAATCACCCATTGAGTAGCTTCCCCCCTAAACACACTTTTGAGCAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2580 TTCCAGAATTGGGAATATGTGGGCAAGCCCAGAGTTGAAGCAGAATCCGGGAGTGAATAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2581 AGAGCATCTGCTAGACCCTGCCCATGTCAATCCCTTCACTCAGGGAAATAGTCCTGAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2582 CCAGGCGCATCATCCCCCAGTGGCAGCAACTAACCATGCCCTGCAAGAAGCAGCCTCTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2583 AGCTCTCTCAATGTTTTTTCAAGGGGAAGAGACAGAGAATGAGGAAAATCTCTCATCTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2584 AAAAGCAGGCCTCGATAAGAGATTGAACTTGGATAGCTTTTCTTCTACCTCCAGACTGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2585 CCATCCACCACCACCTGGAGCTAGTGGTGTCTACCAGGCCTTTCCTAGAGGCCCTAGCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2586 TGAGGCTGCGCAGGAAGGAGATGCGCAACCTTATTTTTCGCAGTCTGTGGGCGTCCGTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2587 TGACAAACAGAGCACTGTGCCCCCTGCTAATGATGCATGGGGTGATGTTCCGGGGACCGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2588 GACCCGCTGTGCCAGTGGGCCACAGTGTGAGAATGTTGAGAACTTAGAATTTGTTCAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2589 TCAAGAAGTTTTGCCCCGTGAGACCCTGAGTGTGGATCCCTTCCCCCTGAGTGATCAGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2590 CCGATATGGGCCCCTTCCTGGGCCAGCTGCCTCCAGGCCTGCTACTGTGGGCCTCACCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2591 AGGTGGGGGGCTAAATCTTGAGGCCCCAGACACACCACTGCACCCTACACGACCTGACAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2592 TGTGTCATCCAGCTACAGCAGCCATAGCCACAGAAGTCCTCCTGGGTCAGCCAGACCCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2593 AGAATTGGTGGGCACATTCATTCAGCAAGAAGTTGGGAAACTTGAAGATGATACTTCAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2594 GAGTTTTTTTAAGCAAATTGATTCTTCTCCTGTTGGAGGTGAAACAGATGAGGTGACTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2595 GAGCCAAAATTGCTGCAGCAGTCTGTCCCAGCCTTCAACCCCAAGCCCTCCAAAACCTAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2596 AGGAGTATTCCAAACAAGTGCAAACAGTTCTTTTGAGCCAGTAAAATCCCACTTGGTTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2597 AGTGAAACCAGTTGAAGCAGATCGTGCCAACATGGTGGTTGAAGTGAGAGGGACCCAATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2598 CTGTCCGAAGAAGCGCAGGGCAGCTGTTGCACCACCTGATGCTACCTCAGGAAACCTGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2599 ACAGCCACCAGACAACATGGAGACCCCGTGTGCACCTCAGGCCTGCCCTTTGCCTCTTAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2600 CACCACTGGAGAGGCTGGGCAACTGGTTTCAAACACGGCAGGGACACCCCTGGATACTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2601 GCGCCCAGTGCCTGATAAGAGGCCCTCAGCCAGGGCCCAGGGACCTGTGAAGTGTGAGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2602 CCCAGCAACAACTCTGTGGGCACAAAATGAGCTGCCAGATTTTGGTGGCAATGTCCTTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2603 AGCCCCTGCTGCCCCTGCACTTTATGTTCCTGTAAAACCAAAACCTTCAGAGGTTGTTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2604 TCATCCAGAAAAGGGAATGTCTGGACAGAAGGCCTGGAAACAAGGGTCTGTGCCACCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2605 GCAGAACCAAGACCCTCCTGGTGCTTCTGAGAACCTTGAGAACCCTCCCAAGGTAGGAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2606 AGAGGAGGCCCTTCCAGTGCAGGCAAGTTCTGGTTATGCGAGTTTGCTTTCTTCGCCACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2607 CACTGAATCTTTGCACAATCAACCTGTCCTGATTGCTCAGCCTGATCAAAGCTATAATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2608 GGCTCAGCCTATTAATTTTTCTGTGTCCTTACTGAATCCTAATGAGAAGAATCAGTCCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2609 GGGAGATGCTGTGGTGGGGGAGAGATCCATAGTGAGCAACAACTGGGCTCTCGGTGGTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2610 TCCTGAAGAACGTGCTGCTCTGTCTGGAGTTCCAGCCAGTGCTGTCACTGGCGCGTCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2611 GCCTAGCAGTATCCCCCAGAATTGTGCCCCTCAAGGTTCGGGGTCTTCTGAAATGATTGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2612 TAGCCAGTCTGCCAGTTGGTTGGTTCAACAGCTATCCCCTCAAACCCCTCAAAGTCCGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2613 TCCAAATGCAGAAAAGGGCCCTTCCGAGTTTGTTAGTAGCCCTGCTGGCAATACAAGTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2614 GATGCTAGTTCCACCTGCAAGCAGTACTTTGGTTCCTAACAGTAATAAGGCAAAGCACTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2615 TAGTAACCAGGAAGAAGCTGTTGGCGCCCTAGACTTCACATTAAATAGAACTTTGGAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2616 TCCTGTGAGAATGTACAGCCCATCTCCTTCAGATGGCCCAGCTTCTCAGCAGCCTCTTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2617 CAATCATCCCAGACAATCTGGGCCTGGGCTGCATAACCAGGATCATTTCTACCAGCAGGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2618 AACAAAAGATGCTCAGGACCAGCATAGACTAGAAAGAGCCCAGCCAGAGCTGGTGCCTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2619 TCGGCCACAGAATTCTCCCCAAGTGCCCCAAGCATCGTGTCCAGAGCCTTCAAATCCTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2620 AAGCCCACCCACACAAGGACAGTCTGAAAGCTTGGCCCAGCCACCAGCAAGTCCAGCTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2621 AGTCAACACAGGCCAGCTGCTGCCTCAGCCACCACAGGCTTCCAGTGCATCCGTTACATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2622 TACCAACTCCAGCCAGGCAGCTGTGCGGTCAGAGCAGCTGTGGCTACACCCACCACCTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2623 TAATACTTTTGGCCCAGCACCTCAAGACTTGGCATCCTACTACTATTACAGACCCCTGTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2624 TGATGCCTACCAGTCTCAGTACCCTTCACCGTACCCGTCAGATCCTGGGACAGCCTCGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2625 GTACTACCAGGATATGTATGGCCTGTATGAGCCTCGTTACAGACCCTATGACAGCTCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2626 ATCTGCTTATGCCGAGAACCACCGCTATTCTGAGCCTGAGCGGCCCAGCTCCCGTGCAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2627 TCACTATTCCGACCAGCTTGCTCCCAGGCAAGGATATCCTGAAGGATACTATAATTCCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2628 GAGTGGATGGAGCAGTCACAGTGATTACTATGCAAATTATTACTCTGGCCAGTATGATTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2629 TGGAGACCCCAGCCGCTGGGATCGTTACTATGGGTCTCGCCTTAGGGATCCTCGCACCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2630 GGACCGGAGGTACTGGTATGACTCTGAACATGACCCATACAGGAAGGACCACTATGCTTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2631 CAGTGACAGGCCTGAGAAATGTGATGATCACTGGAGGTATGACCCTCGCTTCACTGGGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2632 CTTCGACGATGACGCTGAGATCCACAGGGACCCCTATGGAGAAGAAGCAGACAGACGCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2633 CATCCACAGTGAGCACTCGGCACGGAGCCTGCGCAGCACTCACAGTCTGCCCAGCCGCCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2634 CAGCAGCCTCAGCTCCCATTCACACCAGAGTCAGATTTACAGAAGCCACCATGTGACTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2635 CGGTTCCTTTGAGGCCCCTCATGCCCCAGGCTCATTTCATGGTGATTATGCCTATGGCAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2636 ATATGCCAGCAATTTCAGCGGTGCCCATGGTTTTCCAGAGTACAGCTACCCTGCAGACAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2637 CTCCTGGCCTGCTGTGGAGCAAGTTCCATCAAGACCGACCTCTCCTGAGAAGTTTACGGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2638 GCCTCATGTCTGTGCCAGGTTTGGTCCTGGTGGTCAGCTCCTTAAAGTGATTCCCAACCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2639 GCCTTCAGAAGGACAGCCTGCACTGGTGGAGATCCACAGCTTAGAGACCTTGCTGCAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2640 CACACCTGAGCAGGAAGAGATGCGCTCCTTCCCAGGACCTCTCGGCAAAGATGATACCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2641 CAAAGTAGATGTTATTAACTTTGCACAGAACAAAGCAACAAAATGTTTGCAGAATGAAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2642 TTTAATTGATAAAGAGTCTGCAAGTCTTCTTTGGAAATTCATTATTCTGTTATGCAGACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2643 GAATGGGACTGTTGTGGGAACAGACATTGCAGAGCTTTTGTTACGGGACCATAGAACTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2644 ATGGCTTCCTGGGAAGTCACCCAATGAGGCAAACCTGATAGATTTTACCAATGAGGCTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2645 GGAACAAGTGGAAGAGGAGGAGTCAGGGGAGGCCCAGCTCTCATTTCTCACAGACAGTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2646 GACAGTGACCACCAGCGTGCTGGAGAAGGAGACTGAGCGGTTCCGTGAGCTCTTGCTGTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2647 TGGCCGGAAGAAGGATGCTCTGGAGTCTGCCATGAAAAATGGCTTATGGGGTCATGCTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2648 TCTGCTTGCAAGTAAGATGGACAGCCGGACACATGCCCGTGTCATGACCAGGTTTGCCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2649 CAGTCTTCCAATCAATGACCCCCTGCAGACTGTCTACCAGCTCATGTCTGGACGGATGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2650 TGCTGCATCCACGTGTTGTGGCGATGAGAAGTGGGGAGATTGGAGGCCACATCTTGCAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2651 GGTTTTGTCCAACCTGAACAACAACATGGATGTTGAATCTAGGACCATGGCTACGATGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2652 TGATACTCTAGCATCAAAAGGCCTGTTGGATGCTGCACACTTCTGCTACCTGATGGCCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2653 GGTTGGATTTGGGGTTTATACAAAGAAAACTACAAAACTTGTCTTGATAGGCTCAAATCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2654 CAGTTTGCCCTTTTTAAAGTTTGCCACCAATGAAGCCATTCAAAGGACGGAGGCTTATGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2655 GTATGCTCAGTCCCTTGGGGCACATACCTGTTCCTTACCTAACTTCCAGGTGTTTAAATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2656 CATCTACTTGTGCCGCCTGGCTGAAATGGGACTTGCCACACAGGCCTTCCACTACTGCGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2657 AGTAATAGCCAAGAGTGTCCTGACACAGCCTGGTGCATACTCTCCAGTACTGATTAGCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2658 GTTGACTCAGATGGCTTCCCAGTTACGCCTCTTCGATCCTCAACTGAAGGAGAAGCCAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2659 AGAGGAGTCCTTTGTGGAGCCTGCCTGGTTGGTGCAGCTGCAGCACGTGGAGAGGCAGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2660 CCAGGAGGGCACTGTGCTGTGGAGCCAGGATGGAACTGAACCCCAGCAGTGTCGCATTAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2661 ATCGGGCTCTGAGGTGGAGCAGTCAGATGGCCCTGGACTCAACCAGCAGGCAGGGCCACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2662 GGCCGACAACCCTCTACTGATGCCAAGCACTGAGCCTTTGATGCATGGCGTGCAACTGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2663 GCCCACAGCTCCTCAGACATTGCCTGATGGCCAGCCTGCTCACCTTTCCAGGGTGCCGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2664 GTTCCCAGTGCCAATGTCTCGTGGGCCCCTGGAGCTGAGTCCTGCCTATGGACCCCCAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2665 ATCTGCACTTGGCTTCCCAGAATCCTCCAGATCTGATCCTGCAGTGCTGCATCCTGGGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2666 GGCCCTGCCACCCACTACACTAAGTCTCCAGGAAAGTGGGCTTCCACCCCAGGAGGCCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2667 AAGTCCAGACCCAGAAATGGTGCCACGGGGCTCACCTGTCAGACACTCCCCTCCGGAGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2668 CAGTCAAGAGGAGTTTGGCGAGAGCTTCGCTGACCCGGGCTCTTCCAGAACAGCACAGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2669 CTTGGAAACCTCCCCAGTGTGGGATCTTGGCAGCTCCAGTTTGACACGTGCACCATCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2670 GACATCTGATTCTGAAGGGAAGAAACCTGCACAGGCTGTCAAAAAGGAGCCCAAGGAGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2671 CAAGAAGACTGAGTCCTGGTTCTCTCGTTGGCTGCCTGGAAAAAAAAGGACAGAAGCTTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2672 TCTACCAGATGACAAGAACAAATCAATTGTTTGGGATGAAAAGAAAAACCAGTGGGTGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2673 TTTGAATGAACCAGAGGAGGAGAAGAAGGCTCCACCCCCACCTCCAACATCGTTCCCCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2674 GGTTCCCCAGGTGGCTCCCACTGGGCCTGCAGGACCACCCACGGCCTCCGTGAATGTGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2675 TTCTAGAAAAGCAGGTGGGTCCAGAGCTCGCTATGTGGATGTTCTAAACCCAAGTGGAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2676 ACAGCGGAGTGAACCAGCTCTTGCTCCTGCAGATTTCTTTGCTCCTCTCGCCCCACTGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2677 AATTCCTTCTAACTTATTTGTACCAAACCCAGATGCAGAAGAGCCACAACCTGCAGATGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2678 GACTGGCTGTAGGGGACAGGCACCAGCTGGGACTCAGTCTAAGGCAGAGTCCACCCTGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2679 ACCCAAGGTGGGAAGTTCTACAGTATCAGCCCCTGGACCTGAGCTCTTACCCTCCAAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2680 AGATGGCTCCCAAGGAGGAGAGGCTCCTGGAGACCATTGTCCTACAGGGGCCCCTCATGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2681 TGGGTCTGTGCCCTTTTACAACCCTGCTCAGTTGGTGCAGGCTTCTGTCACCTCGGGAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2682 TTCAAGGCCAGGGAGGATTGGCCAAAGAAAATATGCGGCATTGAACTAGGATTGCTGCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2683 GATTCTTATTTGGAACCCTGAGATGATTAGATAACTGTTCTTCACCAAGAACCAACTAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2684 TGCCTCAGGTCTCGTGGATCCCAGATGGACATGGCAGTAACTCAGAGCCGGTCATACTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2685 GTGTCTCCTTCCTTGCAGCCTATGTATATGAATGATTGAAAAATTGATTTCAAGGTTCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2686 TTCAAATGCTGGATAGAATGAATCTAATTCAAAGTCTTTTATGTAAAAGAACAATGTTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2687 TTTTTTAGTCACTTTAGACAAATTAAGGTTTGAGCCACTTGAGAATATCCCCGCAGAGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2688 GCTAGGCAGGGATTCACTACAGGAGAGCACAGTTACTTGGACACCAAGGCCTTTCTCACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2689 TGAGAAATGGTGCAAACCAACCAGGGATCCTTAGGCTACTGAGAAGGCTGTCTGCTTACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2690 TGGAGAGGACTGACTGCTGGGATGTCTGGCCTAAGAGGAGCCTCAAACTGCACTGGGCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2691 CTGTGCCTTGTCCTGTGAACTGGGGAGTACATGCCAGCTCCTCAAAGGGTCACCAGATGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2692 CAGCGGCTCCCAGGCTGGGGAGGAAGTGGTTACAAGGGCATGTCTCTCCAACATTTCCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2693 CCTCACTCCATTTTCTGTGGCCTCATTAGTGCTGGGTGCGTTTTTTTTTGCTCCGAGCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2694 TCCGTCATGGCTCAGTCACTGGGGAGAGCCCCAGGGAGCTGATATTCTGAAGCTGCTGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2695 CTGATTAACCAGGTCAAAAACTGGCTGTGTGCTGCAACGTACTGCCCTCCTAGCCAGGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2696 TCTGTATGGAGCCCTCTAGCTGACTCAATGTCACCTGCAGACAGCACTTAAAGCCTTGGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2697 GGTATCTTGGAGTGGCTTACGGTGTCCTAGCGCACACTCTGGAACCTTGCATCTCTACCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2698 CAAAGCCCACCAGGGACCTTCAGCAGCGACTCACTGGCTCACCCATATCACTTCAAGGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2699 CTGCCACCACATAAGAGTCAAAGCTTTAAGGCTTCACTGACTGTTCCTAAAACTATCCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2700 ACACTCTAAAGAGGAAGGGAAAGAGAGTTAAATATTTAAAAATCAGCAGGTAGAAAACAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2701 AAATGGTTTGTTTGGTATTAAATTTAGAAATTGTAGAACATGGAATTAGTACAGCCCTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2702 CCGGTTTTCTGGTTCCTTGCATCATCTAGGAAAGACTCACAGAATGGCTTCCAGGACGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2703 CCATAGATGAGTGTACTTGGACCCTCCTGTTCCTGTCATTAAGAAAGGCCTGTCCCTGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2704 GGTCAGTAGCAACTTGTGTCCTTGCTGGGACCAGGCAGGACCCTTGCCTCTGGTTCAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2705 CTGCCCAGGCTCTGTGTTGACTGCCAACCACTTTGGATTCAAGAAGCTTCCTCCCTGGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2706 GCTGCTATTTTTCCAAAATTCACATTGTTAAATAAAATATTTTGGGCTCTCAAGTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2707 >comp51_c2_seq2 len=633 path=[153228:0-198 151836:199-258 157094:259-261 153450:262-632]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2708 TTTTTTCCTTTTCCGGGGGGATGGGGGGTTTTTTTAACAAAAGGGGGGGGGGGGGGCATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2709 TGATGCTACCTCTGGCTGTCTTCATTTGAGTGATATTGATTCTAATGGCATCATAAAGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2710 TTTAAAACCAGCTGACAGCTTGGAGCAATGGAGCATGCTGATCTTCATGTCTGTATCTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2711 TGTGTTCTTGCTGTTCCATAGCTCTCGCGTTGTAGCTCTCTGAGCTCGCTCTCACAGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2712 GTGAGCCGGCATTTCCATCAGGTACCTGTGGCTGGTGGCTCCCTCCACGGGGCTGGCTAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2713 GTAGCTCCCATATGTCCCTTAGAGAGTCTGTCATCCTCTTTACTTTGTCACTAACCCCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2714 GTCTTAACCAAGCATCATGTGGGCAAAGATGCAGTTTTCCTTTATTAGATGGCCTGGGTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2715 TAGATACGCTGGTGGTGGACTTGCCTCACAGGGTTCAGAGTGCTCAGGGAGCTTCCTAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2716 TCTGCTCCTTGTGAAGTGGCCTGACCCCTTCCCTACCATGATCTCCTGAGTTAAGACACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2717 ACTTGGAAAGAAAGATTTCTTCTTGCTGATGAGGCTTGAGGAAGTCTGTTTGTAGCCAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2718 AGAAATGTGGACGTGATAAGCCATCGTGTGGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2719 >comp51_c2_seq3 len=1855 path=[153228:0-198 151836:199-258 157094:259-261 150244:262-336 150319:337-1058 151042:1059-1854]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2720 TTTTTTCCTTTTCCGGGGGGATGGGGGGTTTTTTTAACAAAAGGGGGGGGGGGGGGCATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2721 TGATGCTACCTCTGGCTGTCTTCATTTGAGTGATATTGATTCTAATGGCATCATAAAGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2722 TTTAAAACCAGCTGACAGCTTGGAGCAATGGAGCATGCTGATCTTCATGTCTGTATCTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2723 TGTGTTCTTGCTGTTCCATAGCTCTCGCGTTGTAGCTCTCTGAGCTCGCTCTCACAGGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2724 GTGAGCCGGCATTTCCATCAGGCTCCTGGAGACCATTGTCCTACAGGGGCCCCTCATGGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2725 GGGTCTGTGCCCTTTTACAACCCTGCTCAGTTGGTGCAGGCTTCTGTCACCTCGGGAAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2726 TCAAGGCCAGGGAGGATTGGCCAAAGAAAATATGCGGCATTGAACTAGGATTGCTGCTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2727 ATTCTTATTTGGAACCCTGAGATGATTAGATAACTGTTCTTCACCAAGAACCAACTAGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2728 GCCTCAGGTCTCGTGGATCCCAGATGGACATGGCAGTAACTCAGAGCCGGTCATACTGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2729 TGTCTCCTTCCTTGCAGCCTATGTATATGAATGATTGAAAAATTGATTTCAAGGTTCCTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2730 TCAAATGCTGGATAGAATGAATCTAATTCAAAGTCTTTTATGTAAAAGAACAATGTTTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2731 TTTTTAGTCACTTTAGACAAATTAAGGTTTGAGCCACTTGAGAATATCCCCGCAGAGAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2732 CTAGGCAGGGATTCACTACAGGAGAGCACAGTTACTTGGACACCAAGGCCTTTCTCACCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2733 GAGAAATGGTGCAAACCAACCAGGGATCCTTAGGCTACTGAGAAGGCTGTCTGCTTACCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2734 GGAGAGGACTGACTGCTGGGATGTCTGGCCTAAGAGGAGCCTCAAACTGCACTGGGCAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2735 TGTGCCTTGTCCTGTGAACTGGGGAGTACATGCCAGCTCCTCAAAGGGTCACCAGATGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2736 AGCGGCTCCCAGGCTGGGGAGGAAGTGGTTACAAGGGCATGTCTCTCCAACATTTCCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2737 CTCACTCCATTTTCTGTGGCCTCATTAGTGCTGGGTGCGTTTTTTTTTGCTCCGAGCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2738 CCGTCATGGCTCAGTCACTGGGGAGAGCCCCAGGGAGCTGATATTCTGAAGCTGCTGATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2739 TGATTAACCAGGTCAAAAACTGGCTGTGTGCTGCAACGTACTGCCCTCCTAGCCAGGAGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2740 CTGTATGGAGCCCTCTAGCTGACTCAATGTCACCTGCAGACAGCACTTAAAGCCTTGGTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2741 GTATCTTGGAGTGGCTTACGGTGTCCTAGCGCACACTCTGGAACCTTGCATCTCTACCCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2742 AAAGCCCACCAGGGACCTTCAGCAGCGACTCACTGGCTCACCCATATCACTTCAAGGAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2743 TGCCACCACATAAGAGTCAAAGCTTTAAGGCTTCACTGACTGTTCCTAAAACTATCCTTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2744 CACTCTAAAGAGGAAGGGAAAGAGAGTTAAATATTTAAAAATCAGCAGGTAGAAAACATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2745 AATGGTTTGTTTGGTATTAAATTTAGAAATTGTAGAACATGGAATTAGTACAGCCCTTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2746 CGGTTTTCTGGTTCCTTGCATCATCTAGGAAAGACTCACAGAATGGCTTCCAGGACGTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2747 CATAGATGAGTGTACTTGGACCCTCCTGTTCCTGTCATTAAGAAAGGCCTGTCCCTGTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2748 GTCAGTAGCAACTTGTGTCCTTGCTGGGACCAGGCAGGACCCTTGCCTCTGGTTCAACCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2749 TGCCCAGGCTCTGTGTTGACTGCCAACCACTTTGGATTCAAGAAGCTTCCTCCCTGGGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2750 CTGCTATTTTTCCAAAATTCACATTGTTAAATAAAATATTTTGGGCTCTCAAGTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2751 >comp51_c2_seq4 len=7220 path=[143081:0-113 143195:114-310 143392:311-1851 144933:1852-4357 147439:4358-4676 147758:4677-5459 148541:5460-6055 149137:6056-6291 149373:6292-6637 157051:6638-6638 149720:6639-7142 157057:7143-7159 151836:7160-7219]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2752 GGCGCGCTGACGTCTCCTTCGGACACGTCGGCGGCGGCACCTGGAGCCGGATGTGCCAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2753 ATGGCTGCGGCTGCTGCTGGGAACGCGCTAGTTCCCCCTACTGCCGCCGCCGTCGCCGGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2754 TGGGTTTCAGTTCGCGGCGCCTGAGAAGCCAACCACAGCTCACAGGCACAAATTAAAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2755 AAGCTCTACTCTGCCCCCTTGATAAGCAGCATCTCCTTGTGGAAAAGACTCCAACATGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2756 GCCACCACCTCAGGCAGTCCCGTCTGGGGTGGCTGGACCACCCCCAGCTGGGAATCCTCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2757 GAGCATGTTCTGGGCCAACAGCCCTTACAGGAAGCCAGCCAATAATGCACCAGTGGCTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2758 CATAACACGCCCATTGCAGCCAGTAACGGATCCGTTTGCTTTTAATAGACAGACTCTTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2759 AAACACACCAGTAGGAAGTTCATCCAAAAGCAGCCTGCCCAATTTGCCTGGCCCAGCCCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2760 CTCTGTTTTTTCTCAGTGGCCTGGTTTGCCTGTGACTCCCACAAATGCTGGGGATAGCTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2761 CACAGGATTGCATGAGCCTCTGTCAGGAACTCTGTCACAGCCTAGAGCAGATGCCAGTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2762 ATTTCCTCCTGCATCTACCCCTTCTTCACTCCCTGGGCTGGAGGTGAGCAGGAATGCTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2763 GGCTGATCCCAGCTCAGGACATGAAGTCCAGATGCTGCCACATTCAGCTCACTACATTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2764 AGGAGTGGGTCCTGAGCAGCCTCTCGGGGGCCAAATGAATGACAGTGGGTCCGGGCCTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2765 CCAACCCATGAATAGGCATGCCCCCCATGATGGTGCCGTGACCCACGCAGCATCTCCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2766 CCTCCCTCAGCCACAGATGCCAGGTCAGTGGGGGCCTGCACAAGGAGGCCCTCAGCCCTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2767 CTATCAGCATCACTCACCCTACCTGGAGGGACCTGTTCAGAACATGGGGCTCCAGGCTGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2768 CAGCTTGCCCCATTTTCCCCCTCCATCTAGTCTACACCAGGGACCTGGCCATGAGTCTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2769 TGCCCCACAAACATTTACTCCAGCATCCTTGGCCAGTGGTGAAGGGAATGAGATAGTTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2770 CCAGCAAAGTAAAAATCACCCATTGAGTAGCTTCCCCCCTAAACACACTTTTGAGCAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2771 TTCCAGAATTGGGAATATGTGGGCAAGCCCAGAGTTGAAGCAGAATCCGGGAGTGAATAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2772 AGAGCATCTGCTAGACCCTGCCCATGTCAATCCCTTCACTCAGGGAAATAGTCCTGAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2773 CCAGGCGCATCATCCCCCAGTGGCAGCAACTAACCATGCCCTGCAAGAAGCAGCCTCTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2774 AGCTCTCTCAATGTTTTTTCAAGGGGAAGAGACAGAGAATGAGGAAAATCTCTCATCTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2775 AAAAGCAGGCCTCGATAAGAGATTGAACTTGGATAGCTTTTCTTCTACCTCCAGACTGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2776 CCATCCACCACCACCTGGAGCTAGTGGTGTCTACCAGGCCTTTCCTAGAGGCCCTAGCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2777 TGAGGCTGCGCAGGAAGGAGATGCGCAACCTTATTTTTCGCAGTCTGTGGGCGTCCGTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2778 TGACAAACAGAGCACTGTGCCCCCTGCTAATGATGCATGGGGTGATGTTCCGGGGACCGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2779 GACCCGCTGTGCCAGTGGGCCACAGTGTGAGAATGTTGAGAACTTAGAATTTGTTCAGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2780 TCAAGAAGTTTTGCCCCGTGAGACCCTGAGTGTGGATCCCTTCCCCCTGAGTGATCAGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2781 CCGATATGGGCCCCTTCCTGGGCCAGCTGCCTCCAGGCCTGCTACTGTGGGCCTCACCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2782 AGGTGGGGGGCTAAATCTTGAGGCCCCAGACACACCACTGCACCCTACACGACCTGACAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2783 TGTGTCATCCAGCTACAGCAGCCATAGCCACAGAAGTCCTCCTGGGTCAGCCAGACCCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2784 AGAATTGGTGGGCACATTCATTCAGCAAGAAGTTGGGAAACTTGAAGATGATACTTCAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2785 GAGTTTTTTTAAGCAAATTGATTCTTCTCCTGTTGGAGGTGAAACAGATGAGGTGACTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2786 GAGCCAAAATTGCTGCAGCAGTCTGTCCCAGCCTTCAACCCCAAGCCCTCCAAAACCTAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2787 AGGAGTATTCCAAACAAGTGCAAACAGTTCTTTTGAGCCAGTAAAATCCCACTTGGTTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2788 AGTGAAACCAGTTGAAGCAGATCGTGCCAACATGGTGGTTGAAGTGAGAGGGACCCAATA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2789 CTGTCCGAAGAAGCGCAGGGCAGCTGTTGCACCACCTGATGCTACCTCAGGAAACCTGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2790 ACAGCCACCAGACAACATGGAGACCCCGTGTGCACCTCAGGCCTGCCCTTTGCCTCTTAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2791 CACCACTGGAGAGGCTGGGCAACTGGTTTCAAACACGGCAGGGACACCCCTGGATACTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2792 GCGCCCAGTGCCTGATAAGAGGCCCTCAGCCAGGGCCCAGGGACCTGTGAAGTGTGAGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2793 CCCAGCAACAACTCTGTGGGCACAAAATGAGCTGCCAGATTTTGGTGGCAATGTCCTTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2794 AGCCCCTGCTGCCCCTGCACTTTATGTTCCTGTAAAACCAAAACCTTCAGAGGTTGTTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2795 TCATCCAGAAAAGGGAATGTCTGGACAGAAGGCCTGGAAACAAGGGTCTGTGCCACCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2796 GCAGAACCAAGACCCTCCTGGTGCTTCTGAGAACCTTGAGAACCCTCCCAAGGTAGGAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2797 AGAGGAGGCCCTTCCAGTGCAGGCAAGTTCTGGTTATGCGAGTTTGCTTTCTTCGCCACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2798 CACTGAATCTTTGCACAATCAACCTGTCCTGATTGCTCAGCCTGATCAAAGCTATAATTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2799 GGCTCAGCCTATTAATTTTTCTGTGTCCTTACTGAATCCTAATGAGAAGAATCAGTCCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2800 GGGAGATGCTGTGGTGGGGGAGAGATCCATAGTGAGCAACAACTGGGCTCTCGGTGGTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2801 TCCTGAAGAACGTGCTGCTCTGTCTGGAGTTCCAGCCAGTGCTGTCACTGGCGCGTCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2802 GCCTAGCAGTATCCCCCAGAATTGTGCCCCTCAAGGTTCGGGGTCTTCTGAAATGATTGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2803 TAGCCAGTCTGCCAGTTGGTTGGTTCAACAGCTATCCCCTCAAACCCCTCAAAGTCCGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2804 TCCAAATGCAGAAAAGGGCCCTTCCGAGTTTGTTAGTAGCCCTGCTGGCAATACAAGTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2805 GATGCTAGTTCCACCTGCAAGCAGTACTTTGGTTCCTAACAGTAATAAGGCAAAGCACTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2806 TAGTAACCAGGAAGAAGCTGTTGGCGCCCTAGACTTCACATTAAATAGAACTTTGGAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2807 TCCTGTGAGAATGTACAGCCCATCTCCTTCAGATGGCCCAGCTTCTCAGCAGCCTCTTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2808 CAATCATCCCAGACAATCTGGGCCTGGGCTGCATAACCAGGATCATTTCTACCAGCAGGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2809 AACAAAAGATGCTCAGGACCAGCATAGACTAGAAAGAGCCCAGCCAGAGCTGGTGCCTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2810 TCGGCCACAGAATTCTCCCCAAGTGCCCCAAGCATCGTGTCCAGAGCCTTCAAATCCTGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2811 AAGCCCACCCACACAAGGACAGTCTGAAAGCTTGGCCCAGCCACCAGCAAGTCCAGCTTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2812 AGTCAACACAGGCCAGCTGCTGCCTCAGCCACCACAGGCTTCCAGTGCATCCGTTACATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2813 TACCAACTCCAGCCAGGCAGCTGTGCGGTCAGAGCAGCTGTGGCTACACCCACCACCTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2814 TAATACTTTTGGCCCAGCACCTCAAGACTTGGCATCCTACTACTATTACAGACCCCTGTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2815 TGATGCCTACCAGTCTCAGTACCCTTCACCGTACCCGTCAGATCCTGGGACAGCCTCGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2816 GTACTACCAGGATATGTATGGCCTGTATGAGCCTCGTTACAGACCCTATGACAGCTCAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2817 ATCTGCTTATGCCGAGAACCACCGCTATTCTGAGCCTGAGCGGCCCAGCTCCCGTGCAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2818 TCACTATTCCGACCAGCTTGCTCCCAGGCAAGGATATCCTGAAGGATACTATAATTCCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2819 GAGTGGATGGAGCAGTCACAGTGATTACTATGCAAATTATTACTCTGGCCAGTATGATTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2820 TGGAGACCCCAGCCGCTGGGATCGTTACTATGGGTCTCGCCTTAGGGATCCTCGCACCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2821 GGACCGGAGGTACTGGTATGACTCTGAACATGACCCATACAGGAAGGACCACTATGCTTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2822 CAGTGACAGGCCTGAGAAATGTGATGATCACTGGAGGTATGACCCTCGCTTCACTGGGAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2823 CTTCGACGATGACGCTGAGATCCACAGGGACCCCTATGGAGAAGAAGCAGACAGACGCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2824 CATCCACAGTGAGCACTCGGCACGGAGCCTGCGCAGCACTCACAGTCTGCCCAGCCGCCG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2825 CAGCAGCCTCAGCTCCCATTCACACCAGAGTCAGATTTACAGAAGCCACCATGTGACTGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2826 CGGTTCCTTTGAGGCCCCTCATGCCCCAGGCTCATTTCATGGTGATTATGCCTATGGCAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2827 ATATGCCAGCAATTTCAGCGGTGCCCATGGTTTTCCAGAGTACAGCTACCCTGCAGACAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2828 CTCCTGGCCTGCTGTGGAGCAAGTTCCATCAAGACCGACCTCTCCTGAGAAGTTTACGGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2829 GCCTCATGTCTGTGCCAGGTTTGGTCCTGGTGGTCAGCTCCTTAAAGTGATTCCCAACCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2830 GCCTTCAGAAGGACAGCCTGCACTGGTGGAGATCCACAGCTTAGAGACCTTGCTGCAGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2831 CACACCTGAGCAGGAAGAGATGCGCTCCTTCCCAGGACCTCTCGGCAAAGATGATACCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2832 CAAAGTAGATGTTATTAACTTTGCACAGAACAAAGCAACAAAATGTTTGCAGAATGAAAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2833 TTTAATTGATAAAGAGTCTGCAAGTCTTCTTTGGAAATTCATTATTCTGTTATGCAGACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2834 GAATGGGACTGTTGTGGGAACAGACATTGCAGAGCTTTTGTTACGGGACCATAGAACTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2835 ATGGCTTCCTGGGAAGTCACCCAATGAGGCAAACCTGATAGATTTTACCAATGAGGCTGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2836 GGAACAAGTGGAAGAGGAGGAGTCAGGGGAGGCCCAGCTCTCATTTCTCACAGACAGTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2837 GACAGTGACCACCAGCGTGCTGGAGAAGGAGACTGAGCGGTTCCGTGAGCTCTTGCTGTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2838 TGGCCGGAAGAAGGATGCTCTGGAGTCTGCCATGAAAAATGGCTTATGGGGTCATGCTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2839 TCTGCTTGCAAGTAAGATGGACAGCCGGACACATGCCCGTGTCATGACCAGGTTTGCCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2840 CAGTCTTCCAATCAATGACCCCCTGCAGACTGTCTACCAGCTCATGTCTGGACGGATGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2841 TGCTGCATCCACGTGTTGTGGCGATGAGAAGTGGGGAGATTGGAGGCCACATCTTGCAAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2842 GGTTTTGTCCAACCTGAACAACAACATGGATGTTGAATCTAGGACCATGGCTACGATGGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2843 TGATACTCTAGCATCAAAAGGCCTGTTGGATGCTGCACACTTCTGCTACCTGATGGCCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2844 GGTTGGATTTGGGGTTTATACAAAGAAAACTACAAAACTTGTCTTGATAGGCTCAAATCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2845 CAGTTTGCCCTTTTTAAAGTTTGCCACCAATGAAGCCATTCAAAGGACGGAGGCTTATGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2846 GTATGCTCAGTCCCTTGGGGCACATACCTGTTCCTTACCTAACTTCCAGGTGTTTAAATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2847 CATCTACTTGTGCCGCCTGGCTGAAATGGGACTTGCCACACAGGCCTTCCACTACTGCGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2848 AGTAATAGCCAAGAGTGTCCTGACACAGCCTGGTGCATACTCTCCAGTACTGATTAGCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2849 GTTGACTCAGATGGCTTCCCAGTTACGCCTCTTCGATCCTCAACTGAAGGAGAAGCCAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2850 AGAGGAGTCCTTTGTGGAGCCTGCCTGGTTGGTGCAGCTGCAGCACGTGGAGAGGCAGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2851 CCAGGAGGGCACTGTGCTGTGGAGCCAGGATGGAACTGAACCCCAGCAGTGTCGCATTAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2852 ATCGGGCTCTGAGGTGGAGCAGTCAGATGGCCCTGGACTCAACCAGCAGGCAGGGCCACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2853 GGCCGACAACCCTCTACTGATGCCAAGCACTGAGCCTTTGATGCATGGCGTGCAACTGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2854 GCCCACAGCTCCTCAGACATTGCCTGATGGCCAGCCTGCTCACCTTTCCAGGGTGCCGAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2855 GTTCCCAGTGCCAATGTCTCGTGGGCCCCTGGAGCTGAGTCCTGCCTATGGACCCCCAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2856 ATCTGCACTTGGCTTCCCAGAATCCTCCAGATCTGATCCTGCAGTGCTGCATCCTGGGCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2857 GGCCCTGCCACCCACTACACTAAGTCTCCAGGAAAGTGGGCTTCCACCCCAGGAGGCCAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2858 AAGTCCAGACCCAGAAATGGTGCCACGGGGCTCACCTGTCAGACACTCCCCTCCGGAGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2859 CAGTCAAGAGGAGTTTGGCGAGAGCTTCGCTGACCCGGGCTCTTCCAGAACAGCACAGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2860 CTTGGAAACCTCCCCAGTGTGGGATCTTGGCAGCTCCAGTTTGACACGTGCACCATCTTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2861 GACATCTGATTCTGAAGGGAAGAAACCTGCACAGGCTGTCAAAAAGGAGCCCAAGGAGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2862 CAAGAAGACTGAGTCCTGGTTCTCTCGTTGGCTGCCTGGAAAAAAAAGGACAGAAGCTTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2863 TCTACCAGATGACAAGAACAAATCAATTGTTTGGGATGAAAAGAAAAACCAGTGGGTGAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2864 TTTGAATGAACCAGAGGAGGAGAAGAAGGCTCCACCCCCACCTCCAACATCGTTCCCCAG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2865 GGTTCCCCAGGTGGCTCCCACTGGGCCTGCAGGACCACCCACGGCCTCCGTGAATGTGTT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2866 TTCTAGAAAAGCAGGTGGGTCCAGAGCTCGCTATGTGGATGTTCTAAACCCAAGTGGAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2867 ACAGCGGAGTGAACCAGCTCTTGCTCCTGCAGATTTCTTTGCTCCTCTCGCCCCACTGCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2868 AATTCCTTCTAACTTATTTGTACCAAACCCAGATGCAGAAGAGCCACAACCTGCAGATGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2869 GACTGGCTGTAGGGGACAGGCACCAGCTGGGACTCAGTCTAAGGCAGAGTCCACCCTGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2870 ACCCAAGGTGGGAAGTTCTACAGTATCAGCCCCTGGACCTGAGCTCTTACCCTCCAAACC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2871 AGATGGCTCCCAAGGAGGAGAGCTCTCGCGTTGTAGCTCTCTGAGCTCGCTCTCACAGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2872 AGTGAGCCGGCATTTCCATC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2873 >comp51_c2_seq5 len=1755 path=[154406:0-236 150319:237-958 151042:959-1754]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2874 ACAACCCTGCTCAGTTGGTGCAGAATTGGCAGAACAAAAACAAATCATGTCTGCAGTGCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2875 GTGGGCTAGGAAATGCTGAGCAGCAGGAACTTGGCACATACAGAAGGTCTTGCTTACACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2876 TGAAGCTAACACAGAGTCTGCCCATTTGTTATTGATCTGTGGGGTTATCCTGTAGCTCCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2877 TCGCTGGACAGCCTCTGGGCATGGACACATGTAGGTCATTGCTGTTCCTTTTGTTCTAGG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2878 CTTCTGTCACCTCGGGAAATTCAAGGCCAGGGAGGATTGGCCAAAGAAAATATGCGGCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2879 TGAACTAGGATTGCTGCTGGATTCTTATTTGGAACCCTGAGATGATTAGATAACTGTTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2880 TCACCAAGAACCAACTAGCTGCCTCAGGTCTCGTGGATCCCAGATGGACATGGCAGTAAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2881 TCAGAGCCGGTCATACTGTGTGTCTCCTTCCTTGCAGCCTATGTATATGAATGATTGAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2882 AATTGATTTCAAGGTTCCTTTCAAATGCTGGATAGAATGAATCTAATTCAAAGTCTTTTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2883 TGTAAAAGAACAATGTTTCTTTTTTAGTCACTTTAGACAAATTAAGGTTTGAGCCACTTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2884 AGAATATCCCCGCAGAGAGGCTAGGCAGGGATTCACTACAGGAGAGCACAGTTACTTGGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2885 CACCAAGGCCTTTCTCACCTGAGAAATGGTGCAAACCAACCAGGGATCCTTAGGCTACTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2886 AGAAGGCTGTCTGCTTACCTGGAGAGGACTGACTGCTGGGATGTCTGGCCTAAGAGGAGC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2887 CTCAAACTGCACTGGGCAACTGTGCCTTGTCCTGTGAACTGGGGAGTACATGCCAGCTCC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2888 TCAAAGGGTCACCAGATGGCAGCGGCTCCCAGGCTGGGGAGGAAGTGGTTACAAGGGCAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2889 GTCTCTCCAACATTTCCAGCCTCACTCCATTTTCTGTGGCCTCATTAGTGCTGGGTGCGT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2890 TTTTTTTTGCTCCGAGCTTTCCGTCATGGCTCAGTCACTGGGGAGAGCCCCAGGGAGCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2891 ATATTCTGAAGCTGCTGATCTGATTAACCAGGTCAAAAACTGGCTGTGTGCTGCAACGTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2892 CTGCCCTCCTAGCCAGGAGTCTGTATGGAGCCCTCTAGCTGACTCAATGTCACCTGCAGA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2893 CAGCACTTAAAGCCTTGGTGGTATCTTGGAGTGGCTTACGGTGTCCTAGCGCACACTCTG
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2894 GAACCTTGCATCTCTACCCCAAAGCCCACCAGGGACCTTCAGCAGCGACTCACTGGCTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2895 CCCATATCACTTCAAGGAGCTGCCACCACATAAGAGTCAAAGCTTTAAGGCTTCACTGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2896 TGTTCCTAAAACTATCCTTACACTCTAAAGAGGAAGGGAAAGAGAGTTAAATATTTAAAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2897 ATCAGCAGGTAGAAAACATAAATGGTTTGTTTGGTATTAAATTTAGAAATTGTAGAACAT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2898 GGAATTAGTACAGCCCTTCCCGGTTTTCTGGTTCCTTGCATCATCTAGGAAAGACTCACA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2899 GAATGGCTTCCAGGACGTTCCATAGATGAGTGTACTTGGACCCTCCTGTTCCTGTCATTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2900 AGAAAGGCCTGTCCCTGTGGGTCAGTAGCAACTTGTGTCCTTGCTGGGACCAGGCAGGAC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2901 CCTTGCCTCTGGTTCAACCCTGCCCAGGCTCTGTGTTGACTGCCAACCACTTTGGATTCA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2902 AGAAGCTTCCTCCCTGGGAGCTGCTATTTTTCCAAAATTCACATTGTTAAATAAAATATT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2903 TTGGGCTCTCAAGTA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2904 >comp52_c0_seq1 len=261 path=[157215:0-260]
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2905 GGGGCATGTGTGTTAGAATACGTGTAGAAGTCAGAGGGTAACTTGTAGGAGTTGGTTCTC
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2906 TCCCTCTCCCATGTGAGAATGACCTTGGTAGCAAACACCCTTAACAAATGACCCATCTCT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2907 CTGTCCTCAGCCACAATGATTTTATAACACTTTCTCTGTAAGAATTCAATTTAAGAATAA
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2908 TTTCCTTCCCTTTATTACCTTCCTACTTCAGGCTAAGAACAAGGAACCAAAGTATCTACT
f6b8155ab12a Add test cases
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2909 CAACAAACTCAGAGAAAGACA