Mercurial > repos > jdv > porechop

comparison porechop.xml @ 4:40232a4e5a04 draft

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planemo upload for repository https://github.com/jvolkening/galaxy-tools/tree/master/tools/porechop commit 2a0c81f39a2d50819a327cb889f336b136612d60-dirty
author jdv
date Sat, 14 Oct 2017 22:30:35 -0400
parents 80408ff0c1f5
children 15e64c5938e6
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3:80408ff0c1f5 4:40232a4e5a04
48 #if str($demux_section.demux_options.demux) == "yes": 48 #if str($demux_section.demux_options.demux) == "yes":
49 49
50 --barcode_threshold $demux_section.demux_options.barcode_threshold 50 --barcode_threshold $demux_section.demux_options.barcode_threshold
51 --barcode_diff $demux_section.demux_options.barcode_diff 51 --barcode_diff $demux_section.demux_options.barcode_diff
52 $demux_section.demux_options.require_two_barcodes 52 $demux_section.demux_options.require_two_barcodes
53 $demux_section.demux_options.discard_unassigned
53 54
54 #end if 55 #end if
55 56
56 ##--Adapter Trim Options-------------------------- 57 ##--Adapter Trim Options--------------------------
57 58
104 <when value="no" /> 105 <when value="no" />
105 <when value="yes"> 106 <when value="yes">
106 <param argument="--barcode_threshold" size="5" type="float" value="75.0" min="0" max="100" label="Barcode threshold identity" /> 107 <param argument="--barcode_threshold" size="5" type="float" value="75.0" min="0" max="100" label="Barcode threshold identity" />
107 <param argument="--barcode_diff" size="5" type="float" value="5.0" min="0" max="100" label="Barcode threshold difference" /> 108 <param argument="--barcode_diff" size="5" type="float" value="5.0" min="0" max="100" label="Barcode threshold difference" />
108 <param argument="--require_two_barcodes" type="boolean" truevalue="--require_two_barcodes" falsevalue="" checked="false" label="Require two barcodes" /> 109 <param argument="--require_two_barcodes" type="boolean" truevalue="--require_two_barcodes" falsevalue="" checked="false" label="Require two barcodes" />
110 <param argument="--discard_unassigned" type="boolean" truevalue="--discard_unassigned" falsevalue="" checked="false" label="Discard unassigned reads" />
109 </when> 111 </when>
110 </conditional> 112 </conditional>
111 </section> 113 </section>
112 114
113 <section name="trim_section" title="Trimming Options" expanded="True"> 115 <section name="trim_section" title="Trimming Options" expanded="True">