# HG changeset patch
# User jjohnson
# Date 1382447552 14400
# Node ID d6a7b8497a7bf341bd69bb5e920450d4e53724c1

Uploaded

diff -r 000000000000 -r d6a7b8497a7b tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Oct 22 09:12:32 2013 -0400
@@ -0,0 +1,24 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="shear" version="0.2.4">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://vk.cs.umn.edu/SHEAR/downloads/shear-v0.2.4-compiled.tar.gz</action>
+                <action type="move_directory_files">
+                    <source_directory>.</source_directory>
+                    <destination_directory>$INSTALL_DIR</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="SHEAR_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+SHEAR: Sample Heterogeneity Estimation and Assembly by Reference
+
+SHEAR is an assembly tool that accounts for heterogeneous variants by estimating their representative percentages and allowing for selective assembly of sample subpopulations. By utilizing structural variant detection algorithms, SHEAR also offers improved performance in the form of a stronger ability to handle difficult structural variant types and improved computational efficiency.
+
+http://vk.cs.umn.edu/SHEAR/
+        </readme>
+    </package>
+</tool_dependency>