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Validate and sanitize separator parameters for annotation fields
author Jim Johnson <jj@umn.edu>
date Thu, 23 Jan 2014 16:30:21 -0600
parents 30975b3ff0dc
children
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2:30975b3ff0dc 3:fe044d480b3a
54 </param> 54 </param>
55 <when value="no"/> 55 <when value="no"/>
56 <when value="yes"> 56 <when value="yes">
57 <param name="annotation_columns" type="data_column" data_ref="reference" multiple="true" label="columns from reference to append to found input lines" 57 <param name="annotation_columns" type="data_column" data_ref="reference" multiple="true" label="columns from reference to append to found input lines"
58 help=""/> 58 help=""/>
59 <param name="annotation_separator" type="text" value="" optional="true" label="separator to place between annotations from different reference lines" 59 <param name="annotation_separator" type="text" value=";" optional="true" label="separator to place between annotations from different reference lines"
60 help="defaults to ;"/> 60 help="defaults to ;">
61 <param name="annotation_col_sep" type="text" value="" optional="true" label="separator to place between annotation columns from the same reference line" 61 <validator type="regex" message="Single quote character is not allowed">^[^']*$</validator>
62 help="defaults to ,"/> 62 <sanitizer>
63 <valid initial="string.printable">
64 <remove value="&apos;"/>
65 </valid>
66 <mapping initial="none">
67 <add source="&apos;" target=""/>
68 </mapping>
69 </sanitizer>
70 </param>
71 <param name="annotation_col_sep" type="text" value="," optional="true" label="separator to place between annotation columns from the same reference line"
72 help="defaults to ,">
73 <validator type="regex" message="Single quote character is not allowed">^[^']*$</validator>
74 <sanitizer>
75 <valid initial="string.printable">
76 <remove value="&apos;"/>
77 </valid>
78 <mapping initial="none">
79 <add source="&apos;" target=""/>
80 </mapping>
81 </sanitizer>
82 </param>
63 </when> 83 </when>
64 </conditional> 84 </conditional>
65 </inputs> 85 </inputs>
66 <stdio> 86 <stdio>
67 <exit_code range="1:" level="fatal" description="Error" /> 87 <exit_code range="1:" level="fatal" description="Error" />