Mercurial > repos > jjohnson > cummerbund

comparison cummerbund_wrapper.py @ 1:6a9bc26ab8d9

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Added cuffdata and cuffdatadb datatypes, cuffdiff multiselect outputs
author Jim Johnson <jj@umn.edu>
date Mon, 08 Oct 2012 15:26:47 -0500
parents 8ba5f0460b1e
children b0d11fcbc3ac
comparison
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0:8ba5f0460b1e 1:6a9bc26ab8d9
11 sys.exit() 11 sys.exit()
12 12
13 def html_report_from_directory( html_out, dir ): 13 def html_report_from_directory( html_out, dir ):
14 html_out.write( '<html>\n<head>\n<title>Galaxy - cummeRbund Output</title>\n</head>\n<body>\n<p/>\n<ul>\n' ) 14 html_out.write( '<html>\n<head>\n<title>Galaxy - cummeRbund Output</title>\n</head>\n<body>\n<p/>\n<ul>\n' )
15 for fname in sorted( os.listdir( dir ) ): 15 for fname in sorted( os.listdir( dir ) ):
16 html_out.write( '<li><a href="%s">%s</a></li>\n' % ( fname, fname ) ) 16 # html_out.write( '<li><a href="%s">%s</a></li>\n' % ( fname, fname ) )
17 html_out.write( '<li><a href="%s"><img src="%s" alt="" height="42" width="42">%s</a></li>\n' % ( fname, fname , fname ) )
17 html_out.write( '</ul>\n</body>\n</html>\n' ) 18 html_out.write( '</ul>\n</body>\n</html>\n' )
18 19
19 def __main__(): 20 def __main__():
20 #Parse Command Line 21 #Parse Command Line
21 parser = optparse.OptionParser() 22 parser = optparse.OptionParser()