# HG changeset patch
# User jjohnson
# Date 1466970477 14400
# Node ID e7657a41b32a94940ef9e0d55819b04209fe007d
# Parent  1c55de3bf2172f533464cca384014acfe822ae57
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty

diff -r 1c55de3bf217 -r e7657a41b32a bcftools_consensus.xml
--- a/bcftools_consensus.xml	Sat Jun 25 20:47:06 2016 -0400
+++ b/bcftools_consensus.xml	Sun Jun 26 15:47:57 2016 -0400
@@ -67,8 +67,16 @@
             <param name="input_file" ftype="vcf" value="consensus.vcf" />
             <param name="mask" ftype="tabular" value="consensus.tab" />
             <param name="chain" value="True" />
-            <output name="output_file" file="consensus.1.out" lines_diff="6"/>
-            <output name="output_file" file="consensus.1.chain" />
+            <output name="output_file">
+                <assert_contents>
+                    <has_text text="NNNNNNNNNNNNNNNNNNNNNNNNNN" />
+                </assert_contents>
+            </output>
+            <output name="chain_file">
+                <assert_contents>
+                    <has_text text="chain 497 1 501 + 1 501 1 502 + 1 502 1" />
+                </assert_contents>
+            </output>
         </test>
     </tests>
     <help><![CDATA[
diff -r 1c55de3bf217 -r e7657a41b32a test-data/fixploidy.ploidy
--- a/test-data/fixploidy.ploidy	Sat Jun 25 20:47:06 2016 -0400
+++ b/test-data/fixploidy.ploidy	Sun Jun 26 15:47:57 2016 -0400
@@ -1,9 +1,9 @@
-1   3000001 3000001 X 0
-1   3000001 3000001 Y 1
-1   3000001 3000001 Z 2
-1   3000002 3000002 X 3
-1   3000002 3000002 Y 4
-1   3000002 3000002 Z 5
-1   3000004 3000004 X 6
-1   3000004 3000004 Y 7
-1   3000004 3000004 Z 8
+1	3000001	3000001	X	0
+1	3000001	3000001	Y	1
+1	3000001	3000001	Z	2
+1	3000002	3000002	X	3
+1	3000002	3000002	Y	4
+1	3000002	3000002	Z	5
+1	3000004	3000004	X	6
+1	3000004	3000004	Y	7
+1	3000004	3000004	Z	8
diff -r 1c55de3bf217 -r e7657a41b32a test-data/fixploidy.samples
--- a/test-data/fixploidy.samples	Sat Jun 25 20:47:06 2016 -0400
+++ b/test-data/fixploidy.samples	Sun Jun 26 15:47:57 2016 -0400
@@ -1,3 +1,3 @@
-A X
-B Y
-C Z
+A	X
+B	Y
+C	Z