Mercurial > repos > jjohnson > eggnog_mapper

comparison data_manager/data_manager_eggnog.py @ 4:ea9772670fb5 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit ab8f3af4dd052475db01f8120df0f9da6e8fff29
author jjohnson
date Wed, 06 Nov 2019 14:06:45 -0500
parents 9d94fe7ce8b9
children
comparison
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3:9d94fe7ce8b9 4:ea9772670fb5
42 dm_dict['data_tables'] = dm_dict.get('data_tables', {}) 42 dm_dict['data_tables'] = dm_dict.get('data_tables', {})
43 data_table = 'eggnog_mapper_db' 43 data_table = 'eggnog_mapper_db'
44 dm_dict['data_tables'][data_table]\ 44 dm_dict['data_tables'][data_table]\
45 = dm_dict['data_tables'].get(data_table, []) 45 = dm_dict['data_tables'].get(data_table, [])
46 data_table_entry = dict(value=db_version, name=db_version, 46 data_table_entry = dict(value=db_version, name=db_version,
47 path=eggnog_db_path) 47 path=args.install_path)
48 dm_dict['data_tables'][data_table].append(data_table_entry) 48 dm_dict['data_tables'][data_table].append(data_table_entry)
49 data_table = 'eggnog_mapper_hmm_dbs' 49 data_table = 'eggnog_mapper_hmm_dbs'
50 dm_dict['data_tables'][data_table]\ 50 dm_dict['data_tables'][data_table]\
51 = dm_dict['data_tables'].get(data_table, []) 51 = dm_dict['data_tables'].get(data_table, [])
52 if args.dbs: 52 if args.dbs: