Mercurial > repos > jjohnson > bcftools_plugin_fixploidy

comparison bcftools_plugin_fixploidy.xml @ 1:e109bcf84b30 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
author jjohnson
date Sun, 26 Jun 2016 15:39:08 -0400
parents f0520447da4d
children
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0:f0520447da4d 1:e109bcf84b30
25 25
26 @OUTPUT_TYPE@ 26 @OUTPUT_TYPE@
27 @THREADS@ 27 @THREADS@
28 28
29 ## Primary Input/Outputs 29 ## Primary Input/Outputs
30 @INPUT_FILES@ 30 @INPUT_FILE@
31 31
32 ## Plugin section 32 ## Plugin section
33 #set $section = $sec_plugin 33 #set $section = $sec_plugin
34 -- 34 --
35 @PLOIDY_FILE@ 35 @PLOIDY_FILE@
36 #if $section.sex: 36 #if $section.sex:
37 --sex "${section.sex}" 37 --sex "${section.sex}"
38 #end if 38 #end if
39 ## Only default tag GT is currently accepted 39 ## Only default tag GT is currently accepted
40 --tags = "$section.tags" 40 --tags "$section.tags"
41 > "$output_file" 41 > "$output_file"
42 ]]> 42 ]]>
43 </command> 43 </command>
44 <inputs> 44 <inputs>
45 <expand macro="macro_input" /> 45 <expand macro="macro_input" />