Mercurial > repos > jjohnson > eggnog_mapper

diff eggnog_mapper.xml @ 5:a093b9061498 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/eggnog_mapper commit 525985820e3426e13869da264197fd3e8ce8bc01
author jjohnson
date Thu, 07 Nov 2019 12:05:49 -0500
parents a74d61dbd155
children
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--- a/eggnog_mapper.xml	Wed Nov 06 14:06:45 2019 -0500
+++ b/eggnog_mapper.xml	Thu Nov 07 12:05:49 2019 -0500
@@ -1,12 +1,10 @@
 <tool id="eggnog_mapper" name="eggNOG Mapper" version="@VERSION@.1">
     <description>functional sequence annotation by orthology</description>
     <macros>
-        <token name="@VERSION@">1.0.3</token>
+        <import>eggnog_macros.xml</import>
     </macros>
-    <requirements>
-        <requirement type="package" version="@VERSION@">eggnog-mapper</requirement>
-    </requirements>
-    <version_command>emapper.py --version</version_command>
+    <expand macro="requirements"/>
+    <expand macro="version_command"/>
     <command detect_errors="aggressive"><![CDATA[
         emapper.py
         --data_dir '$eggnog_data.fields.path'
@@ -475,7 +473,5 @@
 - ``eggNOG_HMM_model_annotation``: eggNOG functional description inferred from best matching OG
 
     ]]></help>
-    <citations>
-        <citation type="doi">10.1093/nar/gkv1248</citation>
-    </citations>
+    <expand macro="citations"/>
 </tool>