Mercurial > repos > jjohnson > data_manager_eggnog_mapper

comparison data_manager_conf.xml @ 0:6abbdf623176 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/eggnog_mapper/eggnog_mapper_data_manager commit c4fb2c42cd1f2ce8748a2d949238eea70635f11b-dirty
author jjohnson
date Fri, 08 Nov 2019 13:08:30 -0500
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:6abbdf623176
1 <?xml version="1.0"?>
2 <data_managers>
3 <data_manager tool_file="data_manager/data_manager_eggnog.xml" id="data_manager_eggnog" >
4 <data_table name="eggnog_mapper_db"> <!-- Defines a Data Table to be modified. -->
5 <output> <!-- Handle the output of the Data Manager Tool -->
6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
7 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
8 <column name="path" output_ref="out_file" >
9 <move type="directory" relativize_symlinks="True">
10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">eggnog_data/${value}</target>
11 </move>
12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/eggnog_data/${value}</value_translation>
13 <value_translation type="function">abspath</value_translation>
14 </column>
15 </output>
16 </data_table>
17 <data_table name="eggnog_mapper_hmm_dbs"> <!-- Defines a Data Table to be modified. -->
18 <output> <!-- Handle the output of the Data Manager Tool -->
19 <column name="key" /> <!-- columns that are going to be specified by the Data Manager Tool -->
20 <column name="db_version" /> <!-- columns that are going to be specified by the Data Manager Tool -->
21 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
22 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
23 <column name="path" /> <!-- columns that are going to be specified by the Data Manager Tool -->
24 </output>
25 </data_table>
26 </data_manager>
27 </data_managers>