Mercurial > repos > jjohnson > bcftools_plugin_mendelian

comparison bcftools_plugin_mendelian.xml @ 1:3fc65f0b812d draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
author jjohnson
date Sun, 26 Jun 2016 15:40:30 -0400
parents 7b5c5cab79e1
children
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equal deleted inserted replaced
0:7b5c5cab79e1 1:3fc65f0b812d
96 <tests> 96 <tests>
97 <test> 97 <test>
98 <!-- This is just a test on a random file, should have a real test case --> 98 <!-- This is just a test on a random file, should have a real test case -->
99 <param name="input_file" ftype="vcf" value="convert.vcf" /> 99 <param name="input_file" ftype="vcf" value="convert.vcf" />
100 <param name="trios_src" value="trio" /> 100 <param name="trios_src" value="trio" />
101 <param name="trio" value="NA00001,NA00002,NA00006" /> 101 <param name="mother" value="NA00001" />
102 <param name="father" value="NA00002" />
103 <param name="child" value="NA00006" />
102 <param name="mode" value="delete" /> 104 <param name="mode" value="delete" />
103 <param name="output_type" value="v" /> 105 <param name="output_type" value="v" />
104 <output name="output_file"> 106 <output name="output_file">
105 <assert_contents> 107 <assert_contents>
106 <has_text text="2698758" /> 108 <has_text text="2698758" />
110 </test> 112 </test>
111 <test> 113 <test>
112 <!-- This is just a test on a random file, should have a real test case --> 114 <!-- This is just a test on a random file, should have a real test case -->
113 <param name="input_file" ftype="vcf" value="convert.vcf" /> 115 <param name="input_file" ftype="vcf" value="convert.vcf" />
114 <param name="trios_src" value="trio" /> 116 <param name="trios_src" value="trio" />
115 <param name="trio" value="NA00001,NA00002,NA00006" /> 117 <param name="mother" value="NA00001" />
118 <param name="father" value="NA00002" />
119 <param name="child" value="NA00006" />
116 <param name="mode" value="x" /> 120 <param name="mode" value="x" />
117 <param name="output_type" value="v" /> 121 <param name="output_type" value="v" />
118 <output name="output_file"> 122 <output name="output_file">
119 <assert_contents> 123 <assert_contents>
120 <not_has_text text="2698758" /> 124 <not_has_text text="2698758" />