Mercurial > repos > jjohnson > augustus_dep

comparison tool_dependencies.xml @ 3:75675bc1aafb draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Upgrade to augustus version 2.6.1
author Jim Johnson <jj@umn.edu>
date Tue, 23 Oct 2012 09:05:09 -0500
parents d088c697396d
children 06b5da1079d8
comparison
equal deleted inserted replaced
2:d088c697396d 3:75675bc1aafb
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="augustus" version="2.5.5"> 3 <package name="augustus" version="2.6.1">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions>
6 <action type="download_by_url">http://augustus.gobics.de/binaries/augustus.2.5.5.tar.gz</action> 6 <action type="download_by_url">http://bioinf.uni-greifswald.de/augustus/binaries/augustus.2.6.1.tar.gz</action>
7 <action type="shell_command">make</action> 7 <action type="shell_command">make</action>
8 <action type="move_directory_files"> 8 <action type="move_directory_files">
9 <source_directory>bin</source_directory> 9 <source_directory>bin</source_directory>
10 <destination_directory>$INSTALL_DIR/bin</destination_directory> 10 <destination_directory>$INSTALL_DIR/bin</destination_directory>
11 </action> 11 </action>
16 <action type="move_directory_files"> 16 <action type="move_directory_files">
17 <source_directory>config</source_directory> 17 <source_directory>config</source_directory>
18 <destination_directory>$INSTALL_DIR/config</destination_directory> 18 <destination_directory>$INSTALL_DIR/config</destination_directory>
19 </action> 19 </action>
20 <action type="set_environment"> 20 <action type="set_environment">
21 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/scripts</environment_variable>
22 </action>
23 <action type="set_environment">
21 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> 24 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
22 </action> 25 </action>
23 <action type="set_environment"> 26 <action type="set_environment">
24 <environment_variable name="AUGUSTUS_CONFIG_PATH" action="set_to">$INSTALL_DIR/config</environment_variable> 27 <environment_variable name="AUGUSTUS_CONFIG_PATH" action="set_to">$INSTALL_DIR/config</environment_variable>
25 </action> 28 </action>