Mercurial > repos > jjohnson > bcftools_plugin_missing2ref

comparison test-data/consensus.vcf @ 0:ff65d6e0809b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
author jjohnson
date Sat, 25 Jun 2016 20:51:04 -0400
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-1:000000000000 0:ff65d6e0809b
1 ##fileformat=VCFv4.2
2 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
3 ##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record">
4 ##ALT=<ID=DEL,Description="Deletion">
5 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA001
6 1 5 . C a . PASS . GT 0/1
7 1 5 . C t . PASS . GT 0/1
8 1 7 . T a . PASS . GT .
9 1 10 . G a . PASS . GT 0/1
10 1 12 . GACA ga . PASS . GT 0/1
11 1 16 . T taaa . PASS . GT 1/1
12 1 19 . A c . PASS . GT 0/1
13 1 61 . C a . PASS . GT 0/1
14 2 61 . AGAG aa . PASS . GT 0/1
15 2 119 . AAA t . PASS . GT 0/1
16 2 179 . G gacgtacgt . PASS . GT 0/1
17 2 200 . A <DEL> . PASS END=210 GT 1/0
18 2 481 . T c,a . PASS . GT 0/2