Mercurial > repos > jjohnson > defuse
diff defuse.xml @ 25:2ecf82136986
Define defuse.results.tsv ext as subclass of tabular, add defuse_results_to_vcf to generate vcf form DeFuse results
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Fri, 09 Aug 2013 11:19:26 -0500 |
| parents | e8fc5de0578b |
| children | d57fcac025e2 |
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--- a/defuse.xml Wed Aug 07 12:00:42 2013 -0500 +++ b/defuse.xml Fri Aug 09 11:19:26 2013 -0500 @@ -86,8 +86,8 @@ <data format="html" name="defuse_out" label="${tool.name} on ${on_string}: defuse_output (purge when no longer needed)"> <filter>keep_output == True</filter> </data> - <data format="tabular" name="results_classify_tsv" label="${tool.name} on ${on_string}: results.classify.tsv" /> - <data format="tabular" name="results_filtered_tsv" label="${tool.name} on ${on_string}: results.filtered.tsv" /> + <data format="defuse.results.tsv" name="results_classify_tsv" label="${tool.name} on ${on_string}: results.classify.tsv" /> + <data format="defuse.results.tsv" name="results_filtered_tsv" label="${tool.name} on ${on_string}: results.filtered.tsv" /> <data format="html" name="fusion_reads" label="${tool.name} on ${on_string}: fusion_reads"> <filter>do_get_reads == True</filter> </data>