Mercurial > repos > jjohnson > augustus_dep
comparison tool_dependencies.xml @ 6:fb61d175ab99 draft
Fix tool_dependencies.xml install.
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Wed, 24 Oct 2012 11:08:05 -0500 |
| parents | 6d288b228c6d |
| children | bf047bff79df |
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| 5:6d288b228c6d | 6:fb61d175ab99 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="augustus" version="2.6.1"> | 3 <package name="augustus" version="2.6.1"> |
| 4 <install version="1.0"> | 4 <install version="1.0"> |
| 5 <actions> | 5 <actions> |
| 6 <action type="shell_command">wget http://bioinf.uni-greifswald.de/augustus/binaries/augustus.2.6.1.tar.gz</action> | 6 <action type="shell_command">mkdir augustus</action> |
| 7 <!-- with the first command of with type shell_command a dir will be created with the package name, and we'll operate from there. --> | 7 <!-- the first command puts us in the dir for the package name: "augustus"--> |
| 8 <action type="shell_command">pwd</action> | 8 <action type="shell_command">wget --quiet http://bioinf.uni-greifswald.de/augustus/binaries/augustus.2.6.1.tar.gz</action> |
| 9 <action type="shell_command">tar zxf ../augustus.2.6.1.tar.gz</action> | 9 <action type="shell_command">tar zxf ../augustus.2.6.1.tar.gz</action> |
| 10 <action type="shell_command">make</action> | 10 <action type="shell_command">make</action> |
| 11 <action type="move_directory_files"> | 11 <action type="move_directory_files"> |
| 12 <source_directory>bin</source_directory> | 12 <source_directory>bin</source_directory> |
| 13 <destination_directory>$INSTALL_DIR/bin</destination_directory> | 13 <destination_directory>$INSTALL_DIR/bin</destination_directory> |