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comparison create_gffdb.xml @ 2:b956465b8893 draft default tip

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planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/gffutils commit f84d4d6e7fa7617e4b8298007db22e1355071213-dirty
author jjohnson
date Tue, 17 Apr 2018 10:19:30 -0400
parents 8880c2e4b2ee
children
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1:8880c2e4b2ee 2:b956465b8893
2 <description>for GTF or GFF3</description> 2 <description>for GTF or GFF3</description>
3 <requirements> 3 <requirements>
4 <requirement type="package">gffutils</requirement> 4 <requirement type="package">gffutils</requirement>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 python '$__tool_directory__/create_gffdb.py' $create_introns '$input' '$output' 7 python '$__tool_directory__/create_gffdb.py' $disable_infer_transcripts $disable_infer_genes $create_introns '$input' '$output'
8 ]]></command> 8 ]]></command>
9 <inputs> 9 <inputs>
10 <param name="input" type="data" format="gtf,gff3" label="GTF or GFF3 Annotation"/> 10 <param name="input" type="data" format="gtf,gff3" label="GTF or GFF3 Annotation"/>
11 <param name="create_introns" type="boolean" truevalue="--create_introns" falsevalue="" checked="false" 11 <param name="create_introns" type="boolean" truevalue="--create_introns" falsevalue="" checked="false"
12 label="create intron features"/> 12 label="create intron features"/>