Mercurial > repos > jjohnson > bcftools_plugin_dosage

comparison bcftools_plugin_dosage.xml @ 1:e3aa7eba224b draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
author jjohnson
date Sun, 26 Jun 2016 15:37:46 -0400
parents 416eb99f7ba4
children
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0:416eb99f7ba4 1:e3aa7eba224b
26 ## Primary Input/Outputs 26 ## Primary Input/Outputs
27 @INPUT_FILE@ 27 @INPUT_FILE@
28 28
29 ## Plugin section 29 ## Plugin section
30 #set $section = $sec_plugin 30 #set $section = $sec_plugin
31 #if $section.tag: 31 #if $section.tags:
32 -- --tags "${section.tags}" 32 -- --tags "${section.tags}"
33 #end if 33 #end if
34 > "$output_file" 34 > "$output_file"
35 35
36 ]]> 36 ]]>
43 <expand macro="macro_include" /> 43 <expand macro="macro_include" />
44 <expand macro="macro_exclude" /> 44 <expand macro="macro_exclude" />
45 </section> 45 </section>
46 <section name="sec_plugin" expanded="true" title="Plugin Options"> 46 <section name="sec_plugin" expanded="true" title="Plugin Options">
47 <param name="tags" type="text" value="" optional="true" label="VCF tag to determine the dosage from [PL,GL,GT]"> 47 <param name="tags" type="text" value="" optional="true" label="VCF tag to determine the dosage from [PL,GL,GT]">
48 <validator type="regex" message="Tags separated by commas">^(PL|GL|GT)(,(PL|GL|GT))*)</validator> 48 <validator type="regex" message="Tags separated by commas">^(PL|GL|GT)(,(PL|GL|GT))*$</validator>
49 </param> 49 </param>
50 </section> 50 </section>
51 </inputs> 51 </inputs>
52 <outputs> 52 <outputs>
53 <data name="output_file" format="tabular"/> 53 <data name="output_file" format="tabular"/>