# HG changeset patch
# User jdv
# Date 1508034635 14400
# Node ID 40232a4e5a0437c0800b4f3b0ef97fbb8b44202e
# Parent  80408ff0c1f52dd52af0fd06a82e072eab22e2ea
planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/porechop commit 2a0c81f39a2d50819a327cb889f336b136612d60-dirty

diff -r 80408ff0c1f5 -r 40232a4e5a04 porechop.xml
--- a/porechop.xml	Sat Oct 14 22:23:22 2017 -0400
+++ b/porechop.xml	Sat Oct 14 22:30:35 2017 -0400
@@ -50,6 +50,7 @@
             --barcode_threshold $demux_section.demux_options.barcode_threshold
             --barcode_diff $demux_section.demux_options.barcode_diff
             $demux_section.demux_options.require_two_barcodes
+            $demux_section.demux_options.discard_unassigned
 
         #end if
 
@@ -106,6 +107,7 @@
                 <param argument="--barcode_threshold" size="5" type="float" value="75.0" min="0" max="100" label="Barcode threshold identity" />
                 <param argument="--barcode_diff" size="5" type="float" value="5.0" min="0" max="100" label="Barcode threshold difference" />
                 <param argument="--require_two_barcodes" type="boolean" truevalue="--require_two_barcodes" falsevalue="" checked="false" label="Require two barcodes" />
+                <param argument="--discard_unassigned" type="boolean" truevalue="--discard_unassigned" falsevalue="" checked="false" label="Discard unassigned reads" />
             </when>
             </conditional>
         </section>