Mercurial > repos > jjohnson > bcftools_call

annotate test-data/concat.3.a.vcf @ 2:af912f164fae draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
author jjohnson
date Sun, 26 Jun 2016 15:46:37 -0400
parents 20b3aaa16d64
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
20b3aaa16d64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
1 ##fileformat=VCFv4.0
20b3aaa16d64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
2 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
20b3aaa16d64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
3 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
20b3aaa16d64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
4 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
20b3aaa16d64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
5 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
20b3aaa16d64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
6 ##FILTER=<ID=q10,Description="Quality below 10">
20b3aaa16d64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
7 ##contig=<ID=9,length=62435964>
20b3aaa16d64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
8 ##contig=<ID=1,length=62435964>
20b3aaa16d64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
9 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A B
20b3aaa16d64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
10 9 202 . GTTT G 1806 q10 DP=35 GT:GQ:DP 0|1:409:35 0|1
20b3aaa16d64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
11 9 212 . C T,G 1792 PASS DP=32 GT:GQ:DP 0|1:245:32 0|1
20b3aaa16d64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
12 9 212 . CAAA C 1792 PASS DP=32 GT:GQ:DP 0|1:245:32 0|1
20b3aaa16d64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
13 9 222 . GA G 628 q10 DP=21 GT:GQ:DP 0|1:21:21 0|1
20b3aaa16d64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
14 9 232 . G T 1016 PASS DP=22 GT:GQ:DP 0|1:212:22 0|1
20b3aaa16d64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
15 9 232 . GAA GG 1016 PASS DP=22 GT:GQ:DP 0|1:212:22 0|1
20b3aaa16d64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
16 9 242 . GT G 727 PASS DP=30 GT:GQ:DP 0|1:150:30 0|1
20b3aaa16d64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
17 9 252 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 0|1:12:10 0|1
20b3aaa16d64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
18 9 262 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 0|1:12:10 0|1
20b3aaa16d64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
19 1 100 . GTTT G 1806 q10 DP=35 GT:GQ:DP 0|1:409:35 0|1
20b3aaa16d64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
20 1 110 . C T,G 1792 PASS DP=32 GT:GQ:DP 0|1:245:32 0|1
20b3aaa16d64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
21 1 110 . CAAA C 1792 PASS DP=32 GT:GQ:DP 0|1:245:32 0|1
20b3aaa16d64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
22 1 120 . GA G 628 q10 DP=21 GT:GQ:DP 0|1:21:21 0|1
20b3aaa16d64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
23 1 130 . G T 1016 PASS DP=22 GT:GQ:DP 0|1:212:22 0|1
20b3aaa16d64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
24 1 130 . GAA GG 1016 PASS DP=22 GT:GQ:DP 0|1:212:22 0|1
20b3aaa16d64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
25 1 140 . GT G 727 PASS DP=30 GT:GQ:DP 0|1:150:30 0|1
20b3aaa16d64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
26 1 150 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 0|1:12:10 0|1
20b3aaa16d64 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 21c66fb27c7e2fd21c7f7607b3b29e77e64fb86d-dirty
jjohnson
parents:
diff changeset
27 1 160 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 0|1:12:10 0|1