Mercurial > repos > jdv > porechop

comparison porechop.xml @ 10:0cb1ba651e9e draft default tip

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planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/porechop commit 83364d7d78ca5524a08065daef995bfcd54a379d-dirty
author jdv
date Fri, 01 Dec 2017 21:36:54 -0500
parents e3ad639c692a
children
comparison
equal deleted inserted replaced
9:e3ad639c692a 10:0cb1ba651e9e
129 129
130 <!-- ***************************************************************** --> 130 <!-- ***************************************************************** -->
131 131
132 <outputs> 132 <outputs>
133 133
134 <!-- Demuxed -->
134 <collection type="list" name="output_collection_fastq" label="${tool.name} on ${on_string}"> 135 <collection type="list" name="output_collection_fastq" label="${tool.name} on ${on_string}">
135 <filter>out_format == 'fastq'</filter> 136 <filter>out_format == 'fastq'</filter>
136 <filter>demux_section['demux_options']['demux'] == 'yes'</filter> 137 <filter>demux_section['demux_options']['demux'] == 'yes'</filter>
137 <discover_datasets pattern="__designation_and_ext__" directory="out" format="fastqsanger" /> 138 <discover_datasets pattern="__designation_and_ext__" directory="out" format="fastqsanger" />
138 </collection> 139 </collection>
139 <collection type="list" name="output_collection_fasta" label="${tool.name} on ${on_string}"> 140 <collection type="list" name="output_collection_fasta" label="${tool.name} on ${on_string}">
140 <filter>out_format == 'fasta'</filter> 141 <filter>out_format == 'fasta'</filter>
141 <filter>demux_section['demux_options']['demux'] == 'yes'</filter> 142 <filter>demux_section['demux_options']['demux'] == 'yes'</filter>
142 <discover_datasets pattern="__designation_and_ext__" directory="out" format="fasta" /> 143 <discover_datasets pattern="__designation_and_ext__" directory="out" format="fasta" />
143 </collection> 144 </collection>
145 <data format="tabular" name="result_table" label="${tool.name} on ${on_string} (summary)">
146 <filter>demux_section['demux_options']['demux'] == 'yes'</filter>
147 </data>
148
149 <!-- Not Demuxed -->
144 <data format="fastq" name="ouput_fastq"> 150 <data format="fastq" name="ouput_fastq">
145 <discover_datasets directory='out' pattern="(?P&lt;designation&gt;.+)" ext="fastq" visible="true" assign_primary_output="true" /> 151 <discover_datasets directory='out' pattern="(?P&lt;designation&gt;.+)" ext="fastq" visible="true" assign_primary_output="true" />
146 <filter>out_format == 'fastq'</filter> 152 <filter>out_format == 'fastq'</filter>
147 <filter>demux_section['demux_options']['demux'] == 'no'</filter> 153 <filter>demux_section['demux_options']['demux'] == 'no'</filter>
148 </data> 154 </data>
150 <discover_datasets directory='out' pattern="(?P&lt;designation&gt;.+)" ext="fasta" visible="true" assign_primary_output="true" /> 156 <discover_datasets directory='out' pattern="(?P&lt;designation&gt;.+)" ext="fasta" visible="true" assign_primary_output="true" />
151 <filter>out_format == 'fasta'</filter> 157 <filter>out_format == 'fasta'</filter>
152 <filter>demux_section['demux_options']['demux'] == 'no'</filter> 158 <filter>demux_section['demux_options']['demux'] == 'no'</filter>
153 </data> 159 </data>
154 160
155 <data format="tabular" name="result_table" label="${tool.name} on ${on_string} (summary)" />
156 </outputs> 161 </outputs>
157 162
158 <!-- ***************************************************************** --> 163 <!-- ***************************************************************** -->
159 164
160 <tests> 165 <tests>