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comparison cuffdiff_wrapper.xml @ 11:56bdf6d4ac9c

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cuffdiff_wrapper.xml - allow either gtf of gff3 format for annotation input.
author Jim Johnson <jj@umn.edu>
date Fri, 19 Oct 2012 13:41:16 -0500
parents 79c687de829b
children 4597c429b6fb
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10:45275147ac1e 11:56bdf6d4ac9c
112 #end for 112 #end for
113 #end if 113 #end if
114 114
115 </command> 115 </command>
116 <inputs> 116 <inputs>
117 <param format="gtf" name="gtf_input" type="data" label="Transcripts" help="A transcript GTF file produced by cufflinks, cuffcompare, or other source."/> 117 <param format="gtf,gff3" name="gtf_input" type="data" label="Transcripts" help="A transcript GTF file produced by cufflinks, cuffcompare, or other source."/>
118 <conditional name="group_analysis"> 118 <conditional name="group_analysis">
119 <param name="do_groups" type="select" label="Perform replicate analysis" help="Perform cuffdiff with replicates in each group."> 119 <param name="do_groups" type="select" label="Perform replicate analysis" help="Perform cuffdiff with replicates in each group.">
120 <option value="No">No</option> 120 <option value="No">No</option>
121 <option value="Yes">Yes</option> 121 <option value="Yes">Yes</option>
122 </param> 122 </param>