Mercurial > repos > jjohnson > data_manager_snpeff

comparison data_manager/data_manager_snpEff_download.xml @ 6:a329eda0cdff draft default tip

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author jjohnson
date Wed, 09 Dec 2015 13:49:55 -0500
parents 78bcf4ac437c
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5:78bcf4ac437c 6:a329eda0cdff
1 <tool id="data_manager_snpeff_download" name="SnpEff Download" version="4.0" tool_type="manage_data"> 1 <tool id="data_manager_snpeff_download" name="SnpEff Download" version="4.1.0" tool_type="manage_data">
2 <description>Download a new database</description> 2 <description>Download a new database</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="4.0">snpEff</requirement> 4 <requirement type="package" version="4.1">snpEff</requirement>
5 </requirements> 5 </requirements>
6 <command interpreter="python"> 6 <command interpreter="python">
7 data_manager_snpEff_download.py --jar_path \$SNPEFF_JAR_PATH/snpEff.jar --config \$SNPEFF_JAR_PATH/snpEff.config 7 data_manager_snpEff_download.py --jar_path \$SNPEFF_JAR_PATH/snpEff.jar --config \$SNPEFF_JAR_PATH/snpEff.config
8 --genome_version "$genome_version" "$out_file" 8 --genome_version "$genome_version" "$out_file"
9 </command> 9 </command>