Mercurial > repos > jjohnson > bcftools_concat
comparison test-data/view.filter.vcf @ 0:2f9528a8e6b8 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
| author | jjohnson |
|---|---|
| date | Sat, 25 Jun 2016 20:46:52 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:2f9528a8e6b8 |
|---|---|
| 1 ##fileformat=VCFv4.2 | |
| 2 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth"> | |
| 3 ##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases"> | |
| 4 ##INFO=<ID=STR,Number=A,Type=String,Description="Testing string and Number=A in INFO"> | |
| 5 ##INFO=<ID=TXT0,Number=1,Type=String,Description="Testing in INFO"> | |
| 6 ##INFO=<ID=TXT,Number=.,Type=String,Description="Testing in INFO"> | |
| 7 ##INFO=<ID=XRF,Number=R,Type=Float,Description="Test Number=AGR in INFO"> | |
| 8 ##INFO=<ID=XAF,Number=A,Type=Float,Description="Test Number=AGR in INFO"> | |
| 9 ##INFO=<ID=XGF,Number=G,Type=Float,Description="Test Number=AGR in INFO"> | |
| 10 ##INFO=<ID=XRI,Number=R,Type=Integer,Description="Test Number=AGR in INFO"> | |
| 11 ##INFO=<ID=XAI,Number=A,Type=Integer,Description="Test Number=AGR in INFO"> | |
| 12 ##INFO=<ID=XGI,Number=G,Type=Integer,Description="Test Number=AGR in INFO"> | |
| 13 ##INFO=<ID=XRS,Number=R,Type=String,Description="Test Number=AGR in INFO"> | |
| 14 ##INFO=<ID=XAS,Number=A,Type=String,Description="Test Number=AGR in INFO"> | |
| 15 ##INFO=<ID=XGS,Number=G,Type=String,Description="Test Number=AGR in INFO"> | |
| 16 ##SAMPLE=<ID=NORMAL,SampleName=B,Description="Less-than (\"<\") and greater-than (\">\") quoting nonsense where double brackets would do just fine",softwareName=<Nonsense,Software>,softwareVer=<119,65>,softwareParam=<.>,MetadataResource=http://somewhere.com/path> | |
| 17 ##INFO=<ID=CIGAR,Number=A,Type=String,Description="test"> | |
| 18 ##INFO=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observations, with partial observations recorded fractionally"> | |
| 19 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> | |
| 20 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> | |
| 21 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> | |
| 22 ##FORMAT=<ID=FGS,Number=G,Type=String,Description="Test Number=AGR in FORMAT"> | |
| 23 ##FORMAT=<ID=FGI,Number=G,Type=Integer,Description="Test Number=AGR in FORMAT"> | |
| 24 ##FORMAT=<ID=FGF,Number=G,Type=Float,Description="Test Number=AGR in FORMAT"> | |
| 25 ##FORMAT=<ID=FAS,Number=A,Type=String,Description="Test Number=AGR in FORMAT"> | |
| 26 ##FORMAT=<ID=FAI,Number=A,Type=Integer,Description="Test Number=AGR in FORMAT"> | |
| 27 ##FORMAT=<ID=FAF,Number=A,Type=Float,Description="Test Number=AGR in FORMAT"> | |
| 28 ##FORMAT=<ID=FRS,Number=R,Type=String,Description="Test Number=AGR in FORMAT"> | |
| 29 ##FORMAT=<ID=FRI,Number=R,Type=Integer,Description="Test Number=AGR in FORMAT"> | |
| 30 ##FORMAT=<ID=FRF,Number=R,Type=Float,Description="Test Number=AGR in FORMAT"> | |
| 31 ##FORMAT=<ID=STR,Number=1,Type=String,Description="Test"> | |
| 32 ##FILTER=<ID=q20,Description="Mapping quality below 20"> | |
| 33 ##contig=<ID=1,assembly=b37,length=249250621> | |
| 34 ##contig=<ID=2,assembly=b37,length=243199373> | |
| 35 ##contig=<ID=3,assembly=b37,length=198022430> | |
| 36 ##contig=<ID=4,assembly=b37,length=191154276> | |
| 37 ##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta | |
| 38 ##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes"> | |
| 39 ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes"> | |
| 40 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A B | |
| 41 1 3162006 . GAA G,GA 238 PASS DP=19;AN=4;AC=1,1;XRF=1e6,2e6,3e6;XRI=1111,2222,3333;XRS=ABC,DEF,GHI;XAF=1e6,2e6;XAI=1111,2222;XAS=ABC,DEF;XGF=1e6,2e6,3e6,4e6,5e6,6e6;XGI=11,22,33,44,55,66;XGS=ABC,DEF,GHI,JKL,MNO,PQR;TXT=ABC,DEF,GHI GT:GQ:DP:STR 0/1:589:19:XX 0/2:1:1:YY | |
| 42 1 3162007 . TAGGG CAGGG,CAGGT 238 PASS AO=52101,113;CIGAR=1X4M,1X3M1X;TXT0=text GT:FGS:FGI:FGF:FAS:FAI:FAF:FRS:FRI:FRF 0/1:AAAAAA,BBBBB,CCCC,DDD,EE,F:1,2,3,4,5,6:1e-1,2e-2,3e-3,4e-4,5e-5,6e-6:AAA,B:1,2:1e-1,2e-2:A,BB,CCC:1,2,3:1e-1,2e-2,3e-3 2:AAAAAA,BBB,C:1,2,3:1e-1,2e-2,3e-3:AAA,B:1,2:1e-1,2e-2:A,BB,CCC:1,2,3:1e-1,2e-2,3e-3 |