Mercurial > repos > jjohnson > bcftools_consensus

diff bcftools_consensus.xml @ 1:e7657a41b32a draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
author jjohnson
date Sun, 26 Jun 2016 15:47:57 -0400
parents 1c55de3bf217
children
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--- a/bcftools_consensus.xml	Sat Jun 25 20:47:06 2016 -0400
+++ b/bcftools_consensus.xml	Sun Jun 26 15:47:57 2016 -0400
@@ -67,8 +67,16 @@
             <param name="input_file" ftype="vcf" value="consensus.vcf" />
             <param name="mask" ftype="tabular" value="consensus.tab" />
             <param name="chain" value="True" />
-            <output name="output_file" file="consensus.1.out" lines_diff="6"/>
-            <output name="output_file" file="consensus.1.chain" />
+            <output name="output_file">
+                <assert_contents>
+                    <has_text text="NNNNNNNNNNNNNNNNNNNNNNNNNN" />
+                </assert_contents>
+            </output>
+            <output name="chain_file">
+                <assert_contents>
+                    <has_text text="chain 497 1 501 + 1 501 1 502 + 1 502 1" />
+                </assert_contents>
+            </output>
         </test>
     </tests>
     <help><![CDATA[