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comparison tool_dependencies.xml @ 0:a472ccd208e2 draft default tip

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author jjohnson
date Tue, 22 Oct 2013 08:28:03 -0400
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1 <tool_dependency>
2 <package name="cap3" version="3">
3 <install version="1.0">
4 <actions_group>
5 <!-- Download the binaries for CAP3 compatible with 64-bit OSX. -->
6 <actions os="darwin" architecture="x86_64">
7 <action type="download_by_url">http://seq.cs.iastate.edu/CAP3/cap3.macosx.intel64.tar</action>
8 <action type="move_file">
9 <source>cap3</source>
10 <destination>$INSTALL_DIR</destination>
11 </action>
12 <action type="move_file">
13 <source>formcon</source>
14 <destination>$INSTALL_DIR</destination>
15 </action>
16 </actions>
17 <!-- Download the binaries for CAP3 compatible with 32-bit OSX. -->
18 <actions os="darwin" architecture="i386">
19 <action type="download_by_url">http://seq.cs.iastate.edu/CAP3/cap3.macosx.intel32.tar</action>
20 <action type="move_file">
21 <source>cap3</source>
22 <destination>$INSTALL_DIR</destination>
23 </action>
24 <action type="move_file">
25 <source>formcon</source>
26 <destination>$INSTALL_DIR</destination>
27 </action>
28 </actions>
29 <!-- Download the binaries for CAP3 compatible with 64-bit Linux. -->
30 <actions os="linux" architecture="x86_64">
31 <action type="download_by_url">http://seq.cs.iastate.edu/CAP3/cap3.linux.x86_64.tar</action>
32 <action type="move_file">
33 <source>cap3</source>
34 <destination>$INSTALL_DIR</destination>
35 </action>
36 <action type="move_file">
37 <source>formcon</source>
38 <destination>$INSTALL_DIR</destination>
39 </action>
40 </actions>
41 <!-- Download the binaries for CAP3 compatible with 32-bit Linux (i386). -->
42 <actions os="linux" architecture="i386">
43 <action type="download_by_url">http://seq.cs.iastate.edu/CAP3/cap3.linux.tar</action>
44 <action type="move_file">
45 <source>cap3</source>
46 <destination>$INSTALL_DIR</destination>
47 </action>
48 <action type="move_file">
49 <source>formcon</source>
50 <destination>$INSTALL_DIR</destination>
51 </action>
52 </actions>
53 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. -->
54 <actions>
55 <action type="shell_command">echo ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported.</action>
56 <action type="shell_command">echo Your machine details (the output from 'uname' and 'arch'):</action>
57 <action type="shell_command">uname</action>
58 <action type="shell_command">arch</action>
59 <action type="shell_command">echo Please report this via https://github.com/peterjc/galaxy_blast/issues - thank you!</action>
60 <action type="shell_command">false</action>
61 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
62 </actions>
63 <action type="set_environment">
64 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
65 </action>
66 </actions_group>
67 </install>
68 <readme>
69 CAP3: A DNA sequence assembly program.
70 Huang, X. and Madan, A. (1999) CAP3: A DNA sequence assembly program. Genome Res., 9, 868-877.
71 http://seq.cs.iastate.edu/
72
73 LICENCE:
74 CAP3 and PCAP are available for use at company under a licensing agreement from Michigan Tech. For information on a licensing agreement, please contact Robin Kolehmainen by email at rakolehm@mtu.edu or by phone at 906-487-2228. Michigan Tech handles licensing agreements on PCAP for Iowa State.
75
76 </readme>
77 </package>
78 </tool_dependency>