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annotate tool_dependencies.xml @ 11:75fde37f69e5

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Add cd-hit to protein fastas
author Jim Johnson <jj@umn.edu>
date Thu, 27 Jun 2013 21:27:06 -0500
parents 211ca88ce047
children
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="cd-hit" version="4.6.1">
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4 <install version="1.0">
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5 <actions>
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6 <action type="download_by_url">http://cdhit.googlecode.com/files/cd-hit-v4.6.1-2012-08-27.tgz</action>
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7 <action type="shell_command">mkdir -p $INSTALL_DIR/bin/</action>
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8 <action type="shell_command">pwd</action>
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9 <action type="shell_command">make openmp=yes</action>
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10 <action type="shell_command">ls</action>
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11 <action type="shell_command">make PREFIX=$INSTALL_DIR/bin/ install</action>
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12 <action type="set_environment">
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13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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14 </action>
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15 </actions>
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16 </install>
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17 <readme>
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18 These links provide information for building the cdhit package:
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20 http://weizhong-lab.ucsd.edu/cd-hit/
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22 https://code.google.com/p/cdhit/
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24 https://code.google.com/p/cdhit/source/browse/README
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26 </readme>
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27 </package>
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28 </tool_dependency>
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