Mercurial > repos > jjohnson > eggnog_mapper

comparison test-data/make_comp_file.sh @ 2:a74d61dbd155 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper commit f431329cd1c7f8a6014207a4ebfd9ffaa67e5497-dirty
author jjohnson
date Mon, 04 Nov 2019 16:38:44 -0500
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1:7de7487a7e8d 2:a74d61dbd155
1 #!/bin/bash
2
3 base_path=$1
4
5 emapper.py \
6 -i $base_path/test-data/nlim_fragment.fasta \
7 --output HMM_nlim \
8 --output_dir $base_path/test-data \
9 --override \
10 --database $base_path/test-data/cached_locally/hmmdb_levels/ENOG411CB2I/ENOG411CB2I \
11 --data_dir $base_path/test-data/cached_locally \
12 --no_refine\
13 --no_annot \
14 --no_file_comments
15
16 emapper.py \
17 -i $base_path/test-data/nlim_fragment.fasta \
18 --output DIA_nlim \
19 --output_dir $base_path/test-data \
20 --override \
21 -m diamond \
22 --data_dir $base_path/test-data/cached_locally \
23 --no_file_comments \
24 --no_annot