Mercurial > repos > jjohnson > data_manager_eggnog_mapper_abspath
comparison data_manager/data_manager_eggnog.xml @ 0:d4e2e8176db8 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/data_manager_eggnog_mapper_abspath commit 4ac0d4d79233ac5151ab32741183adbfecb70a45
| author | jjohnson |
|---|---|
| date | Thu, 07 Nov 2019 12:42:32 -0500 |
| parents | |
| children | 1e4312aca6b5 |
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| -1:000000000000 | 0:d4e2e8176db8 |
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| 1 <tool id="data_manager_eggnog_abspath" name="EggNOG DB Download" version="@VERSION@.0" tool_type="manage_data"> | |
| 2 <description>eggnog data to a specified directory</description> | |
| 3 <macros> | |
| 4 <import>eggnog_macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements"/> | |
| 7 <expand macro="version_command"/> | |
| 8 <command detect_errors="exit_code"><![CDATA[ | |
| 9 #set $install_path = $target_path | |
| 10 @DOWNLOAD_CMD@ | |
| 11 ]]></command> | |
| 12 <inputs> | |
| 13 <param name="target_path" type="text" value="" label="Download Destination" | |
| 14 help="Full path to where the eggnod data should be installed."> | |
| 15 <validator type="regex" message="Must be an absolute path">^/.*$</validator> | |
| 16 </param> | |
| 17 <expand macro="data_manager_params"/> | |
| 18 </inputs> | |
| 19 <expand macro="data_manager_outputs"/> | |
| 20 <tests> | |
| 21 <expand macro="data_manager_test"/> | |
| 22 </tests> | |
| 23 <help><![CDATA[ | |
| 24 This tool downloads eggnog data using download_eggnog_data.py | |
| 25 and populates the data tables: eggnog_mapper_db and eggnog_mapper_hmm_dbs. | |
| 26 The data is located at: http://eggnogdb.embl.de/download/emapperdb-4.5.1/ | |
| 27 The optional eggNOG HMM databases: http://eggnogdb.embl.de/download/emapperdb-4.5.1/hmmdb_levels/ | |
| 28 can vary from 1G to 80G in size. | |
| 29 | |
| 30 The data will be downloaded to the specified directory. This allows adding hmmdb_levels to an existing download. | |
| 31 You should not mix eggnog data versions in the same directory. | |
| 32 ]]></help> | |
| 33 <expand macro="citations"/> | |
| 34 </tool> |