Mercurial > repos > jjohnson > package_rsem_1_1_17

comparison tool_dependencies.xml @ 1:7d060ea51c6f default tip

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RSEM needs samtools in relative path to install
author Jim Johnson <jj@umn.edu>
date Thu, 05 Dec 2013 08:39:51 -0600
parents 9fa1826ae6d4
children
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0:9fa1826ae6d4 1:7d060ea51c6f
3 <package name="rsem" version="1.1.17"> 3 <package name="rsem" version="1.1.17">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions>
6 <action type="download_by_url">http://deweylab.biostat.wisc.edu/rsem/src/rsem-1.1.17.tar.gz</action> 6 <action type="download_by_url">http://deweylab.biostat.wisc.edu/rsem/src/rsem-1.1.17.tar.gz</action>
7 <action type="shell_command">make</action> 7 <action type="shell_command">make</action>
8 8 <action type="make_directory">$INSTALL_DIR/bin/sam</action>
9 <action type="move_file">
10 <source>sam/samtools</source>
11 <destination>$INSTALL_DIR/bin/sam</destination>
12 </action>
9 <action type="move_file"> 13 <action type="move_file">
10 <source>convert-sam-for-rsem</source> 14 <source>convert-sam-for-rsem</source>
11 <destination>$INSTALL_DIR/bin</destination> 15 <destination>$INSTALL_DIR/bin</destination>
12 </action> 16 </action>
13 <action type="move_file"> 17 <action type="move_file">