Mercurial > repos > jjohnson > package_bioc_seqlogo_1_24_0

annotate tool_dependencies.xml @ 0:2c9adf14664d draft default tip

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author jjohnson
date Tue, 14 Oct 2014 10:06:44 -0400
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="R" version="2.15.0">
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4 <repository changeset_revision="3a70cdc41d21" name="package_r_2_15_0" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="bioc_seqlogo" version="1.24.0">
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7 <install version="1.0">
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8 <actions>
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9 <action type="download_file">http://bioconductor.org/packages/2.11/bioc/src/contrib/seqLogo_1.24.0.tar.gz</action>
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10 <action type="set_environment_for_install">
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11 <repository changeset_revision="3a70cdc41d21" name="package_r_2_15_0" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu">
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12 <package name="R" version="2.15.0" />
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13 </repository>
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14 </action>
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15 <action type="shell_command">Rscript -e "install.packages(c('seqLogo_1.24.0.tar.gz'),lib='$INSTALL_DIR', repos=NULL, dependencies=FALSE)"</action>
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16 <action type="set_environment">
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17 <environment_variable action="prepend_to" name="R_LIBS_USER">$INSTALL_DIR</environment_variable>
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18 </action>
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19 </actions>
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20 </install>
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21 <readme>
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22 </readme>
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23 </package>
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24 </tool_dependency>