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tool_dependencies.xml - try download_by_url
author Jim Johnson <jj@umn.edu>
date Thu, 25 Oct 2012 15:49:37 -0500
parents bf047bff79df
children
comparison
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7:bf047bff79df 8:8efa8a337565
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="augustus" version="2.6.1"> 3 <package name="augustus" version="2.6.1">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions>
6 <action type="shell_command">mkdir augustus</action>
7 <!-- the first command puts us in the dir for the package name: "augustus"--> 6 <!-- the first command puts us in the dir for the package name: "augustus"-->
8 <action type="shell_command">wget --quiet http://bioinf.uni-greifswald.de/augustus/binaries/augustus.2.6.1.tar.gz</action> 7 <action type="download_by_url">http://bioinf.uni-greifswald.de/augustus/binaries/augustus.2.6.1.tar.gz</action>
9 <action type="shell_command">tar zxf augustus.2.6.1.tar.gz</action>
10 <action type="shell_command">make</action> 8 <action type="shell_command">make</action>
11 <action type="move_directory_files"> 9 <action type="move_directory_files">
12 <source_directory>bin</source_directory> 10 <source_directory>bin</source_directory>
13 <destination_directory>$INSTALL_DIR/bin</destination_directory> 11 <destination_directory>$INSTALL_DIR/bin</destination_directory>
14 </action> 12 </action>
32 </actions> 30 </actions>
33 </install> 31 </install>
34 <readme>http://augustus.gobics.de/binaries/README.TXT</readme> 32 <readme>http://augustus.gobics.de/binaries/README.TXT</readme>
35 </package> 33 </package>
36 </tool_dependency> 34 </tool_dependency>
37