Mercurial > repos > jjohnson > bcftools_reheader

comparison bcftools_reheader.xml @ 1:c547813e234e draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
author jjohnson
date Sun, 26 Jun 2016 15:43:35 -0400
parents 4a6d130d8eb8
children
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0:4a6d130d8eb8 1:c547813e234e
108 </output> 108 </output>
109 </test> 109 </test>
110 <test> 110 <test>
111 <param name="input_file" ftype="vcf" value="reheader.vcf" /> 111 <param name="input_file" ftype="vcf" value="reheader.vcf" />
112 <param name="samples_src" value="entry" /> 112 <param name="samples_src" value="entry" />
113 <param name="sample_lines" value="AAA\nBBB\n" /> 113 <param name="sample_lines" value="AAA\\nBBB\\n" />
114 <param name="output_type" value="v" /> 114 <param name="output_type" value="v" />
115 <output name="output_file"> 115 <output name="output_file">
116 <assert_contents> 116 <assert_contents>
117 <not_has_text text="XY00001" /> 117 <not_has_text text="XY00001" />
118 <has_text_matching expression="FORMAT\tAAA\tBBB"/> 118 <has_text_matching expression="FORMAT\tAAA\tBBB"/>
120 </output> 120 </output>
121 </test> 121 </test>
122 <test> 122 <test>
123 <param name="input_file" ftype="vcf" value="reheader.vcf" /> 123 <param name="input_file" ftype="vcf" value="reheader.vcf" />
124 <param name="samples_src" value="entry" /> 124 <param name="samples_src" value="entry" />
125 <param name="sample_lines" value="XY00002 BBB\nXY00001 AAA" /> 125 <param name="sample_lines" value="XY00002 BBB\\nXY00001 AAA" />
126 <param name="output_type" value="v" /> 126 <param name="output_type" value="v" />
127 <output name="output_file"> 127 <output name="output_file">
128 <assert_contents> 128 <assert_contents>
129 <not_has_text text="XY00001" /> 129 <not_has_text text="XY00001" />
130 <has_text_matching expression="FORMAT\tAAA\tBBB"/> 130 <has_text_matching expression="FORMAT\tAAA\tBBB"/>