Mercurial > repos > jjohnson > defuse8
comparison data_manager_conf.xml @ 0:63f23d5db27c draft
planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/defuse commit 2c2fd38cb761ec57bac7a0bd376e6aa2b88265d0-dirty
| author | jjohnson |
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| date | Mon, 20 May 2019 15:25:03 -0400 |
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| -1:000000000000 | 0:63f23d5db27c |
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| 1 <?xml version="1.0"?> | |
| 2 <data_managers> | |
| 3 <data_manager tool_file="datamanager_create_reference.xml" id="data_manager_defuse_reference" > | |
| 4 <data_table name="defuse_reference"> <!-- Defines a Data Table to be modified. --> | |
| 5 <output> <!-- Handle the output of the Data Manager Tool --> | |
| 6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> | |
| 7 <column name="dbkey" /> | |
| 8 <column name="name" /> | |
| 9 <column name="path" output_ref="out_file" > <!-- The value of this column will be modified based upon data in "out_file". example value "phiX.fa" --> | |
| 10 <move type="directory"> <!-- Moving a file from the extra files path of "out_file" --> | |
| 11 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base --> | |
| 12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${value}/defuse</target> <!-- Target Location to store the file, directories are created as needed --> | |
| 13 </move> | |
| 14 <!-- datamanager_create_reference.py should have copied the defuse config file to the working directory. | |
| 15 so if we put the ${dbkey}.config path in this column, defuse.xml can set the data_directory to this this directory. | |
| 16 --> | |
| 17 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${value}/defuse/${value}.config</value_translation> <!-- Store this value in the final Data Table --> | |
| 18 <value_translation type="function">abspath</value_translation> | |
| 19 </column> | |
| 20 </output> | |
| 21 </data_table> | |
| 22 </data_manager> | |
| 23 </data_managers> | |
| 24 | |
| 25 |