Mercurial > repos > jjohnson > mzsqlite_psm_align

comparison mzsqlite_psm_align.xml @ 6:100cff4db790 draft default tip

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planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/mzsqlite_psm_align commit ae4270ce6b1052d7eaac8e1e816263ad17f3db51-dirty
author jjohnson
date Tue, 10 Apr 2018 11:58:31 -0400
parents af5f22779a8e
children
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5:af5f22779a8e 6:100cff4db790
16 --twobit='$ref.ref_loc.fields.path' 16 --twobit='$ref.ref_loc.fields.path'
17 #elif $ref.ref_source == 'history': 17 #elif $ref.ref_source == 'history':
18 --twobit='$ref.ref_file' 18 --twobit='$ref.ref_file'
19 #end if 19 #end if
20 #if $gffutilsdb: 20 #if $gffutilsdb:
21 --gffutils_file '$gffutilsdb' 21 --gffutils_sqlite '$gffutilsdb'
22 #end if 22 #end if
23 #if $readlignments: 23 #if $readlignments:
24 --reads_bam 'input.bam' 24 --reads_bam 'input.bam'
25 #end if 25 #end if
26 #if 'probed' in str($output_formats).split(','): 26 #if 'probed' in str($output_formats).split(','):