Mercurial > repos > jjohnson > package_shear_0_2_4
comparison tool_dependencies.xml @ 0:d6a7b8497a7b draft default tip
Uploaded
| author | jjohnson |
|---|---|
| date | Tue, 22 Oct 2013 09:12:32 -0400 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:d6a7b8497a7b |
|---|---|
| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="shear" version="0.2.4"> | |
| 4 <install version="1.0"> | |
| 5 <actions> | |
| 6 <action type="download_by_url">http://vk.cs.umn.edu/SHEAR/downloads/shear-v0.2.4-compiled.tar.gz</action> | |
| 7 <action type="move_directory_files"> | |
| 8 <source_directory>.</source_directory> | |
| 9 <destination_directory>$INSTALL_DIR</destination_directory> | |
| 10 </action> | |
| 11 <action type="set_environment"> | |
| 12 <environment_variable name="SHEAR_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable> | |
| 13 </action> | |
| 14 </actions> | |
| 15 </install> | |
| 16 <readme> | |
| 17 SHEAR: Sample Heterogeneity Estimation and Assembly by Reference | |
| 18 | |
| 19 SHEAR is an assembly tool that accounts for heterogeneous variants by estimating their representative percentages and allowing for selective assembly of sample subpopulations. By utilizing structural variant detection algorithms, SHEAR also offers improved performance in the form of a stronger ability to handle difficult structural variant types and improved computational efficiency. | |
| 20 | |
| 21 http://vk.cs.umn.edu/SHEAR/ | |
| 22 </readme> | |
| 23 </package> | |
| 24 </tool_dependency> |