Mercurial > repos > jjohnson > gmap

diff datatypes_conf.xml @ 2:f6ba0f12cca2 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Untested work-in-progress GMAP wrappers v3.0.0, from JJ back in June 2013
author peterjc
date Wed, 28 Sep 2016 10:43:44 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/datatypes_conf.xml	Wed Sep 28 10:43:44 2016 -0400
@@ -0,0 +1,24 @@
+<?xml version="1.0"?>
+<datatypes>
+    <datatype_files>
+        <datatype_file name="gmap.py"/>
+    </datatype_files>
+    <registration>
+        <datatype extension="gmapdb" type="galaxy.datatypes.gmap:GmapDB" display_in_upload="False"/>
+        <datatype extension="gmapsnpindex" type="galaxy.datatypes.gmap:GmapSnpIndex" display_in_upload="False"/>
+        <datatype extension="iit" type="galaxy.datatypes.gmap:IntervalIndexTree" display_in_upload="True"/>
+        <datatype extension="splicesites.iit" type="galaxy.datatypes.gmap:SpliceSitesIntervalIndexTree" display_in_upload="True"/>
+        <datatype extension="introns.iit" type="galaxy.datatypes.gmap:IntronsIntervalIndexTree" display_in_upload="True"/>
+        <datatype extension="snps.iit" type="galaxy.datatypes.gmap:SNPsIntervalIndexTree" display_in_upload="True"/>
+        <datatype extension="gmap_annotation" type="galaxy.datatypes.gmap:IntervalAnnotation" display_in_upload="False"/>
+        <datatype extension="gmap_splicesites" type="galaxy.datatypes.gmap:SpliceSiteAnnotation" display_in_upload="True"/>
+        <datatype extension="gmap_introns" type="galaxy.datatypes.gmap:IntronAnnotation" display_in_upload="True"/>
+        <datatype extension="gmap_snps" type="galaxy.datatypes.gmap:SNPAnnotation" display_in_upload="True"/>
+    </registration>
+    <sniffers>
+        <sniffer type="galaxy.datatypes.gmap:IntervalAnnotation"/>
+        <sniffer type="galaxy.datatypes.gmap:SpliceSiteAnnotation"/>
+        <sniffer type="galaxy.datatypes.gmap:IntronAnnotation"/>
+        <sniffer type="galaxy.datatypes.gmap:SNPAnnotation"/>
+    </sniffers>
+</datatypes>