# HG changeset patch
# User jdv
# Date 1508085020 14400
# Node ID 15e64c5938e62d6bfeba328e1eacd2fc3ac5c74d
# Parent  64fcb9c72e47bf3495f3fb6fa95a2e0424d59724
planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/porechop commit 083a08f96c17f3116dce1dc1573192860f41ed70-dirty

diff -r 64fcb9c72e47 -r 15e64c5938e6 porechop.xml
--- a/porechop.xml	Sat Oct 14 23:08:38 2017 -0400
+++ b/porechop.xml	Sun Oct 15 12:30:20 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="porechop" name="Porechop" version="0.2.1">
+<tool id="porechop" name="Porechop" version="0.2.2">
 
     <description>Demux and adapter removal</description>
 
@@ -162,7 +162,7 @@
         <test>
             <param name="input" value="test_barcodes.fastq" ftype="fastq" />
             <param name="demux" value="yes" />
-            <output_collection name="output_collection_fastq" type="list">
+            <output_collection name="output_collection_fastq" type="list" count="4">
                 <element name="BC01.fastq" file="bar1/BC01.fastq" compare="diff" decompress="true"/>
                 <element name="BC02.fastq" file="bar1/BC02.fastq" compare="diff" decompress="true"/>
                 <element name="BC03.fastq" file="bar1/BC03.fastq" compare="diff" decompress="true"/>
@@ -173,7 +173,7 @@
             <param name="input" value="test_barcodes.fastq" ftype="fastq" />
             <param name="demux" value="yes" />
             <param name="require_two_barcodes" value="True" />
-            <output_collection name="output_collection_fastq" type="list">
+            <output_collection name="output_collection_fastq" type="list" count="4">
                 <element name="BC01.fastq" file="bar2/BC01.fastq" compare="diff" decompress="true"/>
                 <element name="BC02.fastq" file="bar2/BC02.fastq" compare="diff" decompress="true"/>
                 <element name="BC03.fastq" file="bar2/BC03.fastq" compare="diff" decompress="true"/>
@@ -184,11 +184,11 @@
             <param name="input" value="test_barcodes.fastq" ftype="fastq" />
             <param name="demux" value="yes" />
             <param name="trim" value="yes" />
-            <output_collection name="output_collection_fastq" type="list">
+            <param name="discard_unassigned" value="yes" />
+            <output_collection name="output_collection_fastq" type="list" count="3">
                 <element name="BC01.fastq" file="bar1_trim/BC01.fastq" compare="diff" decompress="true"/>
                 <element name="BC02.fastq" file="bar1_trim/BC02.fastq" compare="diff" decompress="true"/>
                 <element name="BC03.fastq" file="bar1_trim/BC03.fastq" compare="diff" decompress="true"/>
-                <element name="none.fastq" file="bar1_trim/none.fastq" compare="diff" decompress="true"/>
             </output_collection>
         </test>
     </tests>