| Tue, 03 Sep 2013 06:41:19 -0500 |
Jim Johnson |
Add breakpoints.bam output derived from breakpoints.genome.psl
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| Wed, 14 Aug 2013 16:44:18 -0500 |
Jim Johnson |
Add more info fields to defuse_results_to_vcf.py
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| Fri, 09 Aug 2013 11:19:26 -0500 |
Jim Johnson |
Define defuse.results.tsv ext as subclass of tabular, add defuse_results_to_vcf to generate vcf form DeFuse results
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| Wed, 07 Aug 2013 11:54:05 -0500 |
Jim Johnson |
defuse.xml fix unigene_fasta path to use ncbi_prefix
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| Thu, 27 Jun 2013 13:11:50 -0500 |
Jim Johnson |
Update datamanager and defuse.xml config file generation
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| Fri, 21 Jun 2013 14:46:11 -0500 |
Jim Johnson |
Add datamanager, move to defuse_reference.loc
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| Sat, 15 Jun 2013 14:36:47 -0500 |
Jim Johnson |
Update create_reference_dataset for non human genome builds
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| Sun, 09 Jun 2013 20:30:21 -0500 |
Jim Johnson |
Add create_reference_dataset.xml
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| Thu, 06 Jun 2013 07:36:16 -0500 |
Jim Johnson |
Change dependency for kent (blat faToTwoBit) to latest since versions not available at UCSC
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| Wed, 05 Jun 2013 15:37:57 -0500 |
Jim Johnson |
Update to DeFuse verion 0.6.1 and change tool dependencies for autoinstall
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| Fri, 18 Jan 2013 14:56:40 -0600 |
Jim Johnson |
Add gmap_setup_bin and gmap_index_directory to defuse.xml config file generation
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| Mon, 07 Jan 2013 12:44:55 -0600 |
Jim Johnson |
Defuse version 0.6.0
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| Mon, 07 Jan 2013 12:20:39 -0600 |
Jim Johnson |
Edit labels and help.
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| Fri, 04 Jan 2013 14:59:03 -0600 |
Jim Johnson |
Add dependecies for bowtie, blat, and faToTwoBit
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| Fri, 04 Jan 2013 13:24:17 -0600 |
Jim Johnson |
Make get_reads option the default
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| Fri, 04 Jan 2013 13:11:04 -0600 |
Jim Johnson |
Fix faToTwoBit name
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| Fri, 04 Jan 2013 13:07:16 -0600 |
Jim Johnson |
Fix sed options
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| Fri, 04 Jan 2013 11:53:33 -0500 |
jjohnson |
Uploaded
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