Mercurial > repos > jjohnson > bcftools_concat
comparison test-data/query.filter.vcf @ 0:2f9528a8e6b8 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
| author | jjohnson |
|---|---|
| date | Sat, 25 Jun 2016 20:46:52 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:2f9528a8e6b8 |
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| 1 ##fileformat=VCFv4.1 | |
| 2 ##INFO=<ID=TEST,Number=1,Type=Integer,Description="Testing Tag"> | |
| 3 ##FORMAT=<ID=TT,Number=A,Type=Integer,Description="Testing Tag, with commas and \"escapes\" and escaped escapes combined with \\\"quotes\\\\\""> | |
| 4 ##INFO=<ID=DP4,Number=4,Type=Integer,Description="# high-quality ref-forward bases, ref-reverse, alt-forward and alt-reverse bases"> | |
| 5 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> | |
| 6 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> | |
| 7 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> | |
| 8 ##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood"> | |
| 9 ##FILTER=<ID=q10,Description="Quality below 10"> | |
| 10 ##FILTER=<ID=test,Description="Testing filter"> | |
| 11 ##contig=<ID=1,assembly=b37,length=249250621> | |
| 12 ##contig=<ID=2,assembly=b37,length=249250621> | |
| 13 ##contig=<ID=3,assembly=b37,length=198022430> | |
| 14 ##contig=<ID=4,assembly=b37,length=191154276> | |
| 15 ##reference=file:///lustre/scratch105/projects/g1k/ref/main_project/human_g1k_v37.fasta | |
| 16 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A B | |
| 17 1 3000150 . C T 59.2 PASS . GT 0 0 | |
| 18 1 3000151 . C T 59.2 PASS . GT 1 0 | |
| 19 1 3000152 . C T 59.2 PASS . GT 0 1 | |
| 20 1 3000153 . C T 59.2 PASS . GT 1 1 |