annotate tool_dependencies.xml @ 1:822c8d19cfe3 default tip

Download binary executables if avaiablable, otherwise compile from src
author Jim Johnson <jj@umn.edu>
date Wed, 06 Nov 2013 14:17:36 -0600
parents b05b788e3989
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="kent" version="latest">
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4 <install version="1.0">
1
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
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5 <actions_group>
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6
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
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7 <actions os="linux" architecture="x86_64">
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8 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/blat/blat</action>
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9 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/blat/gfServer</action>
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10 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/blat/gfClient</action>
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11 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/addCols</action>
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12 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/ameme</action>
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13 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/autoDtd</action>
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14 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/autoSql</action>
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15 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/autoXml</action>
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16 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/ave</action>
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17 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/aveCols</action>
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18 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/axtChain</action>
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19 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/axtSort</action>
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20 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/axtSwap</action>
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21 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/axtToMaf</action>
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22 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/axtToPsl</action>
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23 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedClip</action>
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24 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedCommonRegions</action>
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25 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedCoverage</action>
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26 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedExtendRanges</action>
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27 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedGeneParts</action>
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28 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedGraphToBigWig</action>
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29 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedIntersect</action>
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30 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedItemOverlapCount</action>
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31 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedPileUps</action>
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32 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedRemoveOverlap</action>
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33 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedRestrictToPositions</action>
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34 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedSort</action>
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35 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedToBigBed</action>
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36 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedToExons</action>
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37 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedToGenePred</action>
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38 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedToPsl</action>
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39 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedWeedOverlapping</action>
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40 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigBedInfo</action>
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41 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigBedNamedItems</action>
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42 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigBedSummary</action>
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43 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigBedToBed</action>
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44 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigAverageOverBed</action>
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45 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigCorrelate</action>
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46 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigInfo</action>
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47 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigMerge</action>
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48 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigSummary</action>
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49 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigToBedGraph</action>
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50 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bigWigToWig</action>
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51 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/blastToPsl</action>
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52 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/blastXmlToPsl</action>
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53 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/calc</action>
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54 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/catDir</action>
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55 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/catUncomment</action>
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56 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainAntiRepeat</action>
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57 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainFilter</action>
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58 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainMergeSort</action>
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59 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainNet</action>
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60 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainPreNet</action>
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61 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainSort</action>
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62 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainSplit</action>
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63 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainStitchId</action>
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64 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainSwap</action>
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65 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainToAxt</action>
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66 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chainToPsl</action>
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67 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/checkAgpAndFa</action>
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68 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/checkCoverageGaps</action>
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69 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/checkHgFindSpec</action>
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70 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/checkTableCoords</action>
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71 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chopFaLines</action>
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72 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chromGraphFromBin</action>
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73 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/chromGraphToBin</action>
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74 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/colTransform</action>
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75 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/countChars</action>
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76 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/crTreeIndexBed</action>
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77 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/crTreeSearchBed</action>
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78 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/dbSnoop</action>
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79 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/dbTrash</action>
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80 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/estOrient</action>
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81 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faCmp</action>
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82 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faCount</action>
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83 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faFilter</action>
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84 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faFilterN</action>
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85 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faFrag</action>
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86 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faNoise</action>
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87 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faOneRecord</action>
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88 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faPolyASizes</action>
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89 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faRandomize</action>
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90 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faRc</action>
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91 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faSize</action>
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92 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faSomeRecords</action>
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93 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faSplit</action>
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94 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faToFastq</action>
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95 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faToTab</action>
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parents: 0
diff changeset
96 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faToTwoBit</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
97 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/faTrans</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
98 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/fastqToFa</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
99 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/featureBits</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
100 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/fetchChromSizes</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
101 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/findMotif</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
102 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/gapToLift</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
103 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/genePredCheck</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
104 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/genePredHisto</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
105 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/genePredSingleCover</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
106 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/genePredToBed</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
107 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/genePredToFakePsl</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
108 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/genePredToGtf</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
109 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/genePredToMafFrames</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
110 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/gff3ToGenePred</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
111 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/gff3ToPsl</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
112 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/gmtime</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
113 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/gtfToGenePred</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
114 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/headRest</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
115 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hgFindSpec</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
116 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hgGcPercent</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
117 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hgLoadBed</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
118 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hgLoadOut</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
119 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hgLoadWiggle</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
120 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hgTrackDb</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
121 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hgWiggle</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
122 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hgsql</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
123 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hgsqldump</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
124 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/htmlCheck</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
125 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/hubCheck</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
126 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/ixIxx</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
127 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/lavToAxt</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
128 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/lavToPsl</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
129 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/ldHgGene</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
130 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/liftOver</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
131 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/liftOverMerge</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
132 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/liftUp</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
133 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/linesToRa</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
134 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/localtime</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
135 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafAddIRows</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
136 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafAddQRows</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
137 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafCoverage</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
138 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafFetch</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
139 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafFilter</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
140 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafFrag</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
141 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafFrags</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
142 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafGene</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
143 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafMeFirst</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
144 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafOrder</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
145 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafRanges</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
146 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafSpeciesList</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
147 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafSpeciesSubset</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
148 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafSplit</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
149 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafSplitPos</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
150 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafToAxt</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
151 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafToPsl</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
152 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mafsInRegion</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
153 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/makeTableList</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
154 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/maskOutFa</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
155 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mktime</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
156 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/mrnaToGene</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
157 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/netChainSubset</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
158 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/netClass</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
159 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/netFilter</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
160 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/netSplit</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
161 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/netSyntenic</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
162 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/netToAxt</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
163 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/netToBed</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
164 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/newProg</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
165 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/nibFrag</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
166 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/nibSize</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
167 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/oligoMatch</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
168 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/overlapSelect</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
169 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/paraFetch</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
170 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/paraSync</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
171 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/positionalTblCheck</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
172 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslCDnaFilter</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
173 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslCat</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
174 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslCheck</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
175 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslDropOverlap</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
176 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslFilter</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
177 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslHisto</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
178 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslLiftSubrangeBlat</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
179 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslMap</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
180 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslMrnaCover</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
181 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslPairs</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
182 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslPartition</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
183 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslPretty</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
184 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslRecalcMatch</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
185 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslReps</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
186 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslSelect</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
187 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslSort</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
188 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslStats</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
189 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslSwap</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
190 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslToBed</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
191 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslToChain</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
192 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslToPslx</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
193 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/pslxToFa</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
194 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/qaToQac</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
195 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/qacAgpLift</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
196 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/qacToQa</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
197 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/qacToWig</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
198 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/raSqlQuery</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
199 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/raToLines</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
200 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/raToTab</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
201 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/randomLines</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
202 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/rmFaDups</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
203 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/rowsToCols</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
204 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/sizeof</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
205 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/spacedToTab</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
206 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/splitFile</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
207 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/splitFileByColumn</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
208 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/sqlToXml</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
209 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/stringify</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
210 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/subChar</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
211 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/subColumn</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
212 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/tailLines</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
213 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/tdbQuery</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
214 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/textHistogram</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
215 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/tickToDate</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
216 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/toLower</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
217 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/toUpper</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
218 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/trfBig</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
219 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/twoBitDup</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
220 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/twoBitInfo</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
221 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/twoBitMask</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
222 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/twoBitToFa</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
223 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/validateFiles</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
224 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/validateManifest</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
225 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/wigCorrelate</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
226 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/wigEncode</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
227 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/wigToBigWig</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
228 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/wordLine</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
229 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/xmlCat</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
230 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/xmlToSql</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
231 <action type="move_directory_files">
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
232 <source_directory>.</source_directory>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
233 <destination_directory>$INSTALL_DIR/bin</destination_directory>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
234 </action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
235 </actions>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
236
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
237 <actions os="darwin" architecture="x86_64">
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
238 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/addCols</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
239 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/ameme</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
240 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/autoDtd</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
241 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/autoSql</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
242 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/autoXml</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
243 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/ave</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
244 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/aveCols</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
245 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/axtChain</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
246 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/axtSort</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
247 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/axtSwap</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
248 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/axtToMaf</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
249 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/axtToPsl</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
250 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedClip</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
251 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedCommonRegions</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
252 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedCoverage</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
253 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedExtendRanges</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
254 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedGeneParts</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
255 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedGraphToBigWig</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
256 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedIntersect</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
257 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedItemOverlapCount</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
258 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedPileUps</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
259 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedRemoveOverlap</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
260 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedRestrictToPositions</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
261 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedSort</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
262 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedToBigBed</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
263 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedToExons</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
264 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedToGenePred</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
265 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedToPsl</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
266 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bedWeedOverlapping</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
267 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigBedInfo</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
268 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigBedNamedItems</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
269 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigBedSummary</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
270 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigBedToBed</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
271 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigWigAverageOverBed</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
272 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigWigCorrelate</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
273 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigWigInfo</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
274 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigWigMerge</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
275 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigWigSummary</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
276 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigWigToBedGraph</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
277 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/bigWigToWig</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
278 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/blastToPsl</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
279 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/blastXmlToPsl</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
280 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/blat</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
281 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/calc</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
282 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/catDir</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
283 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/catUncomment</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
284 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainAntiRepeat</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
285 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainFilter</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
286 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainMergeSort</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
287 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainNet</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
288 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainPreNet</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
289 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainSort</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
290 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainSplit</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
291 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainStitchId</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
292 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainSwap</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
293 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainToAxt</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
294 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chainToPsl</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
295 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/checkAgpAndFa</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
296 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/checkCoverageGaps</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
297 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/checkHgFindSpec</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
298 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/checkTableCoords</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
299 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chopFaLines</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
300 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chromGraphFromBin</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
301 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/chromGraphToBin</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
302 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/colTransform</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
303 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/countChars</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
304 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/crTreeIndexBed</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
305 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/crTreeSearchBed</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
306 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/dbSnoop</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
307 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/dbTrash</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
308 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/estOrient</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
309 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faCmp</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
310 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faCount</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
311 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faFilter</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
312 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faFilterN</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
313 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faFrag</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
314 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faNoise</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
315 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faOneRecord</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
316 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faPolyASizes</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
317 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faRandomize</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
318 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faRc</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
319 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faSize</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
320 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faSomeRecords</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
321 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faSplit</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
322 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faToFastq</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
323 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faToTab</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
324 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faToTwoBit</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
325 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/faTrans</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
326 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/fastqToFa</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
327 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/featureBits</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
328 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/fetchChromSizes</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
329 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/findMotif</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
330 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/gapToLift</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
331 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/genePredCheck</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
332 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/genePredHisto</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
333 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/genePredSingleCover</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
334 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/genePredToBed</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
335 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/genePredToFakePsl</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
336 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/genePredToGtf</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
337 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/genePredToMafFrames</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
338 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/gfClient</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
339 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/gfServer</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
340 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/gff3ToGenePred</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
341 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/gff3ToPsl</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
342 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/gmtime</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
343 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/gtfToGenePred</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
344 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/headRest</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
345 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hgFindSpec</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
346 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hgGcPercent</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
347 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hgLoadBed</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
348 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hgLoadOut</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
349 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hgLoadWiggle</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
350 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hgTrackDb</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
351 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hgWiggle</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
352 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hgsql</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
353 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hgsqldump</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
354 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/htmlCheck</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
355 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/hubCheck</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
356 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/ixIxx</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
357 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/lavToAxt</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
358 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/lavToPsl</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
359 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/ldHgGene</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
360 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/liftOver</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
361 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/liftOverMerge</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
362 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/liftUp</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
363 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/linesToRa</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
364 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/localtime</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
365 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafAddIRows</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
366 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafAddQRows</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
367 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafCoverage</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
368 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafFetch</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
369 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafFilter</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
370 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafFrag</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
371 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafFrags</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
372 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafGene</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
373 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafMeFirst</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
374 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafOrder</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
375 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafRanges</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
376 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafSpeciesList</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
377 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafSpeciesSubset</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
378 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafSplit</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
379 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafSplitPos</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
380 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafToAxt</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
381 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafToPsl</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
382 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mafsInRegion</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
383 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/makeTableList</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
384 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/maskOutFa</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
385 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mktime</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
386 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/mrnaToGene</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
387 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/netChainSubset</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
388 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/netClass</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
389 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/netFilter</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
390 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/netSplit</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
391 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/netSyntenic</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
392 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/netToAxt</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
393 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/netToBed</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
394 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/newProg</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
395 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/nibFrag</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
396 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/nibSize</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
397 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/oligoMatch</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
398 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/overlapSelect</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
399 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/paraFetch</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
400 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/paraSync</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
401 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/positionalTblCheck</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
402 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslCDnaFilter</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
403 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslCat</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
404 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslCheck</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
405 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslDropOverlap</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
406 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslFilter</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
407 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslHisto</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
408 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslLiftSubrangeBlat</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
409 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslMap</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
410 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslMrnaCover</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
411 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslPairs</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
412 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslPartition</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
413 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslPretty</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
414 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslRecalcMatch</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
415 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslReps</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
416 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslSelect</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
417 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslSort</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
418 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslStats</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
419 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslSwap</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
420 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslToBed</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
421 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslToChain</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
422 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslToPslx</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
423 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/pslxToFa</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
424 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/qaToQac</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
425 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/qacAgpLift</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
426 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/qacToQa</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
427 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/qacToWig</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
428 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/raSqlQuery</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
429 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/raToLines</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
430 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/raToTab</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
431 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/randomLines</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
432 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/rmFaDups</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
433 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/rowsToCols</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
434 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/sizeof</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
435 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/spacedToTab</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
436 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/splitFile</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
437 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/splitFileByColumn</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
438 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/sqlToXml</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
439 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/stringify</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
440 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/subChar</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
441 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/subColumn</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
442 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/tailLines</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
443 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/tdbQuery</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
444 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/textHistogram</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
445 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/tickToDate</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
446 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/toLower</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
447 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/toUpper</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
448 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/trfBig</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
449 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/twoBitDup</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
450 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/twoBitInfo</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
451 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/twoBitMask</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
452 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/twoBitToFa</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
453 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/validateFiles</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
454 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/validateManifest</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
455 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/wigCorrelate</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
456 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/wigEncode</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
457 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/wigToBigWig</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
458 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/wordLine</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
459 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/xmlCat</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
460 <action type="download_file">ftp://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/xmlToSql</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
461 <action type="shell_command">chmod ugo+x *</action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
462 <action type="move_directory_files">
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
463 <source_directory>.</source_directory>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
464 <destination_directory>$INSTALL_DIR/bin</destination_directory>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
465 </action>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
466 </actions>
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
467
0
b05b788e3989 Uploaded
jjohnson
parents:
diff changeset
468 <actions>
b05b788e3989 Uploaded
jjohnson
parents:
diff changeset
469 <action type="download_by_url" target_filename="kent.zip">http://hgdownload.cse.ucsc.edu/admin/jksrc.zip</action>
b05b788e3989 Uploaded
jjohnson
parents:
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470 <action type="shell_command">
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471 export MACHTYPE=`uname -m`;
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472 export BINDIR=$INSTALL_DIR/bin; mkdir $INSTALL_DIR/bin;
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473 cd src/lib; make;
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474 cd ../jkOwnLib; make;
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475 cd ../blat; make;
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476 cd ../gfClient; make;
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477 cd ../gfServer; make;
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478 cd ../utils; mv makefile makefile.orig; grep -v -E 'pslLiftSubrangeBlat|raSqlQuery|scaffoldFaToAgp' makefile.orig > makefile; make
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479 </action>
1
822c8d19cfe3 Download binary executables if avaiablable, otherwise compile from src
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480 </actions>
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481 <action type="set_environment">
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482 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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483 </action>
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484 </actions_group>
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485 </install>
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486 <readme>
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487 Downloads and installs the latest kent tools from UCSC at: http://hgdownload.cse.ucsc.edu/admin/jksrc.zip
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488 ( The website doesn't offer previously released versions.)
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489
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490 NOTE: A license is required for use in a COMMERCIAL system.
0
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491
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492 Blat source and executables are freely available for academic, nonprofit and personal use.
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493 Commercial licensing information is available on the Kent Informatics website (http://www.kentinformatics.com/).
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494
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495 </readme>
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496 </package>
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497
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498 </tool_dependency>