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diff defuse.xml @ 8:06675bd664ee

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Update to DeFuse verion 0.6.1 and change tool dependencies for autoinstall
author Jim Johnson <jj@umn.edu>
date Wed, 05 Jun 2013 15:37:57 -0500
parents f4eadbd2e7c1
children 08e9244aeab8
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--- a/defuse.xml	Fri Jan 18 14:56:40 2013 -0600
+++ b/defuse.xml	Wed Jun 05 15:37:57 2013 -0500
@@ -1,12 +1,11 @@
-<tool id="defuse" name="DeFuse" version="1.6">
+<tool id="defuse" name="DeFuse" version="1.6.1">
  <description>identify fusion transcripts</description>
  <requirements>
-  <requirement type="package" version="0.6.0">defuse</requirement>
+  <requirement type="package" version="0.6.1">defuse</requirement>
   <requirement type="package" version="0.1.18">samtools</requirement>
-  <requirement type="package" version="0.12.7">bowtie</requirement>
-  <requirement type="package" version="2012-07-20">gmap</requirement>
-  <requirement type="package" version="34x10">blat</requirement>
-  <requirement type="package" version="34x10">fatotwobit</requirement>
+  <requirement type="package" version="1.0.0">bowtie</requirement>
+  <requirement type="package" version="2013-05-09">gmap</requirement>
+  <requirement type="package" version="283">kent</requirement>
  </requirements>
   <command interpreter="command"> /bin/bash $shscript </command>
  <inputs>